LOCUS NC_025728 2122 bp DNA circular VRL 13-AUG-2018
DEFINITION Faecal-associated gemycircularvirus 12, complete genome.
ACCESSION NC_025728
VERSION NC_025728.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Faeces associated gemycircularvirus 12
ORGANISM Faeces associated gemycircularvirus 12
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Genomoviridae; Gemytondvirus;
Gemytondvirus ostri1.
REFERENCE 1 (bases 1 to 2122)
AUTHORS Sikorski,A., Massaro,M., Kraberger,S., Young,L.M., Smalley,D.,
Martin,D.P. and Varsani,A.
TITLE Novel myco-like DNA viruses discovered in the faecal matter of
various animals
JOURNAL Virus Res. 177 (2), 209-216 (2013)
PUBMED 23994297
REFERENCE 2 (bases 1 to 2122)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (26-NOV-2014) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2122)
AUTHORS Sikorski,A., Massaro,M., Kraberger,S., Young,L., Smalley,D.,
Roumagnac,P., Martin,D.P. and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (09-JUL-2013) School of Biological Sciences, University
of Canterbury, Private Bag 4800, Christchurch 8014, New Zealand
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KF371630.
##Assembly-Data-START##
Assembly Method :: DNAMAN v. 7
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2122
/organism="Faeces associated gemycircularvirus 12"
/mol_type="genomic DNA"
/isolate="as3"
/isolation_source="feces"
/host="Struthio camelus"
/db_xref="taxon:1391027"
/country="New Zealand"
/collection_date="2011"
gene 219..1004
/locus_tag="QU87_gp1"
/db_xref="GeneID:22284071"
CDS 219..1004
/locus_tag="QU87_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_009109714.1"
/db_xref="GeneID:22284071"
/translation="MYRKGGKYKKRSYKRRKYNKNKVSKKVWKASKKAAKAQIYRMSE
TKVIHSTGYSSYITAAESQFLCALHPFYFMTNHSREAGLVGNEFDLRYFELQGSLNFD
GFSTALMSDVWLRISLIRTPEYWPNDAGTPVSSTIPTSTYALPLSAEPWFSKFNSNSV
KVLQTKTIRLPGAAYVGNQTSTNRIHKYKNFKIKFRKLKGKKTIMSNYDENIVAGAGR
RIRQGQFYIIIHMASVNAVSGTTSTDIVRRWLDWTYSMYYKDI"
gene complement(942..2096)
/locus_tag="QU87_gp2"
/db_xref="GeneID:22284070"
CDS complement(942..2096)
/locus_tag="QU87_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_009109715.1"
/db_xref="GeneID:22284070"
/translation="MPFRFDNKRVFLTYSQVGQRTLDSIYDFLSTLKDGRGELVAIEY
IVVARERHLDGGFHFHAFILFRERFQSRNQRIFDFDGLHPNIESVRGERNVANKITYT
KKDGEFKEHGDEPTVAERANKQQHWLDLIDSSTDAADFMGKAKSVAPRDFVLQNDKFE
AFARKYYNNVATYVSEYGPEDFVVPAECNDWVRDVLNEVCFLGTCYSQIPNSNIVRIL
GTRSSQMLGPHRRRRTRQTEWARCLGDHFYNSTWFNLDEVDPSKKYAVFDDIRLNEKS
YWSWKPWFGGQKEFTVTDKFRHKRKLMWGKPIIWVCNPASDPRNIAGLDSAKFAESNP
RCARRAQEIELILCNTPNPNGMFCEDVVCILYIFVIHRVGPIKPPSNYIG"
misc_feature complement(1761..2090)
/locus_tag="QU87_gp2"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
ORIGIN
1 taacattgag gcatcccgtc ccctccaccc tccaccccta tttatataaa aaaccgatgt
61 cttgccaagt cgcgtttttt ttctgtgttc ccgcaaattt ttcaatttgg tgatcccgcc
121 catcccggct tgtgatcccg cttgtgtaat gtcacacaag atcagccgcc accccactat
181 cattagaaat ccccgcaatc ctaacgtagt tattttcgat gtatcggaaa ggcgggaagt
241 acaagaagcg gtcgtacaaa cgccgcaaat acaacaagaa caaggtcagc aagaaagtat
301 ggaaggcgtc gaagaaagcc gcaaaggcgc agatataccg gatgtcggag acgaaggtca
361 tccatagtac gggctacagt tcgtacatca ccgcggctga atcacaattc ctttgcgccc
421 tacatccgtt ctatttcatg acgaatcata gtcgggaagc tgggcttgtc ggtaatgagt
481 tcgacctccg ttatttcgag ctacaaggct cgttgaattt cgatgggttc tcaactgcgt
541 tgatgtcgga tgtatggttg cgcatttctc tgatccgtac tcccgagtac tggccaaacg
601 atgctggcac acctgtcagc tctaccattc ctaccagtac ctacgctctg ccgttatcgg
661 ctgagccgtg gttttccaaa ttcaattcca attccgtcaa agtgttgcag accaaaacca
721 ttaggttacc tggggctgct tacgtaggca atcagacttc tacgaatcgg attcacaagt
781 acaaaaattt caaaatcaaa tttcgcaaac tcaaaggcaa gaaaaccatc atgtccaact
841 acgacgagaa catagtggca ggcgccggca ggcgcatacg ccaagggcag ttctacatta
901 tcatacacat ggcctccgtt aacgcggtct ccggaaccac ctcaaccgat atagttagac
961 ggtggcttga ttggacctac tcgatgtatt acaaagatat ataatataca aactacatcc
1021 tcgcaaaaca tgccgttagg gttcggcgta ttgcataaaa tgagttctat ctcttgggcc
1081 cgcctagcgc agcgggggtt ggattcggcg aatttcgccg aatccaaccc cgcaatgttt
1141 ctggggtccg atgctgggtt acacacccag atgatcggtt tcccccacat caatttacgc
1201 ttgtgccgaa acttatcggt aaccgtaaat tccttttgac caccgaacca tggtttccaa
1261 gaccagtaag atttctcgtt gagtctgatg tcgtcgaaga cggcgtactt tttgctggga
1321 tcaacttcgt ccaagttgaa ccatgttgag ttgtaaaagt ggtcacctaa gcaccgcgcc
1381 cactcggttt gccgagttct cctcctccga tgaggaccaa gcatttggga cgatctggtc
1441 cctagtatcc gaactatatt agaattaggt atttgcgaat agcaagtgcc caaaaaacat
1501 acctcgttga gaacatctct gacccaatcg ttgcattctg ccggaacaac gaaatcctct
1561 gggccgtatt ctgagacgta tgtggcgacg ttgttgtaat atttcctcgc aaaggcctca
1621 aacttgtcat tctggaggac gaagtctctc ggcgccacac tcttggcctt tcccataaag
1681 tctgcggcat cggtagatga gtcgatgagg tcgagccaat gttgttgctt atttgctctc
1741 tcagcaaccg taggctcgtc gccgtgttcc ttgaactcgc cgtccttttt cgtgtaggtg
1801 attttgtttg cgacgtttcg ctctcctctg actgactcga tgtttgggtg gagtccgtcg
1861 aaatcgaaga ttcgctggtt ccttgactgg aaccgctctc tgaacaagat gaaagcgtgg
1921 aagtggaatc ctccgtcgag gtgtcgctct ctagcgacga cgatgtattc gatggcaacg
1981 agctcgcctc gtccatcttt gagggtggaa aggaagtcat agatactatc taaagtacgt
2041 tgaccgactt gggaatatgt aaggaagacc cgtttattgt caaaacggaa gggcataatt
2101 ggaggggtaa gagggatgct tt
//
