LOCUS NC_025733 2290 bp DNA circular VRL 01-FEB-2022
DEFINITION Mallard associated gemycircularvirus 1, complete genome.
ACCESSION NC_025733
VERSION NC_025733.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Mallard associated gemycircularvirus 1
ORGANISM Mallard associated gemycircularvirus 1
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus;
Gemycircularvirus malas1.
REFERENCE 1 (bases 1 to 2290)
AUTHORS Sikorski,A., Massaro,M., Kraberger,S., Young,L.M., Smalley,D.,
Martin,D.P. and Varsani,A.
TITLE Novel myco-like DNA viruses discovered in the faecal matter of
various animals
JOURNAL Virus Res. 177 (2), 209-216 (2013)
PUBMED 23994297
REFERENCE 2 (bases 1 to 2290)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (26-NOV-2014) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2290)
AUTHORS Sikorski,A., Massaro,M., Kraberger,S., Young,L., Smalley,D.,
Roumagnac,P., Martin,D.P. and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (09-JUL-2013) School of Biological Sciences, University
of Canterbury, Private Bag 4800, Christchurch 8014, New Zealand
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KF371635.
##Assembly-Data-START##
Assembly Method :: DNAMAN v. 7
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2290
/organism="Mallard associated gemycircularvirus 1"
/mol_type="genomic DNA"
/isolate="as24"
/isolation_source="feces"
/host="Anas platyrhynchos"
/db_xref="taxon:1985386"
/country="New Zealand"
/collection_date="2012"
gene 136..1086
/locus_tag="QU78_gp1"
/db_xref="GeneID:22284088"
CDS 136..1086
/locus_tag="QU78_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_009109724.1"
/db_xref="GeneID:22284088"
/translation="MAYTRRRYGTRYARRGVRRGSRRTSTRGYVRKRANKYRRRRRTG
VSRKRILNITSTKKADHMINANKDDPVTPVNPLSGLGPTIVNPANGVTQCYAWIATAR
DNTNTPGVPAGGVDDSSRTADVCYMRGLKERIGLESSSNLPFQWRRICFTFKGQEILR
DRTSTAVGSLYQEAAPPGWMRTTTHIQGLNVTSNFVYDNLETILFRGVKNLDWFDEMN
AQVDRYRVDLKYDRIRSFQSGNDVGLLRKINMWHPMNKNLEYNSDESAGGRLESVLSS
NTKGSMGDYYVIDYFRFSAFATINDAIAFTPEACLYWHER"
gene complement(1083..2221)
/locus_tag="QU78_gp2"
/db_xref="GeneID:22284087"
CDS complement(join(1083..1447,1588..2221))
/locus_tag="QU78_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_009109725.1"
/db_xref="GeneID:22284087"
/translation="MSRQFCLKDAKYCLLTYPQIPETEAYEFPELASELFSSERVDAN
YVIGRELHADGGYTSHCFLDFGRKFSSRDTRIFDIQGHHPNIERVGRTPRTAYNYTIK
DNDVVARSGEYSGPPENNNSRERQSGNDTSSDWATILCAESRDEFFDLCKSLQPRSLA
CSFLSLTRYADWRYRPVPTPYQHPDDWSFNLESHSVLLDWVDESLRGGQDRSLVMYGE
TRLGKTVWARSLGPHLYFCGLYSYKEASRAHEAEYAIFDDLQGGIKFFHGFKNWLGAQ
QEFQIKGLYRDPELLKWGKPSIWCSNTDPRQDLDYSDRCWLEGNCVFVEVTTSLIG"
misc_feature complement(1883..2194)
/locus_tag="QU78_gp2"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(join(1404..1447,1588..1852))
/locus_tag="QU78_gp2"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
ORIGIN
1 taatattata cccaacggac agcggacagc tgtcctataa atacccctca ccccctcccc
61 cctctgactc atttctcttt tccttttttt ctcgctttgt ttcaggttta ggcacccgtt
121 tactttcaac caatcatggc ttatacccgc aggagatatg gaactcgcta cgcacgtagg
181 ggagtgaggc gtgggtcacg ccgaacctca actagggggt acgtgcgtaa gcgagcaaat
241 aagtatcggc gacgccgtcg cacgggtgtt tcacgtaaac ggatccttaa cataacgtcc
301 actaagaagg ctgatcatat gatcaatgcg aacaaggatg atccagtcac cccggttaat
361 ccacttagtg gtttgggacc aacaatcgtc aatccagcga atggagtcac tcagtgttat
421 gcctggattg ctaccgctcg agataacact aacacccccg gcgtccctgc aggaggtgtc
481 gatgattcat caagaacagc agatgtgtgt tacatgcgcg gccttaagga gcgaattgga
541 ctcgagtcct cgtcgaactt gccttttcag tggcgtcgta tctgtttcac tttcaaggga
601 caggagattt tgcgtgacag aacgtctaca gctgttggat cattgtatca ggaagctgct
661 ccaccaggct ggatgcgaac tactacacat atccagggac tcaacgttac ttccaatttt
721 gtatacgata acctggagac aatcctcttc cgaggagtga agaatttgga ttggtttgat
781 gagatgaatg ctcaagttga ccggtaccgg gtggacttga agtatgatag gattaggtca
841 ttccagtctg ggaatgatgt gggtttactg cgaaagataa acatgtggca tcctatgaac
901 aagaatttgg agtacaattc tgacgagtct gcgggaggaa gattggagtc tgttttgtca
961 tcgaacacga agggcagcat gggcgattat tacgtaatcg actatttcag gttttcagcg
1021 tttgcaacga taaacgacgc catagcattc acccccgagg cctgcctcta ttggcatgaa
1081 cgctaaccaa tcaatgaggt tgttacttct acgaatacac agtttccctc caaccagcaa
1141 cgatcagaat agtctaggtc ctgcctagga tccgtgttgc tgcaccaaat agaaggtttt
1201 ccccacttta gaagttcagg gtctctgtag agacctttga tctgaaattc ttgttgtgcc
1261 cctaaccaat ttttgaaccc gtgaaagaat ttgatccccc cttgcaagtc atcaaatatt
1321 gcatactctg cttcatgtgc acgtgatgcc tctttgtaag aatacaggcc acagaagtat
1381 agatgtggtc ctaatgatct tgcccatacc gttttaccca atctcgtttc tccgtacatg
1441 actaatgact taggtctaga atgactaagt cagctaatat gcttactaat agattagtca
1501 tcaagcaacc cctaatatgc tttaaccctc gcggacgccc ccggcctgcc ggggttaagt
1561 gcggccgcgc agagcagaag attacttacc gatcttgccc tcctctcaga ctctcgtcta
1621 cccagtctaa caatactgag tgactctcca agttgaagga ccagtcgtct ggatgctgat
1681 acggagtggg tacaggcctg tatctccaat cggcatatct agtaaggctg aggaaagagc
1741 atgcaaggct tcttggttgt aaggacttgc agaggtcgaa aaattcatct cgactttctg
1801 cgcatagtat tgtggcccag tcacttgatg tgtcatttcc tgattgtcgt tctcgtgaat
1861 tgttattctc aggtggtccg gaatattctc ctgatctggc aacgacatca ttgtctttga
1921 tggtgtaatt gtaagcggtt ctgggagttc ttcccactcg ctcgatattg gggtggtgtc
1981 cctgaatatc gaaaattctg gtgtctctgc tcgagaactt tctgccaaag tcgagaaagc
2041 agtgggaagt gtatcctcca tcagcgtgga gttctcttcc aatgacgtag tttgcgtcaa
2101 cccgttcaga ggagaatagt tcgctggcaa gctcggggaa ttcataagcc tcggtttctg
2161 gaatttgagg gtaggtgagg agacagtatt ttgcatcttt gaggcagaat tgccgggaca
2221 tccttcggcc tgacagaatt caaaggggca ttcaaaagac attttgccaa gaaagtccgt
2281 tgggtaaaac
//
