LOCUS NC_026639 2212 bp DNA circular VRL 13-AUG-2018
DEFINITION Avon-Heathcote Estuary associated circular virus 13 isolate
AHEaCV-13-NZ-1986SG-2012, complete genome.
ACCESSION NC_026639
VERSION NC_026639.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Avon-Heathcote Estuary associated circular virus 13
ORGANISM Avon-Heathcote Estuary associated circular virus 13
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Arfiviricetes; Cirlivirales; Circoviridae.
REFERENCE 1 (bases 1 to 2212)
AUTHORS Dayaram,A., Goldstien,S., Arguello-Astorga,G.R., Zawar-Reza,P.,
Gomez,C., Harding,J.S. and Varsani,A.
TITLE Diverse small circular DNA viruses circulating amongst estuarine
molluscs
JOURNAL Infect. Genet. Evol. 31C, 284-295 (2015)
PUBMED 25697886
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 2212)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2015) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2212)
AUTHORS Dayaram,A., Varsani,A., Goldstien,S. and Arguello Astorga,G.R.
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2014) School of Biological Sciences, University
of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KM874330.
##Assembly-Data-START##
Assembly Method :: DNA Baser Sequence Assembler v. 4.16
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2212
/organism="Avon-Heathcote Estuary associated circular
virus 13"
/mol_type="genomic DNA"
/isolate="AHEaCV-13-NZ-1986SG-2012"
/isolation_source="benthic sediment"
/db_xref="taxon:1618236"
/country="New Zealand"
/collection_date="2012"
gene 68..1171
/locus_tag="VM19_gp1"
/db_xref="GeneID:23698188"
CDS 68..1171
/locus_tag="VM19_gp1"
/codon_start=1
/product="putative capsid protein"
/protein_id="YP_009126904.1"
/db_xref="GeneID:23698188"
/translation="MRLLKPKEYSQGKRIFGQAFATAGAAAMRARKRSRGYSRTNTGR
RTGMRSKKRIGLGRTLTTRQKDFSRTYVRKPMPYRKKRKWVQFKNKVNTVAEDELGTQ
TVIFNNQDTAGITEGVAGGQGTLEASLYGVAGRPDRHNDLAIVRGMLNDGDPTAAAGI
NVDDTTKYIFHSGVLDITLRNTSKQRETANDPYIPWNECSLEVDLYIISSNKKWQPDT
LSIRQCLDSGFATTKGLDGAGNQLTRSKRGVTVFDCPDGISKYGLQVQKKTKYFIPYG
QQVTYQMRDPKRHVMRRGNMSTGNYGNTPNKPGLTHYVFISYKPVTGLPNLADINNIP
QLSMGNTRKYMFKVEGMNDTRDEYKSGSIVDFN"
gene complement(1164..2060)
/locus_tag="VM19_gp2"
/db_xref="GeneID:23698187"
CDS complement(1164..2060)
/locus_tag="VM19_gp2"
/codon_start=1
/product="replication-associated protein"
/protein_id="YP_009126905.1"
/db_xref="GeneID:23698187"
/translation="MTCRNWCLTLNNFTPEEEEVLKEEKPWIKFVVYQVEMGESGTPH
LQGYIETNGGVRMSKMKRMLERGHWEQRLGSRAQALTYCLKEDSRVRGPYLIGLSQEE
LNSYLKKNPKSTDLNVIKDKIKAGASELDVADAHFGSWVRYYKAFERYRCLNTKKRST
IDKVIIIVGPTGTGKSRFCMEQYPDAYWKQRSNWWCGYSGESTIIIDEFYGWIPFDML
LRLCDRYPLLLETKGGQCQCVATTIVITSNHHPNTWYKNSYVESLYRRFTNIIYMPAL
GVSEHLNSIEDLHLNYFNFPPN"
misc_feature complement(1803..2051)
/locus_tag="VM19_gp2"
/note="Putative viral replication protein; Region:
Viral_Rep; pfam02407"
/db_xref="CDD:280553"
misc_feature complement(1317..1568)
/locus_tag="VM19_gp2"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl38936"
/db_xref="CDD:453896"
ORIGIN
1 tagtattacc ccgccagtcg tgacttgtga caaatgattt tgtatacatt ttacaagtca
61 cttcataatg cgattactca aaccaaaaga gtattctcaa ggaaaacgca tattcggaca
121 agctttcgca acagcaggag cagcagccat gcgcgcacga aaacgatcac gaggatatag
181 tcgaaccaac accggtcgta ggacaggaat gcgtagcaag aaacgtatag gcctaggccg
241 aacgcttacc acacgtcaga aggatttcag tagaacgtat gttcggaaac caatgccata
301 tcgtaaaaaa cgaaagtggg tacaattcaa aaataaggta aacaccgtag cagaagatga
361 actaggtaca cagacagtca ttttcaacaa ccaggataca gctggtataa ccgaaggcgt
421 agcaggagga caaggaaccc ttgaagcaag tctatacggc gtagccggaa ggccagaccg
481 tcacaatgat ttagcaattg tcagaggaat gctcaatgat ggagatccaa cagcagcagc
541 cggaatcaat gtagatgata caacgaaata tatatttcat tcaggagtat tagatattac
601 attacgaaac acctcaaaac aacgagagac cgcaaacgac ccatatatcc cctggaatga
661 atgttcacta gaagtagacc tctatattat atctagcaac aagaaatggc aaccagacac
721 actatcaatt cgacaatgtc tagacagtgg attcgctacc actaaaggat tagatggagc
781 aggaaaccaa ttaacacgta gtaaacgtgg agtaacagta ttcgattgcc ctgatggcat
841 atcaaagtat ggacttcaag tacaaaagaa aaccaaatat tttatcccat atggacaaca
901 agtaacttac cagatgagag accccaaacg acatgtgatg cgtcgaggaa acatgagtac
961 cggaaactat ggaaacacac ctaacaaacc cggattaacg cattatgtat ttattagcta
1021 taaaccagtc accggattac caaatctcgc agatattaac aatattccac aattatcaat
1081 gggcaacact cgaaagtata tgttcaaagt agaaggaatg aacgatacac gagatgaata
1141 taaatcagga agtatcgtag atttcaatta ggaggaaaat taaagtagtt taaatgaagg
1201 tcttcaatag aattcaaatg ttcactcact ccaagcgccg gcatgtatat gatgttcgta
1261 aagcgtcgat atagagattc aacatagctg ttcttgtacc aagtattagg atgatgatta
1321 ctagtaataa cgatagtagt agccacacat tgacattgcc ctcctttcgt ttcaaggagc
1381 aatgggtatc gatcacacaa tctgagcaac atgtcgaatg ggatccatcc gtaaaattca
1441 tcaatgatga tggtggactc gccggagtat ccacaccacc agttagaccg ctgtttccaa
1501 tatgcatcgg gatattgttc catgcagaat ctggactttc cagtaccagt gggtcccaca
1561 atgatgatga ctttatcaat agtcgatctc tttttagtat tcaaacaacg ataacgttca
1621 aaggctttat agtatcttac ccaactacca aaatgtgcat cagccacatc caattcagat
1681 gcgccagctt taatcttgtc tttaattaca tttaagtcag tgctcttcgg attcttcttc
1741 aaatatgaat tcaattcttc ttgcgacagg cctatcaaat aaggtccgcg cacacgtgag
1801 tcttccttca aacaataggt caatgcctgg gccctcgacc ccaaacgctg ctcccaatgt
1861 cctctttcta gcattctctt cattttcgac attcggacac cgccgtttgt ttctatgtac
1921 ccttggagat gtggggtacc actctccccc atctccacct ggtacacaac aaattttatc
1981 catggcttct cttctttcaa tacctcttct tcttcaggag taaaattgtt taatgttaga
2041 caccaattgc gacaggtcat ctttgcaaat tcaaaaatga gcgattggat gtcatagctt
2101 tagattgttc tagaagcttt ctcttcaact tgcagttacc ctacaatggt taggaccaaa
2161 taccctccta gggttagggt tatcaggata cagagatgtc acaaggcggg ca
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