LOCUS NC_026760 2932 bp DNA circular VRL 04-NOV-2021
DEFINITION Apple geminivirus 1 isolate China, complete genome.
ACCESSION NC_026760
VERSION NC_026760.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Apple geminivirus 1
ORGANISM Apple geminivirus 1
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Geminiviridae; Maldovirus.
REFERENCE 1 (bases 1 to 2932)
AUTHORS Liang,P. and Li,S.
TITLE Identification and characterization of a novel geminivirus with
monopartite genome infecting apple trees
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2932)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2015) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2932)
AUTHORS Liang,P. and Li,S.
TITLE Direct Submission
JOURNAL Submitted (21-AUG-2014) State Key Laboratory of Biology of Plant
Diseases and Insect Pests, Institute of Plant Protection, Chinese
Academy of Agricultural Sciences, Yuanmingyuan West Road No. 2,
Haidian District, Beijing, Beijing 100193, P.R. China
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KM386645.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2932
/organism="Apple geminivirus 1"
/mol_type="genomic DNA"
/isolate="China"
/host="apple"
/db_xref="taxon:2843704"
/country="China"
/collection_date="2013"
gene 265..561
/gene="V2"
/locus_tag="WX06_gp1"
/db_xref="GeneID:24018660"
CDS 265..561
/gene="V2"
/locus_tag="WX06_gp1"
/codon_start=1
/product="V2 protein"
/protein_id="YP_009129268.1"
/db_xref="GeneID:24018660"
/translation="MEAVFNHLVGKKLQPKDVLPAITAWICEKGTGQQLIDWVNGLEG
EKEAIFRALNSCSAEQEGEMEANDDGGSHEASPVRECVPAEPNEGAANRIISIS"
gene 383..1150
/gene="V1"
/locus_tag="WX06_gp2"
/db_xref="GeneID:24018656"
CDS 383..1150
/gene="V1"
/locus_tag="WX06_gp2"
/codon_start=1
/product="V1 protein"
/protein_id="YP_009129269.1"
/db_xref="GeneID:24018656"
/translation="MDSRGRKRPSFGPLTPAQLSRRVRWRQTTMAGAMRRLQYGNVYR
PNLMKARRTGSSLYPDKGYHDDEDSLDPFGVAGVRRHIDMPALGQGKNQRHTSKIKVW
SLNIKGVLHLAQVSTTETVVAEFFLLWSYRPNGAVLPDFNEIYTSGSTMTEVSNSLIA
RMKHEKLAEYKQLARKKITLVKPTNSSAGSNRKTFTVQLKFRGRNAKYLTFQENATLG
NWTDLKSGGFFYFIRFVSSDGNARMEGHVSSRMIYFH"
misc_feature 392..>823
/gene="V1"
/locus_tag="WX06_gp2"
/note="Geminivirus coat protein/nuclear export factor BR1
family; Region: Gemini_coat; pfam00844"
/db_xref="CDD:307130"
gene complement(1147..1551)
/gene="C3"
/locus_tag="WX06_gp3"
/db_xref="GeneID:24018655"
CDS complement(1147..1551)
/gene="C3"
/locus_tag="WX06_gp3"
/codon_start=1
/product="C3 protein"
/protein_id="YP_009129270.1"
/db_xref="GeneID:24018655"
/translation="MDSRTGESITPSQANYAVYTWSLKNPIYVSIDLIRPAYMSEDQQ
VHFTIKFNHNLRKALHLHKCWITCRIWTSLTTSAASSLRSRIEFHLMNYLDMVGVISV
NYVIEAINYFVKKCAWVLEVEQLRTDVKMLLY"
misc_feature complement(1207..1548)
/gene="C3"
/locus_tag="WX06_gp3"
/note="Geminivirus AL3 protein; Region: Gemini_AL3;
pfam01407"
/db_xref="CDD:279715"
gene complement(1298..1798)
/gene="C2"
/locus_tag="WX06_gp4"
/db_xref="GeneID:24018659"
CDS complement(1298..1798)
/gene="C2"
/locus_tag="WX06_gp4"
/codon_start=1
/product="C2 protein"
/protein_id="YP_009129271.1"
/db_xref="GeneID:24018659"
/translation="MPSLSFSPLHSSTPPQAPLNPLKRNCSCPEGEECVDDWKYDMPE
EPSRSQKIIHSKAKAAKRRRRVNCACGCIIYINPDCQEYGFSHRGVDYTISSELRRLY
LESEEPNICEHRPHSARIYVRGPTGPLHNQVQPQPQESLAPSQVLDNLSDLDELDDIC
SVLFEK"
misc_feature complement(1322..>1603)
/gene="C2"
/locus_tag="WX06_gp4"
/note="Geminivirus AL2 protein; Region: Gemini_AL2;
pfam01440"
/db_xref="CDD:279747"
gene complement(1740..2798)
/gene="C1"
/locus_tag="WX06_gp5"
/db_xref="GeneID:24018658"
CDS complement(1740..2798)
/gene="C1"
/locus_tag="WX06_gp5"
/codon_start=1
/product="C1 protein"
/protein_id="YP_009129272.1"
/db_xref="GeneID:24018658"
/translation="MPREPNTRRFKVQAKNYFLTYPRCSLSKEEALEQILGLNTPTNK
KFVRVCRELHEDGEPHLHVLIQFEGKYTCTNQRFFDLVSPTRSAHFHPNVQGAKSASD
VKTYIEKGGEFLDHGVFQIDARSARGQGQHLAEVYAEALNAPDASASLQIIKEKDPKT
FYTQYHNLSANAAKIFMAPPEPFRCIYLSSSFNNVPEELDDWVSVNIVSDPAARPRRP
KSIFIEGETRTGKTEWARSLGPHNYLCGHLDLSPKVFSNDALYNVIDDVDPHYLKHFK
EFCGSQRDWQSNTKYGKPLLVKGGIPTIFLCNPGPTSSYKEWLDEEKNSNLKNWALGN
AVFVFLSAPLFDPTTSSP"
misc_feature complement(2433..2771)
/gene="C1"
/locus_tag="WX06_gp5"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(2097..2390)
/gene="C1"
/locus_tag="WX06_gp5"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
gene complement(2399..2632)
/gene="C4"
/locus_tag="WX06_gp6"
/db_xref="GeneID:24018657"
CDS complement(2399..2632)
/gene="C4"
/locus_tag="WX06_gp6"
/codon_start=1
/product="C4 protein"
/protein_id="YP_009129273.1"
/db_xref="GeneID:24018657"
/translation="MGSLISTCLSNSKGSTHARINDSSTWYPQPDQHISIQTYRELRA
RPMSRPILRREGNFLTMEFSRSMPEVQGGRASI"
misc_feature complement(2420..2632)
/gene="C4"
/locus_tag="WX06_gp6"
/note="Geminivirus C4 protein; Region: Gemini_C4;
pfam01492"
/db_xref="CDD:279790"
ORIGIN
1 accggatggc cgcggatttt ggagacacct ttctcagccg ttggatttta atggctttca
61 aaatttaaat tttgaaaggg gacaggggtg gggacaaaag gaaaaaggac agattgatgt
121 gacgttttta cgctcttgtg ggccccacat ttgtctctta ttaactactt ttctctgtat
181 acaacttccc ctgcaagttt cggagtcttt tattagcgcc cttgtaattt gaataaatac
241 aattcaaatt caaattaggg tttaatggaa gccgtgttca atcatttggt gggaaagaaa
301 ttgcagccca aggacgtttt acccgccatt actgcttgga tctgcgagaa aggcacaggt
361 caacaactca ttgactgggt gaatggactc gagggggaga aagaggccat ctttcgggcc
421 cttaactcct gctcagctga gcaggagggt gagatggagg caaacgacga tggcgggagc
481 catgaggcgt ctccagtacg ggaatgtgta ccggccgaac ctaatgaagg cgcggcgaac
541 aggatcatct ctatatcctg ataagggcta tcacgatgac gaggatagcc ttgacccatt
601 tggagttgct ggggtcagga ggcatattga tatgcctgcg cttggacagg gcaagaatca
661 gaggcatacg tctaagatta aggtttggag cctcaacatc aagggggttc ttcatcttgc
721 acaagtgtcg actacggaga ctgtggtggc agaattcttt ctactatgga gttaccgacc
781 gaacggggcg gtattacctg atttcaatga gatctacact tctgggtcga cgatgaccga
841 ggtgagcaac tctctgattg cgaggatgaa gcatgagaag ctagctgagt ataagcagct
901 ggcgaggaag aagataacct tggtgaagcc caccaattct tcggcaggct caaatcgaaa
961 gacctttacg gttcagttga agttcagggg gaggaacgcc aagtacttga cgttccagga
1021 gaatgcgacg ttgggcaatt ggacggatct taagtcgggg ggtttctttt attttattag
1081 gtttgtaagc agcgatggga atgcgaggat ggaaggacat gtatcttctc gaatgatata
1141 tttccattaa taaagaagca tttttacatc agttcttaat tgttctactt ctaacaccca
1201 cgcacacttc ttaacaaaat aattaattgc ctctattaca taattaactg aaatgactcc
1261 taccatatct aaataattca ttaaatgaaa ttctattcta cttctcaaag aggacgctgc
1321 agatgtcgtc aagctcgtcc agatccgaca ggttatccag cacttgtgaa ggtgcaaggc
1381 tttcctgagg ttgtggttga acttgattgt gaagtggacc tgttggtcct ctgacatata
1441 tgcgggccga atgaggtcga tgctcacata tattgggttc ttcagactcc aggtatagac
1501 ggcgtagttc gcttgagatg gtgtaatcga ctcccctgtg cgagaatcca tactcctggc
1561 agtctggatt tatgtagatg atgcaaccgc aggcgcagtt aactcttctt cttctcttgg
1621 ctgcctttgc tttggagtgg attatcttct gtgaccgaga gggttcttct ggcatgtcgt
1681 acttccaatc gtccacgcac tcttctcctt ctggacaaga gcaattcctc tttaagggat
1741 taaggggagc ttgtggtggg gtcgaagagt ggagcggaga gaaagacaaa gacggcattt
1801 cctaaagccc aatttttcaa atttgaattc ttctcttcgt ccaaccactc tttataactg
1861 cttgtaggcc caggattgca gaggaagatt gttggtatgc cccctttaac aagtagtggc
1921 tttccatact tcgtattgct ttgccagtct ctctgggacc cacagaactc tttaaagtgc
1981 ttcagataat gcggatcgac gtcatcaatg acgttgtata acgcatcatt gctaaacacc
2041 ttgggagaga gatcaagatg tccacataag taattatgtg gtcctaagct tctggcccac
2101 tcagtttttc cagttcttgt ttctccctca ataaaaatac tcttcggtct tcttggccgc
2161 gcagcgggat cacttacaat attaacactc acccaatcat ctaactcctc tggcacatta
2221 ttaaaagaag aactaagata aatacatcta aagggctccg gaggagccat aaatattttg
2281 gctgcattag cagacaaatt atgatactgc gtataaaaag tcttaggatc cttctcctta
2341 attatctgca gcgaagctga tgcgtcagga gcatttaatg cttctgcgta gacttcagct
2401 aaatgctggc cctgccccct tgcacttctg gcatcgatct ggaaaactcc atggtcaaga
2461 aattcccctc ccttctcaat ataggtcttg acatcggacg cgctcttagc tccctgtacg
2521 tttggatgga aatgtgctga tctggttggg gataccaggt cgaagaatcg ttgattcgtg
2581 catgtgtact tcccttcgaa ttggataagc acgtggagat gaggctcccc atcttcgtgt
2641 agctctctgc aaactctaac gaatttctta ttcgtaggag tatttagccc tagaatttgt
2701 tctagggctt cttctttgct aagagagcac ctgggataag tgaggaagta attcttggct
2761 tggactttaa aacgacgtgt gttgggctct cgtggcattt ttgtaattaa aggggtgtct
2821 ccagatgaga gctcctggca acttatctat tgaattggag actggagaca atatataggg
2881 gttagagtta cttaggggtt ggggggcacg tggcggccat ccgtataata tt
//
