LOCUS NC_027197 3753 bp DNA linear VRL 21-DEC-2020
DEFINITION Phytophthora parasitica virus isolate 1 ORF3, putative replication
protein, and putative capsid protein genes, complete cds.
ACCESSION NC_027197
VERSION NC_027197.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Phytophthora parasitica virus
ORGANISM Phytophthora parasitica virus
Viruses.
REFERENCE 1 (bases 1 to 3753)
AUTHORS Zhi,N., Hu,G., Li,J.G., Wong,S. and Young,N.S.
TITLE A novel Parvovirus-Circovirus hybrid virus genome discovered in
Phytophthora Parasitica
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3753)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2015) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3753)
AUTHORS Zhi,N., Hu,G., Li,J.G., Wong,S. and Young,N.S.
TITLE Direct Submission
JOURNAL Submitted (03-JUL-2014) Hematology branch, National Heart, Lung and
Blood Institute, National Institutes of Health, 9000 Rockville
Pike, Bethesda, MD 20892, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KM105953.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3753
/organism="Phytophthora parasitica virus"
/mol_type="genomic DNA"
/isolate="1"
/host="Phytophthora parasitica"
/db_xref="taxon:1608451"
/country="USA"
/collection_date="15-Apr-2014"
repeat_region <1..79
/note="inverted terminal repeat"
/rpt_type=inverted
gene complement(146..604)
/locus_tag="AB462_gp1"
/db_xref="GeneID:24420522"
CDS complement(146..604)
/locus_tag="AB462_gp1"
/codon_start=1
/product="ORF3"
/protein_id="YP_009142779.1"
/db_xref="GeneID:24420522"
/translation="MAHEQHHNIVTELVESFIVEENKALHDKLRTALNEAQALRLRLT
RLNTLYNMAGGLNGRMQQELRDLHAAIEMMDLIAREYFINNAEARARWAPYCAFEDDE
FHHLIAEANAGFPSDLAIVMEPTQEDEDDRDSVIDILELTEKEMRDFMDV"
gene 843..2039
/locus_tag="AB462_gp2"
/db_xref="GeneID:24420520"
CDS 843..2039
/locus_tag="AB462_gp2"
/note="rep"
/codon_start=1
/product="putative replication protein"
/protein_id="YP_009142780.1"
/db_xref="GeneID:24420520"
/translation="MAPLVPFHTMDRQWDARFNVPTDEDLEALLLNVKSEVDQGKFQY
CLVGGVEIGDRPYQTDYLIKHVHVALVYNNRVSKNSVLKNLQIKQGNGYYLVPRNRDL
PIQGWIDHHTKSKTKINEDFKLYEYGTLPADKPNISAQVTKRSPEEKKRKLDDVIKEM
RGMIEEGREEEAFTKFPRNYLTYGEKLKAMISQRRDFFKSNGDPHIWLTGTPGSGKSA
ILQVIYPAYYNKNLDNRFFDLYQPKVHTHMLLQDVDHTTVEKLGVQFLKTICDEAGFP
VDQKYKTPQLARTTVLVSSNFTINDVIPEDMPGRNENLTALRRRFYEVNVRVLLQILG
LKLLSKYELNGLKRVGNQDPTKLFMSWDYTRDIPTGESLKTAKEYQQIIKDHYYGTNT
SPHSSQ"
gene 2050..3390
/locus_tag="AB462_gp3"
/db_xref="GeneID:24420521"
CDS 2050..3390
/locus_tag="AB462_gp3"
/note="cap"
/codon_start=1
/product="putative capsid protein"
/protein_id="YP_009142781.1"
/db_xref="GeneID:24420521"
/translation="MWDLTLPGYKYLGPGNKLDKGESNNENDRVALAHDIAYDFLEKK
GFNPYTQYGKDDERAYQEFSFNDYGGALGKLYFGIKRNAAKAGLVGPPGKRLRGKHWD
DKKDGQSPGEPSLPNSTDNAQVNFQNTMNGNGSGEGDGSGNQAGLRETPIDNPYVVFR
GPPDYTFASLPYVETRYAGIADYYSRDHIFRLTSPYDCSQANSVVGINAGAGVTNITP
ESADGTLQSARWFNYYSGLYNYYHVVSCQYNVFVENLSTEPLWVYRLFYNDDQPNTLA
SNDDMQLWPNTMYHYLDRRALAITGTGKVEVAGEHPDDTINAENINSTALIDNFENTN
MVANNGVSKCVISGEYRTGQHTGEIRLDSSVENWTATNTNPLLPEKLLIRVKPVNDTV
RLNSATSSGDDLKYKIVVKLNYLVEFKELPVGLRYPVQRQPLTVTIAADVESTN"
misc_feature 2059..2289
/locus_tag="AB462_gp3"
/note="Parvovirus coat protein VP1; Region: Parvo_coat_N;
pfam08398"
/db_xref="CDD:429973"
repeat_region 3675..>3753
/note="inverted terminal repeat"
/rpt_type=inverted
ORIGIN
1 atagagctcg agctctgcca ccgccgggta aaactaatag aaaagaagta cagcgctacg
61 cttgtacctt ctttcacact attcatacaa tcattcttaa gacaaacaac aatcattcag
121 atgaaatgag acatgtatta tgtagttaca catccatgaa atcgcgcatt tccttttccg
181 tcagctccaa gatgtcgatg accgagtcac gatcatcttc atcttcttgg gttggctcca
241 tcacgatggc caagtccgac ggaaatccag cattcgcttc cgcaatcaaa tgatgaaact
301 cgtcatcttc gaacgcacag tacggggccc aacgcgcacg ggcctccgcg ttattgatga
361 aatattccct cgcgatcaga tccatcatct caatcgctgc atgcaaatct cgcagctctt
421 gctgcatgcg accgttcagt cctcccgcca tgttgtacaa cgtgttcagg cgagtaaggc
481 gtagacgcaa cgcctgcgct tcgttcaagg ccgtacgtag cttgtcatgg agcgccttgt
541 tctcttcgac gataaaactc tcgacgagtt ccgtcacgat gttatggtgt tgttcgtgcg
601 ccatggcaga ttcctgccgc aaggtaaaag atctcaacgt acctctagga ggtaacgttc
661 catatttcta accgcggtaa gaaacatttg tattcatgtt caagtaccat cattctattt
721 agaaattttt ctatgttcta ttacagagac actcctctat acgaacaaag acattcacaa
781 aagtccgtta gctcatttcc aatcttaccg gcaaataaaa acttctcttc tctccaacaa
841 ccatggcccc tcttgttcct ttccacacta tggaccgtca gtgggacgca cgcttcaatg
901 tacctaccga tgaagatctc gaggctctcc ttctcaatgt caagagcgaa gttgaccaag
961 gaaagttcca atactgcctc gtcggtggag tagagatcgg tgatcgtcct taccaaacgg
1021 actacctcat caagcacgtg cacgtagctc tggtgtacaa taaccgcgtc tcgaagaact
1081 ccgtgctgaa gaatcttcaa atcaagcaag gcaatggcta ttaccttgtt ccacgtaacc
1141 gtgatctgcc tatccaaggc tggatcgatc atcacaccaa gtcaaaaacg aaaatcaacg
1201 aggacttcaa gctgtatgag tacggcactc tacctgctga caaacccaat atctctgctc
1261 aagtgaccaa gagatcgcca gaggaaaaga agagaaaact tgacgatgtc atcaaggaga
1321 tgcgaggcat gatcgaagaa ggacgcgaag aggaagcctt caccaagttt cctcgaaact
1381 acttgaccta tggagaaaag ctgaaagcta tgatctcaca gcgtcgtgac tttttcaaga
1441 gcaacggtga ccctcacatc tggcttactg gtactcctgg ttctggcaag tctgccatct
1501 tgcaggtcat ctatcctgcg tattacaaca agaatctgga caaccgtttc ttcgacttgt
1561 accagccaaa agtgcacacg cacatgcttc ttcaagatgt cgatcacacg acggttgaaa
1621 agttgggagt ccagttccta aagaccatct gtgacgaagc tggtttccca gttgaccaaa
1681 agtacaagac gccgcaactg gctcgtacca ctgtcttggt ctcttccaac ttcaccatca
1741 acgatgtgat tccggaagac atgccaggac gcaatgaaaa tctaacggct ctgcgtcgtc
1801 gcttctatga agtgaacgtt cgtgttcttt tgcagatact cggactgaag cttctgtcga
1861 agtacgaact gaacggcttg aaacgcgtgg gaaatcaaga tccaaccaaa ctcttcatgt
1921 cgtgggatta cactcgtgac attcccactg gagagtcgtt gaagactgcc aaggaatacc
1981 agcagatcat caaggatcac tactacggaa cgaacacttc gcctcactcg agtcagtaag
2041 taaaagacga tgtgggactt aacactgcca ggatacaagt atctaggacc aggaaacaaa
2101 cttgacaagg gagaatcaaa taacgagaat gacagagttg ctttagcaca tgatattgct
2161 tatgatttct tggaaaaaaa aggattcaat ccatatacac aatatggaaa agacgatgaa
2221 cgagcatatc aagaattctc atttaacgat tacggtggag cgctaggaaa actgtacttt
2281 ggtataaaac gtaatgcagc aaaagctgga ttagtaggac caccaggaaa gcgtcttcga
2341 ggaaaacatt gggacgataa aaaagatggt caatcacctg gagaaccatc attgccgaat
2401 tcgactgata acgcacaagt caacttccag aatactatga acggaaatgg aagtggtgaa
2461 ggtgacgggt ctggtaacca agccggtctt cgagagactc caatcgataa tccctatgtc
2521 gtgttcagag gaccaccaga ctatacgttc gcgagtctgc cgtatgttga aacgcgatac
2581 gcgggtattg cagactacta ttcgagagat catatctttc gtctgacctc accatacgat
2641 tgttcgcaag ccaattctgt tgttggcatt aacgctggtg ctggtgttac aaacattact
2701 cctgagagcg ctgatggaac gttgcaatcg gcccggtggt ttaactacta ctccggacta
2761 tacaactact atcatgtggt atcgtgccag tacaatgtgt ttgtggagaa cttatctaca
2821 gaacctttgt gggtataccg actcttctac aacgatgacc agccaaatac actggctagt
2881 aacgacgata tgcagctgtg gccaaacaca atgtaccact atctcgatcg ccgtgctctt
2941 gctatcactg gaactggaaa agttgaagtt gcaggagaac atcctgatga caccatcaat
3001 gctgagaaca tcaactcgac tgccttgata gacaattttg agaatacgaa catggtggca
3061 aacaatggtg tatccaagtg tgtcatttct ggagaatacc gtactggtca acacacagga
3121 gaaattcgtt tggattcatc agttgagaat tggacggcta ctaacacaaa ccctctactt
3181 ccggagaaac tattgattcg tgtgaagcct gtgaatgata cagttcgtct aaacagtgct
3241 actagttctg gtgacgatct taagtacaag attgttgtga agctgaacta ccttgtcgag
3301 ttcaaggaac ttcctgtcgg tctacgttat ccagtgcaaa gacaaccttt gactgttaca
3361 attgctgctg acgtggagtc tacgaactaa tggttcacac aagaaggcaa atccgtcgtg
3421 cgcacgatga ctatcttcaa gcgatacgga attcggttgt acaccaacga caaccaaggc
3481 gtaacttttg ggatcaagtg agtcaacatg gatgggaaca gatgcttcta aatgcgagac
3541 gtcaagtgtt tcctaagaga tataaaccag aggatactgc gcatcgtcac cgtctagaag
3601 gtgagcaaga taaggatgtg tctgtgcgta gttataccag acgtagttta agaaaatgta
3661 tttgatttct gattgtgtta aagaatgtac aagcgtagcg ctgtacttct tttctattag
3721 ttttacccgg cggtggcaga gctcgagctc tat
//
