LOCUS NC_027426 7025 bp RNA linear VRL 13-AUG-2018
DEFINITION Astrovirus Er/SZAL6/HUN/2011, complete genome.
ACCESSION NC_027426
VERSION NC_027426.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Astrovirus Er/SZAL6/HUN/2011
ORGANISM Astrovirus Er/SZAL6/HUN/2011
Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes;
Stellavirales; Astroviridae.
REFERENCE 1 (bases 1 to 7025)
AUTHORS Pankovics,P., Boros,A., Kiss,T., Delwart,E. and Reuter,G.
TITLE Detection of a mammalian-like astrovirus in bird, European roller
(Coracias garrulus)
JOURNAL Infect. Genet. Evol. 34, 114-121 (2015)
PUBMED 26096774
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7025)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (27-JUN-2015) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 7025)
AUTHORS Pankovics,P., Boros,A., Kiss,T., Delwart,E. and Reuter,G.
TITLE Direct Submission
JOURNAL Submitted (16-JAN-2015) Regional Laboratory of Virology, ANTSZ
Baranya County Institute of State Public Health Service, Szabadsag
u. 7., Pecs, Baranya H-7623, Hungary
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KP663426.
##Assembly-Data-START##
Assembly Method :: GenDoc v. 2.7
Sequencing Technology :: 454; Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..7025
/organism="Astrovirus Er/SZAL6/HUN/2011"
/mol_type="genomic RNA"
/strain="Er/SZAL6/HUN/2011"
/isolation_source="fecal sample"
/host="Coracias garrulus (European roller)"
/db_xref="taxon:1671382"
/country="Hungary"
/collection_date="Jul-2011"
gene 20..2845
/locus_tag="ACT29_gp1"
/db_xref="GeneID:24917323"
CDS 20..2845
/locus_tag="ACT29_gp1"
/note="ORF1a"
/codon_start=1
/product="nonstructural protein"
/protein_id="YP_009154705.1"
/db_xref="GeneID:24917323"
/translation="MAGSGAFYASKVDAAMNLGSFAARSRITTSMQQELRKLYHDQNV
PWTFHHVPKLLIYPAPTNDYHKRVVVASAVDFENEWCTYVWDDDWKPIPPSVPVPPGA
LVGVMLNQKARDKEQILALKQELSEQRVQNGWLVHQLARYRQASHPTPPRSGLSKATL
ALCVLIFFMSFWLSTNATETEEQKPARSQRYEEIQERIEQLLNQRIRNMEIANYYNTW
VGYAEDQWRILVEKLYDSGDWYFVLFLDGLKWTLENHIWHMVSVVMAVLSLWKGTNPR
LAVLYLAAATISTMRFAMLAIAPWHTPTSATVCTVVALIYMMFSINSPSHSWAPGHRR
CSFLGCVLPDASYIQHMKAHTVTAIVFLAAHAFVTVGVSPSYIGFALVLYRCYTLLPA
TAGATIEVRDVSGKVTHKVNTPPNAVFRFAQKAKAVVSKMARFSQLRTGVSPMVRASP
GALVIIETKDGKGSGFAAGNYIVTAEHVVGTAQSVQVHYNGASYPTTVHRTFPGRDIA
LLKMPHPLQGAIQRLKIAKTPKYDWVCVTAPTPEGALLTSVTPGMCHGTTISYATPTI
DGMSGAPVVDENGHVLGVHQTNTGYTGGAVVIRPEDLLDAPKENPQVRALQEEIAALK
AQLQQCQVPATKPDLDIVALVREAMQREMQILREELADELGDEFNQGKKSRTAGRKKN
KRGRGRMKTQPGYHHAARRRQRGPMFTEQQYQEMLDSGMTVDEIKALAEYLYEQQNEE
AGFPEWSDYEASDDDWQFGEDDYNDEYSRRTGKRDRMAKDMGLDPSDLEGQPGWNENP
ASVIRVGSKGVWNSTFGMKQCKTPPVVCDDVPKYEDYPEFDVTSVGRACCETTLAERK
LLGAEILNVMKAAANGDLTRAVYDIDRKAQELGLEKFSQRLKPKAKQQPKNGGKGTQD
SSKQQGPQNPSTSQAPPSPKKAQKKTN"
misc_feature 1406..1771
/locus_tag="ACT29_gp1"
/note="Trypsin-like peptidase domain; Region: Trypsin_2;
pfam13365"
/db_xref="CDD:433149"
gene 2860..4344
/locus_tag="ACT29_gp2"
/db_xref="GeneID:24917321"
CDS 2860..4344
/locus_tag="ACT29_gp2"
/note="ORF1b"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="YP_009154706.1"
/db_xref="GeneID:24917321"
/translation="MVEPPFRWLVPEQYPVVCSLPVKRPVIDNHIPNENMLGVLPPPN
TDRFDEYGPTIWGPEAYAVSFEKFHYKEPIDFFKEHPVECEFADKAWRMHFAYLTDTR
VVHITATEKNLESTPAFPKHLEYTTEREYLEEKGWTPYEREFAGIDKGATPDVLWYLF
MKKEVLKQEKIDKGDVRQILCADPIYGRIGACLEQHQNNLMKQACEQSSGQCGWTPFG
GGFQRLIRRLERPGAYYIEFDWTRFDGTIPTALFMHIKKLRWSLMNEKHRKRYLHVYR
WYCKNLVHRYVLLPSGEVTRQNRGNPSGQISTTMDNNMVNYWLQAFEFCYFHGPDWQK
WAGYDTIVYGDDRLSRTMHLPSNYEERVVKMYGDIFGMWVKPEKVKVARDLVGLTFCG
FEIGEGFTPIPAQPYKLMASLLKPAATLKDFNTLHGKLLSFQILMAHAPKDHPFREYL
EHCLAATADYISSDLPKRFTDEQLRLLWEGGPRDGWRDGQTEKG"
misc_feature 3319..4035
/locus_tag="ACT29_gp2"
/note="catalytic core domain of RNA-dependent RNA
polymerase (RdRp) in the family Astroviridae of
positive-sense single-stranded RNA [(+)ssRNA] viruses;
Region: ps-ssRNAv_Astroviridae_RdRp; cd23172"
/db_xref="CDD:438022"
misc_feature 3559..3603
/locus_tag="ACT29_gp2"
/note="conserved polymerase motif A; other site"
/db_xref="CDD:438022"
misc_feature 3760..3831
/locus_tag="ACT29_gp2"
/note="conserved polymerase motif B; other site"
/db_xref="CDD:438022"
misc_feature 3871..3915
/locus_tag="ACT29_gp2"
/note="conserved polymerase motif C; other site"
/db_xref="CDD:438022"
gene 4175..6946
/locus_tag="ACT29_gp3"
/db_xref="GeneID:24917322"
CDS 4175..6946
/locus_tag="ACT29_gp3"
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="YP_009154707.1"
/db_xref="GeneID:24917322"
/translation="MLPKTIPLGSTWSTAWPPLPTTSAVISQRDSLMSSYGYSGRVDQ
EMAGVMARQKKAKQPAPGQKNKARNTKRRQKNKAKKQTIKLQIQPRSRGRRTGRGRGS
TRRGPRAAVTQQVTATLGTVGVNSGNKVELEMSALINPALIKEVTGSNQFGPIQIYAA
TYSQWRLKHLKLTLTPLVGASAVSGTVVRASLNMSATPSSSSWSALGARKHIDTTPGR
PATFVLQARDIPGPKEGWFNTLTKGDPLSYLGGALEIHTYGKTMSTYQAKEFEGQLFL
VEMTATWEFANFSPSPGMLNLVKGDSNGDTGNITIKAQAGEPIELEVPSTTRFARASG
GDGSASEIIWQVVDTAVDVATSAFPPPFNWLFSGGWWFIKKVAGASTRAGVDTFRVYS
SIQDANTSTPCIASVTQDTTIPVSGFNYIQVTPGNTGLAEASGQVGRAVEPLDPDQIL
WPNEYQVIAGLSSSIGPLLFNYVRSPQITNFQGFCLTSNYTRPDATNTVPLSFAYKVT
PLDPAHSGVYQMTATGYVDSTPTSDGVPLYCMTRDSSGTAAMQVVGQVYAAQSITLTP
TSATRQVQIQIFLAQLTRTGRYRIDLGSVEGHPATMNIVASGNRFVNQIQTGNVSSIT
IQFNADYNQGEWYVLMNYNVSPSNVFTIGDFGVARSTEATQTNGYWNVTALQQFCGLS
PSPAAPLKFQQFRNTTITRAAAEPPNLQQEDEEDYAELVEACRLALEEAGLEEVTDTD
TDTDSDTDIYTSEDEDLGGTEESDDEPQVPPPLSQTMRSSCGEFEPDPDDPHPEWMQR
NSQRVKWKTIKEEIPASAGGLEPCSGCGLVGAHPACPPKSRGESYSTPPLLIMTKLSA
EGRKVRKQLRDSGFDDYEAVRMAQAVKPHPSLTAFQDVYKESLYGGFSPATAREIAWC
SAVGALNLQ"
misc_feature 4283..5425
/locus_tag="ACT29_gp3"
/note="Astrovirus capsid protein precursor; Region:
Astro_capsid_N; pfam03115"
/db_xref="CDD:367340"
ORIGIN
1 ccacagatgg ctggccacga tggctggttc cggggcgttt tacgcttcta aagttgatgc
61 agcaatgaac ttgggcagct ttgccgcacg ctcccgcatc acaacatcga tgcaacagga
121 gctgcgcaag ctgtaccatg accagaacgt tccttggaca ttccaccatg tgcccaagtt
181 actcatctat cctgcgccaa ccaatgacta ccacaaacgc gtagtggttg cgtctgcagt
241 tgattttgaa aatgagtggt gcacatacgt ctgggacgat gactggaaac ccataccacc
301 ttctgtgcct gtaccacctg gcgcactggt tggggtcatg ctcaatcaga aagcacgcga
361 caaggagcaa atccttgctc tgaaacaaga actctcagag cagcgcgtac agaatggctg
421 gttggtgcat caacttgccc ggtaccgcca ggctagccat cccactccgc ctaggagtgg
481 actctcaaaa gcaacacttg cactatgtgt gcttatcttt ttcatgtcct tctggctttc
541 gaccaatgca actgaaactg aggaacagaa accggcaaga tcacaacgct atgaggaaat
601 ccaagagaga attgaacagc ttcttaacca gcggataagg aatatggaaa tagccaacta
661 ctacaacacc tgggttggtt atgcagaaga ccagtggcgt atcttagtgg aaaaactcta
721 cgattcaggc gactggtact tcgtcctttt cctcgatggc ttgaagtgga ccttggagaa
781 ccacatctgg cacatggtat ctgtggtaat ggcagtcttg tcactctgga aggggaccaa
841 tccacgcctt gcggtcctct acctggcagc cgcaacgatt tccactatgc ggtttgctat
901 gcttgccatt gccccttggc acacgccaac tagtgccacc gtgtgcacag tggtcgcctt
961 gatctacatg atgttctcca tcaacagccc tagccatagc tgggctccag gccatcgccg
1021 ctgttccttc cttggatgtg tcctacctga tgcctcatac atccaacaca tgaaggcgca
1081 caccgttacg gcaattgtct ttcttgctgc acatgccttt gtcactgtgg gtgtgagccc
1141 tagttacata ggctttgccc tagtcctcta caggtgctac acactcctgc cagccacagc
1201 tggcgccacc atagaggtcc gggatgtcag cgggaaagtc acacacaagg tcaacacacc
1261 accaaacgcc gtattccggt ttgcacaaaa ggccaaagca gttgtgtcaa aaatggctag
1321 gttttcccaa ctgcgcacag gggtgtcacc aatggtccgc gcttcaccag gcgcacttgt
1381 catcattgag acaaaggatg ggaagggctc tggattcgct gctggcaact acatcgtcac
1441 agctgaacat gtagtgggca ccgcacaatc ggttcaagta cactacaacg gagcttctta
1501 ccctaccact gtccatagga ccttccctgg acgcgacata gccttgctga agatgccaca
1561 tccacttcag ggtgcaatac aaagactcaa gatcgcaaag acaccaaaat atgactgggt
1621 ctgtgtcacc gcgccaaccc cggaaggggc actgctcacg tccgtcactc ctggcatgtg
1681 ccacgggact accatctcct acgccacacc aaccatcgat ggcatgagtg gcgcaccagt
1741 tgttgacgag aatgggcatg tcctaggtgt tcaccagacg aacactggat acaccggagg
1801 tgcggttgtg atacgacctg aagaccttct tgacgcaccc aaggaaaatc cacaagtgag
1861 agccctccag gaagaaatcg cagctctgaa ggcacaactc caacaatgcc aggttcctgc
1921 tactaagccc gaccttgaca tcgtcgcact cgtacgggag gcgatgcagc gggagatgca
1981 gatactgcga gaagaacttg ctgacgaact tggggatgaa ttcaatcaag gaaagaaaag
2041 ccgcactgct gggcgcaaaa agaacaagcg tgggcgtggc cggatgaaga cccaaccagg
2101 ctaccaccat gcagctcgcc gccgccagcg cggtcccatg tttaccgagc aacaatacca
2161 ggagatgctt gacagcggca tgacagttga tgagatcaag gccctagccg aatacctcta
2221 tgaacaacaa aatgaggagg ctggtttccc tgaatggtcg gactatgaag cctcagatga
2281 tgattggcaa ttcggcgaag atgattacaa tgatgaatac agccgccgca ctgggaagag
2341 agatagaatg gccaaggaca tgggacttga tcccagtgac cttgaaggcc aacctggctg
2401 gaatgagaat ccagcctcag tcatcagggt tggttcgaag ggagtctgga actccacctt
2461 tgggatgaaa caatgcaaga caccaccagt tgtctgcgat gacgtcccca aatatgaaga
2521 ctaccctgag tttgacgtca ccagtgttgg gcgtgcctgc tgtgaaacaa cactcgctga
2581 aaggaaattg ctcggcgcag agatcttgaa tgtgatgaag gctgccgcta acggcgacct
2641 cacacgtgcc gtctatgaca tcgacaggaa ggcacaggag ctcggccttg agaaattttc
2701 ccagcgtctc aagccaaaag caaagcagca gccaaaaaac gggggcaagg ggacccagga
2761 ttccagcaaa cagcagggtc cccagaatcc atcaacatcc caagcccccc cttcgccaaa
2821 gaaagcacag aagaagacca actagactac tggaagaaaa tggttgagcc gccctttcga
2881 tggctggttc ccgagcaata cccagtagtc tgttccctac ctgtaaaaag accagtcata
2941 gacaaccaca taccaaatga gaacatgtta ggggtcttac caccacccaa tacggacagg
3001 tttgatgaat acggcccgac catctggggc cctgaggcct atgcagtctc gtttgagaaa
3061 ttccactata aggaacctat agacttcttc aaagaacatc cagtggagtg tgaatttgct
3121 gacaaagcat ggcgaatgca tttcgcttac ctaactgata ccagggtagt tcacataacc
3181 gctactgaga agaacctaga gtccacaccg gcatttccta aacatctgga atataccacg
3241 gaacgtgagt accttgaaga gaagggctgg acgccatacg aacgcgaatt cgccgggatc
3301 gataaaggtg ccacaccgga tgtgctctgg tatcttttca tgaagaagga ggtccttaag
3361 caggaaaaga ttgacaaagg tgatgtccgc cagatactct gtgccgatcc catatacggt
3421 agaattggcg cctgccttga gcagcatcag aataacctca tgaagcaggc ctgtgagcaa
3481 agctccgggc agtgtgggtg gacacccttt ggaggggggt tccaacgcct cattaggcgc
3541 ctagaaagac caggtgccta ttatattgag tttgactgga cccgttttga tgggactata
3601 ccaactgcgc tcttcatgca tattaagaag ctgcgctggt ccctgatgaa cgaaaaacac
3661 cggaaacggt atttacacgt ataccgctgg tactgtaaga accttgtaca ccggtacgtg
3721 ctcttaccct ctggtgaggt cacacgtcaa aaccgaggca acccctcagg acagatctca
3781 acaacgatgg acaacaacat ggtaaactac tggctgcagg cctttgaatt ctgctacttc
3841 catggacctg actggcagaa atgggcaggc tatgacacca tcgtctatgg agacgatcgc
3901 ctgtccagga cgatgcactt accatcaaac tatgaagaac gcgtcgtcaa aatgtatgga
3961 gacatctttg gtatgtgggt aaagcctgaa aaagtcaaag tcgcgcgaga cctcgtagga
4021 ttgacattct gcgggtttga aattggtgaa gggttcacac ccatccccgc gcaaccctac
4081 aaactcatgg catccttgtt aaaaccagca gcaaccttga aagacttcaa tactcttcat
4141 gggaagctac tctcattcca gattctgatg gcacatgctc ccaaagacca tccctttagg
4201 gagtacctgg agcactgcct ggccgccact gccgactaca tcagcagtga tctcccaaag
4261 agattcactg atgagcagtt acggctactc tgggagggtg gaccaagaga tggctggcgt
4321 gatggccaga cagaaaaagg ctaaacagcc tgccccaggg cagaagaaca aggcgcgcaa
4381 caccaagcgc cgccaaaaga ataaggcaaa gaagcagacc atcaagcttc agatccaacc
4441 aagatctaga ggtaggcgca cgggccgtgg tcgtggaagc acgcgccgcg gaccccgtgc
4501 cgcagtgacc cagcaggtaa cagctacact gggcactgtt ggtgtaaact ctggaaataa
4561 ggtagagcta gagatgagcg cgctcatcaa tcccgcgctc atcaaggagg tcactggtag
4621 caaccagttt ggccccatcc agatttatgc tgccacctac tcccaatgga ggctcaagca
4681 ccttaagcta acgcttaccc cccttgttgg agctagtgcg gtgtcaggga cggtcgtgcg
4741 ggcttctctt aatatgtccg ccaccccctc atcgtctagc tggagtgcac ttggtgcgcg
4801 gaagcatatc gacaccacac ctggtcgtcc cgccaccttt gtgctccagg cccgtgacat
4861 ccctgggccc aaggagggtt ggtttaacac cctaaccaaa ggtgaccctc tgagctacct
4921 agggggtgct ctggagatcc acacctatgg aaagaccatg tctacctacc aagccaagga
4981 atttgaggga cagctcttcc tagttgagat gaccgccaca tgggagtttg ccaacttttc
5041 tccctcaccc ggaatgctga acctagtgaa aggggattct aacggggaca ctggcaacat
5101 caccatcaag gcacaagccg gggaacccat agaacttgag gtcccctcaa caacacgctt
5161 tgcccgagct agtggtggag acggatctgc ctctgaaatc atctggcagg tcgtcgacac
5221 cgctgtcgat gtggcaacaa gtgcctttcc cccccccttc aactggctct tctccggtgg
5281 ctggtggttc atcaagaagg ttgcaggcgc ttccactcgc gccggggtcg acaccttccg
5341 tgtctactcc tcaatccaag atgccaacac ttccacacca tgcattgcaa gtgtgactca
5401 ggacacaacc atcccagtta gtggcttcaa ctacatccaa gtaacaccag gaaacacagg
5461 acttgcagag gcatcgggcc aagtcggtcg ggcagttgag cctctggacc cagatcagat
5521 actctggcca aatgagtatc aggtgatcgc ggggcttagc tcctccatag ggcccctgct
5581 tttcaactat gtgagatcac cacaaatcac aaacttccag ggcttctgcc taacctctaa
5641 ctacaccaga cctgatgcca caaacactgt gccactctcc tttgcataca aagttacacc
5701 cctggatcca gcacatagcg gtgtctatca aatgacagca actggttatg ttgattcaac
5761 ccccaccagt gacggggttc cactctactg catgacccgt gacagctcgg gaacggccgc
5821 aatgcaggtc gttggccaag tctatgctgc tcagagcatc acactcactc ccaccagtgc
5881 aaccaggcaa gtgcagattc aaatctttct tgcacagctt acccgcactg gtaggtacag
5941 aatagacctt ggttccgtgg agggacaccc tgccaccatg aacatcgtgg ccagtgggaa
6001 ccgctttgtg aatcagatac aaacaggaaa tgtcagctca attaccatcc agtttaacgc
6061 tgactacaac cagggtgagt ggtacgtcct tatgaactac aatgtgagcc cctccaacgt
6121 cttcacaatt ggagacttcg gagtggcgcg ctccactgaa gccactcaaa caaatggcta
6181 ctggaatgtc actgcactac aacaattctg tggtctttca ccctcgcctg cagcacctct
6241 caagttccag caattccgga acacaacaat cactcgtgct gctgcggaac ctcctaacct
6301 ccaacaggag gatgaggagg actacgcgga gctcgttgaa gcgtgccgct tggcactcga
6361 ggaggctggg cttgaggaag tgacggacac agacacagac actgactcag acactgacat
6421 ctacacctct gaagatgaag atctcggtgg gaccgaggag agcgatgacg aaccgcaggt
6481 gccgccgccc ctctcccaaa ctatgagatc aagttgtgga gaattcgaac cagacccaga
6541 tgatccacac ccagaatgga tgcagaggaa ctcacagaga gtgaagtgga aaactatcaa
6601 agaagagatt cccgcgtctg ccggcgggct tgagccatgc agtggctgtg gtctcgtggg
6661 tgcgcacccc gcatgtccac caaaatctcg cggagagagc tactcaacac ctccacttct
6721 cataatgacc aagctctccg cagaaggcag aaaagtgcgt aaacaattgc gcgactcggg
6781 tttcgatgat tacgaagccg tgaggatggc gcaggcggtt aagccacatc catcgctaac
6841 cgctttccaa gacgtctaca aagagagcct gtacggaggc ttctcccccg ctaccgcgag
6901 ggagatagca tggtgcagtg ctgtaggcgc attgaacctg cagtgagctg tctatggcca
6961 cgcagttctt tctatccctt tcagatgagc tttttaatga taattaggca ttatttggca
7021 aatct
//
