LOCUS NC_027792 1895 bp DNA circular VRL 13-AUG-2018
DEFINITION Palaemonetes kadiakensis Mississippi grass shrimp associated
circular virus isolate I0099, complete genome.
ACCESSION NC_027792
VERSION NC_027792.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Palaemonetes kadiakensis Mississippi grass shrimp associated
circular virus
ORGANISM Palaemonetes kadiakensis Mississippi grass shrimp associated
circular virus
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Arfiviricetes; Cirlivirales; Circoviridae.
REFERENCE 1 (bases 1 to 1895)
AUTHORS Rosario,K., Schenck,R.O., Harbeitner,R.C., Lawler,S.N. and
Breitbart,M.
TITLE Novel circular single-stranded DNA viruses identified in marine
invertebrates reveal high sequence diversity and consistent
predicted intrinsic disorder patterns within putative structural
proteins
JOURNAL Front Microbiol 6, 696 (2015)
PUBMED 26217327
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1895)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-AUG-2015) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1895)
AUTHORS Schenck,R.O., Harbeitner,R.C., Lawler,S.N., Rosario,K. and
Breitbart,M.
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2015) College of Marine Science, University of
South Florida, 140 7th Avenue South, St. Petersburg, FL 33701, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KR528560.
##Assembly-Data-START##
Assembly Method :: Sequencher v. 4.1.4
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1895
/organism="Palaemonetes kadiakensis Mississippi grass
shrimp associated circular virus"
/mol_type="genomic DNA"
/isolate="I0099"
/host="Palaemonetes kadiakensis"
/db_xref="taxon:1692258"
gene complement(join(1042..1895,1..129))
/locus_tag="AMR04_gp1"
/db_xref="GeneID:25479224"
CDS complement(join(1042..1838,9..129))
/locus_tag="AMR04_gp1"
/codon_start=1
/product="putative spliced replication initiation protein"
/protein_id="YP_009163920.1"
/db_xref="GeneID:25479224"
/translation="MREKERNNTAAPHEPVSRDPGSIRRTKSIKRDAVSLSRRVARWW
LLTIPEDDWNPPADLPAGVAHLKGQLESGAEGGYRHWQVMVSFTTQVRLPAVKALFSR
TAHCEPSRSDAVDKYVWKEDTRVPGTQFELGRAPVKLNSKPDWDAIWDAAKAGNIEAI
PAGIRVRSYANLRRIRSDHAVALPVERSCRVFVGPTGTGKSHRAWSEAGMDAYPKDPR
TKFWDGYRDQLHVVIDEFRGGIDIAHLLRWLDRYPVNVEIKGASMPLAAKGIWITSNL
APNLWYPAPQHTATLYHPGIRYWSKCCAE"
misc_feature complement(join(1624..1838,9))
/locus_tag="AMR04_gp1"
/note="Putative viral replication protein; Region:
Viral_Rep; pfam02407"
/db_xref="CDD:280553"
misc_feature complement(1132..1389)
/locus_tag="AMR04_gp1"
/note="RNA helicase; Region: RNA_helicase; pfam00910"
/db_xref="CDD:425942"
gene 153..1145
/locus_tag="AMR04_gp2"
/db_xref="GeneID:25479223"
CDS 153..1145
/locus_tag="AMR04_gp2"
/codon_start=1
/product="putative capsid protein"
/protein_id="YP_009163921.1"
/db_xref="GeneID:25479223"
/translation="MPGTLVRRRSRSVGWARRAGAAVSVARGVWRGVKRVRSAISRGR
SLARSTSRTRSKSRPKSSTRPSSAAPMSVDPQSISHGSVSLRLASPVKGMKSLGRWVY
TQQNNGRIVAGLGLQGAGVLLGHNTISQLVVDTAVPNGTQFKDDVFAMNPYQANTGSG
IFGSILAPSQDRIMCRSVRTKFMMANTSNAPCVVVLYWVLSKKAHQGNPFDRWTSFLS
ETALGQSTATQPNQSDSSTGPGTTGVPTFAVYGQEPTTVRSWRNTFKLLRRKEYHMSF
GAVQCINYSVAVNKMFDKTVATQHNTLTSTGYPGGTVWLCAVVRGTRDLVPDCW"
ORIGIN
1 gttacttact acacgacgag acagcgagac agcgtctcgc tttatacttt tagtgcggcg
61 aatagagccc ggatcacgcg acacgggctc atgtggcgca gcagtgttgt tccgctcttt
121 ctctctcatc gcgacatcag ctgacctatc acatgccagg gaccctagtc agacgacgta
181 gccgcagtgt aggatgggcc aggcgtgcag gcgctgcagt gagtgttgcc cggggtgtct
241 ggaggggggt gaagagagtg cgcagtgcta tcagtcgggg ccgcagtcta gctcgcagta
301 ccagccgtac ccgcagcaag agccgcccca agtcttccac ccgaccctcg agcgccgccc
361 ccatgtccgt cgaccctcag agcatctccc acggctcagt cagtctccgt ctagcttccc
421 cagtcaaggg catgaagagc ctcggccgct gggtgtatac tcagcaaaat aatggtcgta
481 ttgtagccgg actcggtctt cagggtgccg gtgtcctctt gggccataat actattagtc
541 agctggttgt tgatacagct gtgcccaacg gcactcagtt caaggatgat gtgtttgcaa
601 tgaaccctta tcaggccaat acgggtagcg gtatctttgg gtctattctc gctcctagtc
661 aggaccgtat catgtgtcgc tcggttcgga ccaagttcat gatggccaac accagcaacg
721 ccccctgtgt tgttgttctc tattgggtgc ttagcaagaa ggcgcaccag ggtaatccgt
781 ttgaccggtg gacctcattt ctctctgaga ccgcgctggg tcagagcacc gccacccagc
841 caaatcagag tgattcatcg accggccccg gcacaactgg cgtgccgact tttgccgtgt
901 acggtcagga gccaaccacc gttcggtcgt ggcgaaatac gttcaagtta ctccgccgga
961 aggagtatca catgtccttt ggtgctgtgc agtgtatcaa ttattccgta gcggtcaata
1021 agatgtttga taagaccgtt gctactcagc acaacacttt gaccagtacc ggatacccgg
1081 gtggtacagt gtggctgtgt gctgtggtgc ggggtaccag agatttggtg ccagattgct
1141 ggtgatccaa atcccttttg ccgctagtgg catagaggct cccttgattt ccacgttgac
1201 cgggtaacga tcgagccagc ggagcagatg cgcgatgtcg atacctcctc gaaattcatc
1261 aatgacaacg tgaagctgat cccggtaacc gtcccaaaac ttggttcgag ggtccttagg
1321 ataagcgtcc ataccggctt ctgaccaggc tcgatgagac tttccagttc cagtcggtcc
1381 cacaaacacc cggcatgagc gttcgaccgg aagtgccaca gcatgatctg agcggatgcg
1441 gcgcaggttt gcgtaacttc gtactcgtat accagcagga atggcttcga tgttgcccgc
1501 cttggcggcg tcccatattg cgtcccagtc gggcttggag ttgagcttga caggagctcg
1561 tcccagctcg aactgtgttc caggaactcg ggtgtcctcc ttccagacgt acttgtccac
1621 agcgtctgag cggcttggtt cgcagtgggc tgttcttgag aatagggcct tgacggccgg
1681 tagtcggacc tgagtggtga aggagaccat gacctgccaa tgtcggtatc ctccttcggc
1741 tccggactcg agctggccct tgaggtgagc gacgccggct ggaaggtcag cgggggggtt
1801 ccagtcatcc tcggggatag tgagcagcca ccagcgagcc ttgggtgagg gtggcagtgt
1861 cgaagggccg cgtgaccggc ctgtctcgtc gtagt
//
