LOCUS NC_028396 3040 bp RNA linear VRL 13-AUG-2018
DEFINITION Shuangao insect virus 7 strain SKC segment 1, complete sequence.
ACCESSION NC_028396
VERSION NC_028396.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Shuangao insect virus 7
ORGANISM Shuangao insect virus 7
Viruses; Riboviria.
REFERENCE 1 (bases 1 to 3040)
AUTHORS Shi,M., Lin,X.D., Vasilakis,N., Tian,J.H., Li,C.X., Chen,L.J.,
Eastwood,G., Diao,X.N., Chen,M.H., Chen,X., Qin,X.C., Widen,S.G.,
Wood,T.G., Tesh,R.B., Xu,J., Holmes,E.C. and Zhang,Y.Z.
TITLE Divergent viruses discovered in arthropods and vertebrates revise
the evolutionary history of the Flaviviridae and related viruses
JOURNAL J. Virol. (2015) In press
PUBMED 26491167
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 3040)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-NOV-2015) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3040)
AUTHORS Shi,M., Lin,X.-D., Vasilakis,N., Tian,J.-H., Li,C.-X., Chen,L.-J.,
Eastwood,G., Diao,X.-N., Chen,M.-H., Chen,X., Qin,X.-C.,
Widen,S.G., Wood,T.G., Tesh,R.B., Xu,J., Holmes,E.C. and
Zhang,Y.-Z.
TITLE Direct Submission
JOURNAL Submitted (15-MAY-2015) Department of Zoonosis, State Key
Laboratory for Infectious Disease Prevention and Control, National
Institute of Communicable Disease Control and Prevention, Chinese
Center for Disease Control and Prevention, Changping Liuzi 5,
Beijing, Beijing 102206, China
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KR902717.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3040
/organism="Shuangao insect virus 7"
/mol_type="genomic RNA"
/strain="SKC"
/host="Chrysopidae sp."
/db_xref="taxon:1746063"
/segment="1"
/country="China"
/collection_date="2013"
/note="identical sequence found in hosts Psychoda
alternata and Diptera sp."
gene 83..2800
/locus_tag="AS153_s1gp1"
/db_xref="GeneID:26217618"
CDS 83..2800
/locus_tag="AS153_s1gp1"
/codon_start=1
/product="NS5-like protein"
/protein_id="YP_009179401.1"
/db_xref="GeneID:26217618"
/translation="MIIYIILVGIVGIILEILDRRGANRESPLEVLLRLSDIFAKPDV
TRWGGEYKEALRGLGARAFNAFKNRGVRRVDKDPHVASRGYDKLLEISIAARVKPRGA
VLSLCCGRGGWEQLYAASPDVTRITAVTLGKGPGHEGHEDFTDNYFPGREKVCLRFAD
ATSYPITAHDTLLFDGGESHPDFSVEANRFNQLFAGAVMRQITPNTKTFILKILTPTS
PETIRMMQAIQTMTGRGSLYRASVSRNSTLELYFVSTAPTNIRNQIRELMQDMARRGI
ENRKLEARRAGPQYLYAREEIQETCVPLLATPDMSDSIAGLGEPLPEVGRAYNHWESL
GVYPMGVSGSKGMKYNKYGMACATRMLSSIDGFDQWKLTDTTPEGFVSVFNTKIDKPP
TENHPYEKRLWAVYKGMSSHFQARGFRLRELSYDEIEKQVNNAGAPGYADMMEGVNDI
KDYMSRPDWRKKVEKLRQALLSGRPKEAIFNTMGKREKKKSGGKGSRMIAYMSIGMRL
LEMKLFGNLMKLTKPEYMHFGVGGFGLHDLGERLRRVWKGEGSSDDIAGFDTRVSAKT
LAFEAAFVQELGGNTGHREMYEVYASPHILIPVPSPHRRVQLLVGRGQRMSGCQVTYP
MNTLTRVALFLVQASLAEGVDENLVQAWVMRVMRGKEDIGGAVSGDDAVFTSSKKMKE
IINHSDVLEDMGFPRKNMARGVRSPLMHDVREVEFCSHRYEPVTFMDTHTGKIVTKYM
PTRDFGEIAAKSLIRTGGDVSDLDALAWISAQGNNLLVNYPHLRSARALGFAFKSVAP
PNLVPDNKGGFMRPRPWMQPGDILTVFNDVHFGNSSKYPIPGFEVRAWRNVGYLKPKI
ETLYDPPSFTRRRSIWRDNLHRDVTKAIYDFGTGGNLIPLDLWRERRLD"
misc_feature 221..895
/locus_tag="AS153_s1gp1"
/note="Cap-0 specific (nucleoside-2'-O-)-methyltransferase
of flaviviridae; Region: capping_2-OMTase_Flaviviridae;
cd20761"
/db_xref="CDD:394920"
misc_feature order(236..238,245..250,254..256,617..622,818..820)
/locus_tag="AS153_s1gp1"
/note="nucleic acid substrate binding site [nucleotide
binding]; other site"
/db_xref="CDD:394920"
misc_feature order(401..409,416..421,470..475,560..565,605..610)
/locus_tag="AS153_s1gp1"
/note="SAM binding site [chemical binding]; other site"
/db_xref="CDD:394920"
misc_feature order(605..607,716..718,827..829)
/locus_tag="AS153_s1gp1"
/note="active site"
/db_xref="CDD:394920"
misc_feature 1157..2728
/locus_tag="AS153_s1gp1"
/note="conserved catalytic core domain of RNA-dependent
RNA polymerase (RdRp) from the positive-sense
single-stranded RNA [(+)ssRNA] viruses and closely related
viruses; Region: ps-ssRNAv_RdRp-like; cl40470"
/db_xref="CDD:454764"
misc_feature order(1736..1738,1739..1771)
/locus_tag="AS153_s1gp1"
/note="conserved polymerase motif A; other site"
/db_xref="CDD:438017"
misc_feature order(1925..1975,1979..1996)
/locus_tag="AS153_s1gp1"
/note="conserved polymerase motif B; other site"
/db_xref="CDD:438017"
ORIGIN
1 ggtgacttag gagggaacca aaaacaaata ctgattggga accaatttta agtttgcagc
61 atcaataaac aattacaaca ggatgataat ttatatcatc cttgttggga tagtaggaat
121 aatactagag attcttgata ggcgaggagc caatcgggaa tcaccattag aagtgttgct
181 cagattgagc gacattttcg ccaaaccgga cgtgaccaga tggggaggag agtataagga
241 agctctccgt ggacttggag ccagagcgtt taatgccttt aagaataggg gcgttagacg
301 cgtggataag gatcctcatg tagccagtag aggatacgat aagctgcttg agataagcat
361 agccgccagg gtaaaaccga ggggcgcagt gttgtcgctg tgctgtggta gaggcggatg
421 ggagcagttg tatgcggcct cacctgatgt gacacgaata acagctgtca cactgggtaa
481 gggaccaggg catgagggtc atgaagattt cactgacaat tactttcccg gcagagagaa
541 ggtttgtttg aggtttgcgg atgcaacatc atacccaatt acagcccatg acacccttct
601 ttttgatggt ggtgagagcc acccggattt tagtgtggag gccaataggt ttaaccagct
661 ttttgccggg gctgtcatga gacaaataac acccaacacg aaaacattca ttctcaaaat
721 attgacacca acatccccag aaactattag aatgatgcag gccatccaga ccatgacagg
781 tagggggagc ttgtataggg ctagtgtttc aaggaattcc actctggagc tgtatttcgt
841 aagcacagct cctaccaata ttcgcaatca gattagggag ctgatgcagg atatggcaag
901 gagaggcata gagaatcgga agttggaggc taggagggcc ggtccacagt acttgtatgc
961 acgtgaagag atacaggaaa cgtgcgtacc actattagcg acaccagata tgagtgattc
1021 tattgctggg cttggagagc cattaccaga agttggacgg gcttacaatc actgggagag
1081 tttgggagtt taccccatgg gtgtgtcagg cagcaagggc atgaaataca acaagtacgg
1141 aatggcgtgc gcaaccagga tgctgtcgtc cattgatgga tttgatcaat ggaagttgac
1201 agatacaaca ccagaggggt ttgtctctgt gttcaatacc aagatagaca aaccaccaac
1261 agaaaaccat ccatatgaaa aacggttgtg ggcggtctat aaaggcatgt ctagccactt
1321 ccaggcaagg gggttcaggc tgagagaact cagctacgat gagatagaga aacaagtgaa
1381 taatgctggc gctcctggat atgctgacat gatggaagga gtgaatgaca tcaaagatta
1441 catgtcaagg cccgactgga gaaagaaggt cgagaaattg aggcaagccc tactgagtgg
1501 cagaccaaag gaagccatat tcaacaccat gggtaagaga gagaaaaaga aaagtggtgg
1561 aaagggatcc cgcatgatag cctatatgag tatcggtatg agattacttg agatgaagct
1621 ctttgggaat ttgatgaagc tcacaaaacc agaatacatg cattttggag tgggaggctt
1681 tggactacac gacctaggag aaaggttgag aagagtgtgg aaaggagaag gctcatctga
1741 tgatatagct ggatttgaca caagggtatc ggccaagaca ttagccttcg aagctgcctt
1801 tgtgcaggaa ctgggaggta acactggcca tagagagatg tatgaggtgt atgcctcacc
1861 acatatcttg ataccagtac catcaccaca taggagagta cagctcctgg ttggacgagg
1921 gcagagaatg agcgggtgcc aagtcactta cccgatgaac acattgacca gggtagcact
1981 attcttggtc caggcatcat tagccgaggg agtggatgag aatttggttc aagcttgggt
2041 catgagagtg atgaggggga aggaagatat tggtggagct gtgtcaggag atgatgcagt
2101 ctttaccagc tccaagaaga tgaaggaaat aataaatcat agtgatgtcc ttgaggatat
2161 gggatttccc aggaagaaca tggctagggg ggttagatcc ccccttatgc acgacgtccg
2221 agaggtagaa ttctgttcac accggtatga gccagttact ttcatggaca cccacacagg
2281 taagatagtg acgaaatata tgccgaccag agactttgga gaaatagctg ccaagtcctt
2341 gataaggact ggtggtgacg tgtcggacct ggatgctttg gcttggatct ctgcgcaggg
2401 taataacttg ttagttaatt atccgcattt gagatcggct agagcactgg ggttcgcatt
2461 caagtctgtg gcaccaccga atttagtacc agacaacaag ggtggattta tgagacctag
2521 accgtggatg cagccgggag atatactgac tgtgttcaac gatgtgcatt ttggcaatag
2581 ttcaaaatac ccaataccgg gatttgaagt gagagcctgg cgcaacgtgg gatacctgaa
2641 acccaagata gagacactgt atgatccgcc tagtttcact aggcgtcgat caatttggag
2701 agacaattta caccgggacg tgaccaaggc catatatgat tttggaacag ggggaaacct
2761 aatccccctg gacctatggc gagaacggag attagattaa tttagtatta tagtagtatg
2821 ttgataggga gtagaggttt cgcagaccct taagtgccta agcaacatac aattagttaa
2881 ggttagataa gttaatactt ggtttgctga gatcaagtag agatttaatc agcatcagtg
2941 tgggccctaa tacacactga ttacataacc gcgactactt tgcgactgga gagccgctta
3001 ctggccaacc tactatccat agcaatttag aaacagggcc
//
