LOCUS NC_030139 2136 bp DNA circular VRL 13-AUG-2018
DEFINITION Sewage associated gemycircularvirus 3 isolate 27_BS14149_chicken,
complete sequence.
ACCESSION NC_030139
VERSION NC_030139.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Sewage associated gemycircularvirus 3
ORGANISM Sewage associated gemycircularvirus 3
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus;
Gemykibivirus sewopo1.
REFERENCE 1 (bases 1 to 2136)
AUTHORS Steel,O., Kraberger,S., Sikorski,A., Young,L.M., Catchpole,R.J.,
Stevens,A.J., Ladley,J.J., Coray,D.S., Stainton,D., Dayaram,A.,
Julian,L., van Bysterveldt,K. and Varsani,A.
TITLE Circular replication-associated protein encoding DNA viruses
identified in the faecal matter of various animals in New Zealand
JOURNAL Infect. Genet. Evol. 43, 151-164 (2016)
PUBMED 27211884
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 2136)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2016) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2136)
AUTHORS Steel,O., Kraberger,S., Sikorski,A. and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2015) School of Biological Sciences, University
of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KT862240.
##Assembly-Data-START##
Assembly Method :: DNAbaser v. 4
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2136
/organism="Sewage associated gemycircularvirus 3"
/mol_type="genomic DNA"
/isolate="27_BS14149_chicken"
/isolation_source="feces"
/host="Gallus gallus momesticus"
/db_xref="taxon:1843761"
/country="New Zealand"
/collection_date="2012"
gene 109..1026
/locus_tag="A8B40_gp1"
/db_xref="GeneID:27815471"
CDS 109..1026
/locus_tag="A8B40_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_009252346.1"
/db_xref="GeneID:27815471"
/translation="MVYRRLSRRKSAYRPRSAKSRYGRKRTRSTRVRVSRRMRPMSTR
SLLNRTSQKKRDNMLSYTNTTAADPFSTVYSATGAVMRFPVGQINPGEEFFYVWNATA
RPGETSEGQRGSKIDTSLRTSSTIYAKGLREKITVETNNSAPWEWRRICFTSKDDFGE
RDPASSTFFRQTSSGMVRMLSALSTGIYLQDELFEGARNVDWLSVFTAPLSRKNFSIK
YDRTRTIRSTNNSGTIRNYKLWHPMEHNLAYQEEQVGESMTDQSVSVTGRVGMGNYYV
IDMFRKHGNNDNDSTLTFTPEATFFWHEK"
gene complement(982..2114)
/locus_tag="A8B40_gp2"
/db_xref="GeneID:27815469"
CDS complement(join(982..1385,1523..2114))
/locus_tag="A8B40_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_009252347.1"
/db_xref="GeneID:27815469"
/translation="MTFRFAAKYGLLTYAQIGDRDVEEFGWRVSDMLGSLGAECIVGR
ESHADGGLHIHAFFMFERKFQSRNVRVFDMDGCHPNIVRGYSTPEDGARYAIKEGDVI
AGGLDVDSLGSSVAGSKTVWAQIILAESRDDFFAACAELAPRALLCSFTSLRCYADWK
YREDPAPYRHPEDVSFDTSRFPELDRWVQDSLRGAQRGRRRSLILYGPTKLGKTLWAR
SLGNHAYFGGLFSMDESIDDVDYAVFDDMQGGLKFFHSYKFWLGAQSQFYVTEKYKGK
RLVHWGKPCIYLYNHNPLCDEGADHDWLLGNCDIVGLDADDSLLVPEEGSLGGER"
misc_feature complement(1800..2108)
/locus_tag="A8B40_gp2"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(join(1330..1385,1523..1751))
/locus_tag="A8B40_gp2"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
gene complement(1389..2114)
/locus_tag="A8B40_gp3"
/db_xref="GeneID:27815470"
CDS complement(1389..2114)
/locus_tag="A8B40_gp3"
/codon_start=1
/product="RepA"
/protein_id="YP_009252348.1"
/db_xref="GeneID:27815470"
/translation="MTFRFAAKYGLLTYAQIGDRDVEEFGWRVSDMLGSLGAECIVGR
ESHADGGLHIHAFFMFERKFQSRNVRVFDMDGCHPNIVRGYSTPEDGARYAIKEGDVI
AGGLDVDSLGSSVAGSKTVWAQIILAESRDDFFAACAELAPRALLCSFTSLRCYADWK
YREDPAPYRHPEDVSFDTSRFPELDRWVQDSLRGAQRGKRCSLRSGSDVDSGFLPIHG
SVPLGPIRLRRSDHSRMLRNANL"
misc_feature complement(1800..2108)
/locus_tag="A8B40_gp3"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
ORIGIN
1 taatgttatt ctacctttca gatggtgtca gtgtcagcta tttatctata aaaagcccac
61 gccccaacac tcagctgccc ctaaattaaa tgcctcaaaa tccctcacat ggtctaccgg
121 cgcctatcaa gacgcaagtc tgcatatcga ccccgcagtg ccaagtcccg ctatggacgc
181 aagcggacaa gatccactcg ggtacgcgtg tcccgaagga tgcgacctat gtccacccgg
241 agtctcctca accggaccag tcagaagaag cgagacaaca tgttgtccta cactaataca
301 accgccgccg atcctttctc caccgtgtac tctgcaacgg gagcagtcat gcgatttcca
361 gtgggacaga ttaatccagg agaagaattt ttctacgtat ggaatgcaac cgcccgacca
421 ggagagacct ccgaaggcca acgaggatcg aagatcgaca cgtcactgcg cacctcctca
481 acaatttacg ccaagggatt acgcgagaaa atcactgtgg agacaaacaa ctccgccccc
541 tgggaatggc gccgcatatg ctttacctca aaggatgatt ttggggaacg tgatccagcc
601 tcctccacct tctttcgtca gacgtccagc ggtatggtgc gaatgctgtc cgcattgtca
661 accggaatat acctacagga cgaactattc gagggtgccc ggaatgttga ttggctgtca
721 gtgttcacag cccccttatc acggaagaat ttctccatca agtatgatcg aacccgtacc
781 attcgatcaa caaacaattc cggaacaatc cgaaactaca agttgtggca ccccatggaa
841 cataacctag cctatcaaga agagcaagtc ggtgagagta tgactgatca gtcagtttca
901 gtcacgggtc gagtaggaat gggcaactat tacgtcattg atatgttccg taaacacggg
961 aataacgata atgactccac cctaacgttc acccccgagg ctaccttctt ctggcacgag
1021 aagtgagtca tctgcgtcca gacccactat atcgcaattt cccagcaacc agtcatgatc
1081 cgcaccctcg tcacatagag ggttgtggtt gtacagatag atacagggct tgccccaatg
1141 aaccagtcgt ttccccttat acttttccgt tacgtaaaat tgtgattgtg cacccaacca
1201 aaatttgtaa ctgtgaaaaa acttaagtcc accctgcata tcgtcgaaaa cggcatagtc
1261 gacgtcatcg atggactcat ccatagaaaa caggccccca aagtaagcgt ggttgcctaa
1321 acttcgcgcc cacagtgttt tgcctagttt tgtgggtcca tacaagatga ggcttcttct
1381 tcggcctatt acaagttagc attacgtaac atcctggagt ggtccgagcg ccggaggcgg
1441 atcggaccta acggaaccga gccatgaatt ggcaaaaacc ccgagtcaac atcagaaccc
1501 gagcggagcg agcagcgctt acctctttga gcccctctaa gagaatcttg cacccatcga
1561 tcgagctcag gaaatcttga cgtgtcaaat gatacatcct ctgggtgtcg ataaggagct
1621 gggtcctctc tgtacttcca atcggcataa catcggagtg aggtgaatga acacagaagt
1681 gcccttggtg ccagttccgc acatgccgca aaaaagtcgt ctcgagactc cgccaggatg
1741 atttgagccc agacagtttt agatccagcc actgagcttc caagagagtc cacgtcgagt
1801 cctccagcaa taacgtcacc ctccttgatc gcgtagcgtg ctccatcttc aggagtgctg
1861 tagccacgga cgatatttgg atggcatcca tccatatcaa acacacggac atttcgtgat
1921 tggaacttcc gttcgaacat gaagaaagca tggatatgca gtcctccatc agcgtgagac
1981 tctcggccca cgatacactc cgctccaagc gatccaagca tgtcgctaac tctccacccg
2041 aactcctcca cgtctcggtc tccgatttgg gcatacgtga gtaatccata tttggcagcg
2101 aagcgaaaag tcatgtgaca gacactgaaa ggtaga
//
