LOCUS NC_030140 2230 bp DNA circular VRL 13-AUG-2018
DEFINITION Faeces associated gemycircularvirus 17 isolate 27_Fec16497_chicken,
complete sequence.
ACCESSION NC_030140
VERSION NC_030140.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Faeces associated gemycircularvirus 17
ORGANISM Faeces associated gemycircularvirus 17
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus;
Gemycircularvirus chicas2.
REFERENCE 1 (bases 1 to 2230)
AUTHORS Steel,O., Kraberger,S., Sikorski,A., Young,L.M., Catchpole,R.J.,
Stevens,A.J., Ladley,J.J., Coray,D.S., Stainton,D., Dayaram,A.,
Julian,L., van Bysterveldt,K. and Varsani,A.
TITLE Circular replication-associated protein encoding DNA viruses
identified in the faecal matter of various animals in New Zealand
JOURNAL Infect. Genet. Evol. 43, 151-164 (2016)
PUBMED 27211884
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 2230)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2016) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2230)
AUTHORS Steel,O., Kraberger,S., Sikorski,A. and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2015) School of Biological Sciences, University
of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KT862242.
##Assembly-Data-START##
Assembly Method :: DNAbaser v. 4
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2230
/organism="Faeces associated gemycircularvirus 17"
/mol_type="genomic DNA"
/isolate="27_Fec16497_chicken"
/isolation_source="feces"
/host="Gallus gallus momesticus"
/db_xref="taxon:1843737"
/country="New Zealand"
/collection_date="2012"
gene 82..1071
/locus_tag="A8B55_gp1"
/db_xref="GeneID:27815476"
CDS 82..1071
/locus_tag="A8B55_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_009252349.1"
/db_xref="GeneID:27815476"
/translation="MPYQRRSYSSRARRPTYRTARPARYTRNSYSRRPTSRRTPIRRT
YRRRSTEKMPRYRRSYRRRRPMTRKKILNLTSVKKQDNMQLSSNVTAATPQGSATYTN
SAAVLPATQLYIFPWIATARDLDRDTGNIRGAPSDSATRTAQTCYMVGLRENIEITTN
DGLPWQWRRICFTFKGSEFTATSTTGLNYYLQTSNGMTRTVNTAYGSTAVGVLQSLLF
KGAAGVDWSNTITAPTDNTTISVKYDRTISIASGNEQGTIRRYRRFHPMGHNIIYADD
EQGGTESESFVSSRGKPGMGDYYVIDIFQPRFGGTSASQLRFEPSATLYWHEK"
gene complement(1046..2189)
/locus_tag="A8B55_gp2"
/db_xref="GeneID:27815474"
CDS complement(join(1046..1479,1616..2189))
/locus_tag="A8B55_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_009252350.1"
/db_xref="GeneID:27815474"
/translation="MPATSLLHTRSAVLLMSGPLTTILDLLERSVSWDEKFMLMEVLI
SMFSAISAESFDPDEPISLMCRVITQTSSDLKETLERVRVTQQKMETLSPVGSPWNPC
PLRSFQALKIRGLRSSAAKVERNFMRLLTTSVRGISSPDLEAFTHTPSGSGLRSAWAT
NVPPGSCLAMELFLTWLATEREFWMYEVSGSFGRVKTLVIYGPPLTGKTTWAQSLGNH
VYMKKTFNAKEASLCESKDYCVIDDISGGIKFFPHWKDWFGGQPYVQIRLLYRDELLL
RWGKPTIWLNNRDPRDQLRDMVGRDYSDEQYQNDVEWMDANCIFVYVDSPIVTFHANT
E"
misc_feature complement(<1286..>1468)
/locus_tag="A8B55_gp2"
/note="CRISPR/Cas system-associated protein Cas3; Region:
Cas3_I; cl41983"
/db_xref="CDD:455328"
gene complement(1431..2189)
/locus_tag="A8B55_gp3"
/db_xref="GeneID:27815475"
CDS complement(1431..2189)
/locus_tag="A8B55_gp3"
/codon_start=1
/product="RepA"
/protein_id="YP_009252351.1"
/db_xref="GeneID:27815475"
/translation="MPATSLLHTRSAVLLMSGPLTTILDLLERSVSWDEKFMLMEVLI
SMFSAISAESFDPDEPISLMCRVITQTSSDLKETLERVRVTQQKMETLSPVGSPWNPC
PLRSFQALKIRGLRSSAAKVERNFMRLLTTSVRGISSPDLEAFTHTPSGSGLRSAWAT
NVPPGSCLAMELFLTWLATEREFWMYEVSGSCASTLCAHGPSPPGASSPGGGPRASLE
SRARWNRSILGVLALTLISWKSENPGHLRSSFDR"
ORIGIN
1 taatattatc agacaggaca caggacacag gacacactat aaatacctgg tggggccccc
61 ctttgcccgc caaaatgtcc aatgccgtac caacgtcgat cgtactcgtc acgggcaaga
121 aggccaacct atcgtaccgc acggcccgct cgctatacca ggaacagcta cagtcggcga
181 ccaacatccc gacggacgcc gataaggaga acgtaccgcc gacgctcaac cgagaagatg
241 ccacgctatc gacggagcta tcgaaggagg cgtcccatga ccaggaagaa gatcctcaat
301 ctcacctcgg tgaaaaagca ggataacatg cagctctcct ccaatgtgac tgccgcaacc
361 ccccaaggta gcgccaccta caccaactct gctgccgtgt tacccgccac acaactctat
421 attttcccct ggattgcgac cgcccgtgat ctagaccgcg acaccggaaa tatccggggt
481 gccccttccg acagtgccac tcgcaccgcc caaacttgtt atatggtcgg cctccgagag
541 aacattgaga ttaccaccaa tgatggtctt ccctggcagt ggaggcgtat ttgcttcact
601 ttcaaagggt cggagtttac cgccaccagt actactgggc tcaactacta tttgcagact
661 agtaacggta tgactcgcac cgtcaatact gcttacggtt ctaccgctgt tggagtgctg
721 caaagcttgc ttttcaaggg cgcagcgggt gttgattggt caaacactat aaccgccccc
781 accgacaaca ccactatctc cgttaaatac gacaggacga tctcgatcgc ctccgggaat
841 gagcaaggaa caatccggcg ttaccgccga tttcacccca tgggccacaa cataatctat
901 gcggatgacg aacagggcgg cacggagagc gagtcattcg tatcatcgag gggtaaacca
961 ggtatgggag attattacgt catagatatt ttccagccac gttttggtgg tacttccgct
1021 tctcagctca gatttgagcc atcagctact ctgtattggc atgaaaagta acgatggggc
1081 tatctacata gacaaaaatg caatttgcgt ccatccattc cacatcgttt tgatactgct
1141 catccgaata atctcgcccc accatgtccc gtaactggtc tcggggatcc ctgttgttca
1201 accaaattgt gggcttgccc cacctcaaca aaagttcgtc ccgatataac agcctaatct
1261 gcacatacgg ctgacccccg aaccaatcct tccaatgagg aaaaaacttt attccgccac
1321 tgatgtcatc gatgacacaa tagtcctttg actcacacag ggacgcctcc ttcgcattga
1381 atgtcttttt catgtagaca tggttgccta gtgattgcgc ccacgtggtc ttaccggtca
1441 aaggaggacc gtagatgacc agggttttca ctcttccaac taataagagt tagcgccaag
1501 accccaagta tagatctatt ccagcgtgct cgagactcta gcgacgcacg tggcccccct
1561 ccgggggacg acgccccagg cggcgagggg ccgtgcgcgc aaagagtcga cgcacaagat
1621 ccacttacct cgtacatcca gaattccctc tcggtagcta accaggtcag gaaaagctcc
1681 atcgctaagc acgagcccgg cgggacgttc gtagcccatg ccgacctcag gccacttcca
1741 cttggcgtat gcgtgaaagc ttccaaatcg ggtgatgaga tcccacggac agatgtcgtc
1801 agcaacctca taaaattccg ctcgactttc gcagcagacg agcgtagacc ccggatcttg
1861 agggcctgaa acgatcttag tgggcaggga ttccacggcg agcccaccgg cgacaatgtc
1921 tccatctttt gctgcgtaac tcgcaccctt tcgagggttt cttttagatc gctcgatgtt
1981 tgggtgatga ccctgcacat caaagatatc ggctcgtcgg gatcgaaact ttctgccgaa
2041 atcgcagaaa acatggagat gagtacctcc atcagcatga atttctcgtc ccacgagaca
2101 ctccgctcca agagatccaa aatggtcgtt aacggcccac tcatcaagag taccgcactg
2161 cgggtatgta acaaggaagt agcgggcatt gagaataaaa gtcatgtgac gaagtgtgtc
2221 ctgtcgaaac
//
