LOCUS NC_030141 2247 bp DNA circular VRL 13-AUG-2018
DEFINITION Faeces associated gemycircularvirus 20 isolate 27_Fec79971_chicken,
complete sequence.
ACCESSION NC_030141
VERSION NC_030141.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Faeces associated gemycircularvirus 20
ORGANISM Faeces associated gemycircularvirus 20
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus;
Gemycircularvirus chicas1.
REFERENCE 1 (bases 1 to 2247)
AUTHORS Steel,O., Kraberger,S., Sikorski,A., Young,L.M., Catchpole,R.J.,
Stevens,A.J., Ladley,J.J., Coray,D.S., Stainton,D., Dayaram,A.,
Julian,L., van Bysterveldt,K. and Varsani,A.
TITLE Circular replication-associated protein encoding DNA viruses
identified in the faecal matter of various animals in New Zealand
JOURNAL Infect. Genet. Evol. 43, 151-164 (2016)
PUBMED 27211884
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 2247)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2016) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2247)
AUTHORS Steel,O., Kraberger,S., Sikorski,A. and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2015) School of Biological Sciences, University
of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KT862243.
##Assembly-Data-START##
Assembly Method :: DNAbaser v. 4
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2247
/organism="Faeces associated gemycircularvirus 20"
/mol_type="genomic DNA"
/isolate="27_Fec79971_chicken"
/isolation_source="feces"
/host="Gallus gallus momesticus"
/db_xref="taxon:1843740"
/country="New Zealand"
/collection_date="2012"
gene 191..1114
/locus_tag="A8B52_gp1"
/db_xref="GeneID:27815481"
CDS 191..1114
/locus_tag="A8B52_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_009252352.1"
/db_xref="GeneID:27815481"
/translation="MPARYPTARRRVVRRRRPVRRRRYPVRRRRVFRRRSTRTTISRR
AILNVASSKKKDNMVAFRQTGSDSEPTQGPLTITGNPTLSAFGEHIVMWLPTARNRGT
VPEETERNSQTCFMRGLSERINISTDTSLPWTWRRICFTLKGLGVIRRDGTAINVLSF
EEAAPNGYVRLARNYSSVGGDPNWEAIAEQLISLIMDGTRGIDFLDLTTAKTDGTNVT
IKYDRTFRLASGNDSGIQKVYKLWHPMNKNLVYDDDEDGGDMVGNSISTQGKPGMGDY
YVVDIFKAHPAATSSDHLLFDPMATLYWHEK"
gene complement(1089..2219)
/locus_tag="A8B52_gp2"
/db_xref="GeneID:27815479"
CDS complement(join(1089..1477,1625..2219))
/locus_tag="A8B52_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_009252353.1"
/db_xref="GeneID:27815479"
/translation="MSAFQVNSRYVLLTYAQCGDLDPWAVNDLLSTLGAECIIGRERH
EDGGIHLHAFVDFNRKFRTRRSDIFDVDGHHPNISQSRGTPEKGYDYAIKDGDVVAGG
LGRPEGKSGGGDGSTHAKWTAITQAENREQFWELCHELDPKAAATSFTQLSKYADWRF
APDPPVYEHPIGISFTDGDLDGRREWLDQAGIGGGERRGRCKSLCLFGRSRTGKTLWA
RSLGQHIYCVGLVSGDECMKAPDVDYAIFDDIRGGMKFFPSFKEWLGAQAWVTVKRLY
REPALVQWGKPSIWLANSDPRNDMSQDDVQWMEDNCIFVECNETIFRANIE"
misc_feature complement(1914..2210)
/locus_tag="A8B52_gp2"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(join(1422..1477,1625..1862))
/locus_tag="A8B52_gp2"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
gene complement(1617..2219)
/locus_tag="A8B52_gp3"
/db_xref="GeneID:27815480"
CDS complement(1617..2219)
/locus_tag="A8B52_gp3"
/codon_start=1
/product="RepA"
/protein_id="YP_009252354.1"
/db_xref="GeneID:27815480"
/translation="MSAFQVNSRYVLLTYAQCGDLDPWAVNDLLSTLGAECIIGRERH
EDGGIHLHAFVDFNRKFRTRRSDIFDVDGHHPNISQSRGTPEKGYDYAIKDGDVVAGG
LGRPEGKSGGGDGSTHAKWTAITQAENREQFWELCHELDPKAAATSFTQLSKYADWRF
APDPPVYEHPIGISFTDGDLDGRREWLDQAGIGGGERRGK"
misc_feature complement(1914..2210)
/locus_tag="A8B52_gp3"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
ORIGIN
1 taatattata gcccaggaca cagggcacac cccaactata aatacctgtg tccccccccc
61 ctgctcgtat gagtcacact tctcctgatg ccacccacca tgtctcaaat ggaagtacag
121 ctagcgctta ttctcaacga ctgcctgatc cttacctctg ggttgcagga gctccaaaac
181 aaaatacaat atgcccgcac gataccccac cgcgaggcga cgcgtcgtac gcagacgtcg
241 accagtcagg cgccgccgct acccagttcg tcgcagacgc gtcttcagac ggaggagtac
301 gaggactaca atttcacgcc gtgcaattct gaatgttgcc tccagcaaga agaaggacaa
361 catggtggcc ttccgtcaga ctgggagcga ctctgagccg acccagggtc ccctgaccat
421 caccggcaac cccactctct cagccttcgg tgagcacatt gttatgtggc tgcctactgc
481 acgcaaccgc ggcacagttc cggaagagac ggaacgcaat tcgcaaacct gttttatgcg
541 cggcttgtcc gagcgcatca atatttccac ggacacgtca ctcccttgga cttggcggcg
601 catctgtttt acgctaaaag gcttgggtgt catcagacgg gatggcacag ccattaatgt
661 cttatccttt gaggaggctg cgccgaatgg ttacgttcgc ttagcccgca attacagctc
721 tgtcggcggc gatcccaatt gggaggctat tgccgagcaa ctcatttcgc ttattatgga
781 cggcacacgc ggcattgatt tccttgatct caccacggcc aagacggatg gtacgaatgt
841 caccatcaag tacgaccgca ctttcagatt ggcttccggg aatgattcgg gtattcagaa
901 ggtttacaag ttgtggcatc ccatgaataa aaacttggtt tatgatgatg atgaggacgg
961 aggcgacatg gtcggcaact caatcagcac tcaagggaag cctggtatgg gagattatta
1021 cgtggtggat attttcaagg cgcatcccgc cgcaactagt tcggatcatt tgttatttga
1081 tccgatggct actctatatt ggcacgaaaa atagtttcgt tgcactccac aaaaatacaa
1141 ttgtcctcca tccattgcac atcatcctga ctcatatcgt tacgtgggtc actgttggcc
1201 aaccaaattg agggtttgcc ccactgcact aatgcaggtt ccctgtacaa tctcttcact
1261 gtgacccaag cctgcgcccc caaccattcc ttaaatgacg ggaagaattt catcccgcca
1321 cgtatatcgt cgaaaatggc ataatcgacg tcaggtgcct tcatgcactc gtctccactc
1381 acaagtccaa cacaataaat gtgttgtccg agggatctag cccaaagagt ttttccggtg
1441 cgagatctcc cgaataggca taaggacttg catctgccta aacataatta gcataagttc
1501 aaccgccgga ggcctcctat tagactacga acggcgcacc gagcccgacg gagggggggg
1561 taggggttcc cctttagggg atcccccccc cggaggagat aggcggaggt gtaagatcac
1621 ttaccccgac gctctccacc accaattcct gcctgatcga gccactctct tctcccatca
1681 aggtctccat cggtgaaact gattccgatt gggtgctcat acacgggagg gtcaggcgca
1741 aatctccagt ccgcgtactt gctgagttgg gtgaaagaag ttgctgcagc ctttggatca
1801 agctcgtgac acagttccca aaactgttct cgattctcag cctgcgtgat cgcagtccac
1861 ttagcatgag tcgacccatc tcctcctccg ctcttcccct cgggtctacc cagacctcct
1921 gccaccacgt cgccgtcttt gattgcgtag tcgtaaccct tctctggagt tcctcgagac
1981 tgcgaaatgt ttgggtggtg accatcaaca tcgaagatat cacttcgccg agttcgaaat
2041 tttctgttga aatcgacgaa agcatggagg tgaattccgc catcctcgtg acgctctcgt
2101 ccaatgatgc attctgctcc cagtgttgaa agcaagtcgt taaccgccca agggtcgagg
2161 tctccgcatt gagcgtaagt gaggaggaca tagcgactgt tgacttggaa tgctgacatg
2221 atgtgtccaa agtgtcctgg gcgaaac
//
