LOCUS NC_030308 3782 bp RNA linear VRL 13-AUG-2018
DEFINITION Phytomonas serpens narnavirus 1 isolate PserNV1, complete genome.
ACCESSION NC_030308
VERSION NC_030308.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Phytomonas serpens narnavirus 1
ORGANISM Phytomonas serpens narnavirus 1
Viruses; Riboviria; Orthornavirae; Lenarviricota; Amabiliviricetes;
Wolframvirales; Narnaviridae; Narnavirus.
REFERENCE 1 (bases 1 to 3782)
AUTHORS Akopyants,N.S., Lye,L.F., Dobson,D.E., Lukes,J. and Beverley,S.M.
TITLE A Narnavirus in the Trypanosomatid Protist Plant Pathogen
Phytomonas serpens
JOURNAL Genome Announc 4 (4), e00711-16 (2016)
PUBMED 27469953
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3782)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2016) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3782)
AUTHORS Akopyants,N.S., Lye,L.-F., Dobson,D.E., Lukes,J. and Beverley,S.M.
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2016) Molecular Microbiology, Washington
University School of Medicine, 660 South Euclid Avenue, Saint
Louis, MO 63110, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KU882057.
##Assembly-Data-START##
Assembly Method :: CLC Genomics v. Workbench 7; DNASTAR v.
Lasergene12
Sequencing Technology :: Sanger dideoxy sequencing; Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3782
/organism="Phytomonas serpens narnavirus 1"
/mol_type="genomic RNA"
/isolate="PserNV1"
/isolation_source="Lycopersicon esculentum"
/host="Phytomonas serpens 9T"
/db_xref="taxon:1856627"
/country="Brazil"
/collection_date="May-1989"
gene 83..3709
/locus_tag="A9286_gp1"
/db_xref="GeneID:28799049"
CDS 83..3709
/locus_tag="A9286_gp1"
/note="RdRp"
/codon_start=1
/product="putative RNA dependent RNA polymerase"
/protein_id="YP_009256557.1"
/db_xref="GeneID:28799049"
/translation="MAKHVDPANLAWSIPSAEKRFSFFTIISEETQLQSRIAYDNVLK
LWVDPESVTVGTVGQGPLNLHRVGSPTPSRAPVPQQAVINPNGGPKAHSTPKRKRSRS
AVKDPSIGGFKTSNPQLSQRKTAYGKRGPSSDASDRDKKQGLRKEKTHSPKEDARTPH
AVRHVSARPTRGRSRERQAEDKEVLHQLSKVGKVQNRPQKDPKVYKDFRDRCDKKGYN
PSYLRWYCIGSVSQYKPPYPFHLYLEVQKDYQEKLLKQERSQHPDLDDEGFKAFIAKD
SKTSWLSQEPHRCKVRNLRSTILNEIAYLQPEIQRAYGHLSLNDLIEAQNNTLAFYDH
VFFFRENLIGHSKVISIAMKYFHASLNNRDRAIAWFKDYIEVIKRTLASTEDSYKTAL
EGLKQKNESLYKENIFLPLLDLENWRTIASTKTRTHYLERVCGSLTARAMALPSRNLE
NQAYERFKSIISREDPCQVDLTEVRRLARMFGKECIKSGTPPPAQITKLDLGTTACLE
YTHSDGGRTAFFRDRFLPWVKDQPQEDEVIHYKGRPVLTIPAGIRRFKSIVPPGVEPP
EGELFTDPYPGLEQEQLTLQLFGWPDTCQTGYSPCIGYQLFVYSLSKDCTKDLYTSDG
LEYPLVHASPVLEHGGKTRWITIMSMFDSIVQDMAQNQFQPYLLKHPDVCPIFTKSNL
AWQMLNKAPPRDLSFHDRMYVSDYSNATDAIDHRLARNLLEGFCEGVGMDHESALIGP
GIDSLCRPKALMHRRDRNQEGKVPTITKSGIFMGEPLTKVTLTLLMHVLPLLALASSE
KGKKSVEGEEFHQPSWFFYYAPGDDHVATGPDWFLEALAQTSTKLGMLLNKDKTYLTK
TFAPLCEQWIYVPNLRNITPTKDIPKDVEVYLRSAWVEILKVKIFSPSSVTEKFYHVE
DYSVLGRGKHLSTCLHTMVSSWSNSERENFRDYFIARYLDQLPPKTWWQYHFVFLQTQ
VGGLGLSISYEEENRHWNKIPALIRKSMVSIYTSDASELWEKLPSIHMPKAVYGYDTS
QLEDAVTVLVHSYMDRNLLTPDTSGGGYTLAEIKGTIKGLLFDYAISSERLSIHRRGT
SQRYETRLRNCFSSCCDLRDLKDVEDRPNYFIVLNEEEKGLIPRLFEDPPSEYSCVTM
EEYRISSIEYSPKTNPLPHYALISKVKDYLPRFTLNKEALNNLRRCSVFLGVPTKVLR
EMPI"
ORIGIN
1 acgctattct ggctacagtt tctgtacctt attgtaagaa cttcaaagag ctctcaccta
61 cgcttataaa agcttaggta caatggccaa acacgtcgac cctgcaaatc ttgcatggtc
121 gatacccagt gcggagaaaa gattctcctt cttcaccatc ataagtgaag aaacacagct
181 acaaagtcga attgcctacg acaatgtact gaagctctgg gtagatccgg aatcggtcac
241 tgtagggacg gtgggccaag gccctctgaa cttacaccgt gttgggagtc caaccccttc
301 acgggcacct gttccacagc aggcggtcat aaaccccaat gggggaccga aggctcactc
361 tacacctaaa aggaagagga gccgttccgc tgtaaaagat ccgtcaattg gaggttttaa
421 aacctccaac cctcaattgt cccaaagaaa aactgcttat gggaagcgag gaccctcgtc
481 tgatgcttca gaccgggata agaagcaggg gctccgaaag gagaaaaccc actccccgaa
541 agaggatgca cggaccccgc atgccgttag gcacgtctct gcacgaccaa ctaggggtcg
601 ttctagagaa aggcaggcgg aggacaagga agtcctacac caactttcaa aagttgggaa
661 ggtccaaaac cgtccccaga aggatcctaa agtatataag gacttccggg atcggtgtga
721 taagaagggt tataatcctt cctatctacg gtggtattgt atcggctccg taagccaata
781 caaacctcct tatccttttc acctctatct cgaggtacag aaggactatc aggagaaact
841 cctcaagcaa gagaggagtc aacaccctga ccttgatgat gaaggcttta aggccttcat
901 tgccaaggac tcaaagacct cttggttatc ccaggaaccc caccggtgta aggtgaggaa
961 cttacggagt acgatcttga acgagatcgc atacctccag ccggagatcc aaagggccta
1021 tggccatttg tccctcaatg acctcattga ggctcaaaat aacacgttgg ccttttatga
1081 ccatgtgttt ttcttccgag agaacctaat aggtcactcg aaagtgatct ctatcgcaat
1141 gaagtatttt catgcttctt tgaacaatag agatcgggcc atagcgtggt ttaaggacta
1201 cattgaagtc attaaacgca ctcttgcatc cacagaggac agttacaaaa ctgccctgga
1261 ggggcttaaa cagaagaatg aatctctcta taaggagaac atttttctcc cactcctgga
1321 tttggaaaac tggagaacca tcgccagtac caaaacccgc actcattatc ttgagcgcgt
1381 ctgtggatct ctaacggcta gggccatggc actccctagc cgcaatctcg aaaatcaggc
1441 ttacgaaagg tttaagtcta tcataagccg cgaggatcct tgccaggtcg atctaactga
1501 agttaggcgc ctggctagga tgttcgggaa ggagtgcatt aaatcaggca cccccccgcc
1561 agctcagata accaagctgg acctcggaac tacagcctgc ctcgagtata cacactcgga
1621 tggtggcagg acggcgtttt ttcgagaccg gtttctcccg tgggtcaaag accaacccca
1681 ggaggacgag gtcatccatt acaaaggaag acctgtcctt accattccgg cggggatacg
1741 aaggtttaag tccatcgttc ctcccggagt ggaaccacct gaaggggagc tgttcactga
1801 tccttatcca ggacttgagc aggagcaact aacgttgcag ctcttcggat ggcctgatac
1861 atgccaaacc ggttatagcc catgcatagg gtatcagctc tttgtgtaca gtttatccaa
1921 ggattgtacc aaggacctat acactagtga tggtcttgag tatcctctcg ttcatgcttc
1981 ccctgtgttg gaacacggag ggaaaacgag atggatcaca ataatgtcaa tgtttgacag
2041 tattgtgcag gatatggctc agaatcaatt ccagccatac ctactcaagc atcctgacgt
2101 atgtcccatc tttaccaaat caaatttggc atggcagatg ctaaataaag ctccgcctag
2161 ggacttgtcc ttccatgatc ggatgtatgt atccgattat tcgaatgcta ctgatgcaat
2221 cgaccatcgc cttgcaagga acctcctaga ggggttctgc gaaggtgtgg ggatggacca
2281 tgagtctgct ttgatcggcc cagggattga ttccctctgt cgaccaaaag ccctcatgca
2341 tcgtcgggat cgcaaccagg aaggaaaggt tccaactatc accaaaagtg gaatctttat
2401 gggtgaaccc ctcacaaaag taacactgac attgttgatg catgtgttac ccctacttgc
2461 tctagcctcc tcggaaaagg ggaagaagag cgtagaaggt gaggaatttc accagccttc
2521 ttggttcttc tactacgcgc cgggggatga ccatgtagcc acaggaccgg attggttcct
2581 ggaggcactt gctcaaacct ccaccaaact tggtatgttg ttaaataagg ataaaaccta
2641 tttaacaaag acctttgctc ccctatgtga gcaatggatc tatgtcccta atttaaggaa
2701 catcacaccg acgaaggata tcccaaagga cgttgaagtc tatttgagat cggcgtgggt
2761 agagattctc aaggtgaaga tattttctcc atcttcagta actgagaagt tctaccatgt
2821 agaagattat agtgtgcttg gcaggggaaa acatttgtcc acctgcctgc acactatggt
2881 atcctcatgg tccaattcgg aacgtgagaa cttccgggac tacttcatag cccggtatct
2941 ggaccaacta ccacctaaaa cttggtggca gtaccacttc gtgtttcttc agacacaagt
3001 gggtggactt ggattatcca tctcctatga agaggagaat aggcactgga ataaaattcc
3061 tgccctgatc cgtaagtcca tggtcagcat ctatacttct gatgcatcag agctttggga
3121 aaaactccca agcatacaca tgcctaaggc cgtgtatggc tacgatacat ctcagcttga
3181 ggatgccgtt acagtcctag tccattctta tatggatagg aatctgttaa cgccagatac
3241 cagcggaggg ggatacaccc tcgccgaaat aaaaggcacc attaagggcc ttctatttga
3301 ctatgctatc tcttcagaga gactaagcat tcaccggcga ggcaccagcc agagatatga
3361 gaccagatta agaaactgtt tctcctcttg ctgtgacctc agagatctta aggatgtcga
3421 ggataggcct aactacttca tcgttttgaa cgaggaggag aagggactaa ttccaaggct
3481 ctttgaagat cccccgagcg agtattcgtg tgtaactatg gaagagtatc gcatctcttc
3541 tatagagtac agtccgaaaa ccaacccctt acctcactat gcgttgataa gtaaggtaaa
3601 ggattatctt cctaggttca ccctcaataa agaggcgttg aacaacctga gaagatgctc
3661 ggtgttcctc ggcgtaccga ctaaggtgct gagggagatg cccatctgag aggtttgagt
3721 acactcatcc ctgatgggcc gtgctgcata gaacttatta tagcctatgc agctttccgc
3781 gt
//
