LOCUS NC_030405 3947 bp RNA linear VRL 13-AUG-2018
DEFINITION Etheostoma fonticola aquareovirus isolate San Marcos 2003 segment
1, complete sequence.
ACCESSION NC_030405
VERSION NC_030405.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Etheostoma fonticola aquareovirus
ORGANISM Etheostoma fonticola aquareovirus
Viruses; Riboviria; Orthornavirae; Duplornaviricota;
Resentoviricetes; Reovirales; Spinareoviridae; Aquareovirus.
REFERENCE 1 (bases 1 to 3947)
AUTHORS Iwanowicz,L.R., Iwanowicz,D.D., Lewis,T., Brandt,T., Cornman,R.S.
and Sanders,L.
TITLE Isolation, characterization and molecular identification of a novel
aquareovirus detected in the endangered fountain darter, Etheostoma
fonticola
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3947)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (30-JUN-2016) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3947)
AUTHORS Iwanowicz,L.R., Iwanowicz,D.D., Lewis,T., Brandt,T., Cornman,R.S.
and Sanders,L.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2015) National Fish Health Research Laboratory,
USGS, Leetown Science Center, 11649 Leetown Road, Kearneysville, WV
25430, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KU194213.
GenBank Accession Numbers KU194213-KU194223 represent sequences
from the 11 segments of Etheostoma fonticola aquareovirus.
##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 8.5.1
Sequencing Technology :: Sanger dideoxy sequencing; Illumina;
IonTorrent
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3947
/organism="Etheostoma fonticola aquareovirus"
/mol_type="genomic RNA"
/isolate="San Marcos 2003"
/host="Etheostoma fonticola"
/db_xref="taxon:1862978"
/segment="1"
/country="USA"
/collection_date="Mar-2003"
gene 14..3907
/locus_tag="BBA80_s1gp1"
/db_xref="GeneID:28218223"
CDS 14..3907
/locus_tag="BBA80_s1gp1"
/note="VP1"
/codon_start=1
/product="putative guanylyl/methyl transferase"
/protein_id="YP_009259500.1"
/db_xref="GeneID:28218223"
/translation="MATVYGIQLTNRLNTATVRRPLRLRRYDSYITTFTTPNGISQLY
RALDFQPTQFTASILQTFPPLNAWNPTPQFIPSDLDLSQWKEWITDRMRSLATVLQRA
YPLVANARREVNPIVIGLITSAFLNQRPVDRFLPLLFLEPGQRDPIAPLVTVDVTLSD
DTYVSGNVLYTPAGLKYLTLRAYDPTRPSSICTFGKHVPFYAIAAFYPHERARLSILH
RYNGGPPLLEHFDQPTYGPHVLIPALGSPEGYDAVTPTFADLLLTEGLLDAFRLNASA
GPSTAVARIDQTYHVVMNGNPGDYSQLASRLTNLSLLAVQGCQMTVQVSDHPSMNEVC
GFLVRLLGPGDPQRLINYQTDQIQIWRGSPFPFGNNPRYIRRRGRNPFTVGTTTYVPD
TKTPLPFLPQYRQATVNKNNARASYQANALPGLPIYHGFALTGGAFFQSRDITGDPAN
VWPVNTLPDLPQDYFSIPARQRRELLSRLRSPSDRSLVKDTHNISFASTVLNPVNNQI
ILTEGFSMAYLGAASTHGSSDQPLIIDALKTGAVPGVPVPSKITQFGYDVANGSIMDA
TLAPPTGTFSFVYSDVDQVEDAGLSIVAANRVAAAVTHVALSMTTAGGLTVVKVNFPT
PAFWTQLFRQHATHARALYILKPLIVNSVEVFLLFVSRTSDGNLVSSPSLRQFLVQLF
DRSAQLSELMAHVPLLGDVDDGTTSLGFNACRLYGPDLPAVNVTPEVQTLAYQLATIV
PSTSFIAREDYDGATAVTFYGKRTFLSRRRLDRLVSVPVPATNAINHQTRFTGSPTYQ
LFPINPAPVTQLLAGAYNRMISAQLTHVGPQSLVDCGTGPECRVLSLVPPRTAITMID
ARPPAELLAAFDPAMNQYIVGDFLDPALWLVNPYDALTAIFSLGAAFAGAGVDLVAGL
TAFLRLVQPGNLQHLWLQLNTPLTSNASLPGLLDIDTRTNQYVFNGGQRTEPYAPPAD
ILAAVRQVFPAATTSWLTASPTMDWAEYVIGLGSSMSLDDVTTMITYSGLAPILHIDL
TQRPMDVPVPLVVGVQANVHVAAPSQQTTVVGSIAGVQVFTADGVTAPSTLGPLAAVW
DPALLRWDLTLTPNQAGVLDVVVDSAGVLLNRGSTTIALPPAAIAVNFPPAANRDYTN
AGNDARVACDPFYRLGVFVSVNGTFQPVNPERAAIVAVPNARVLHYVYDLSDNHVLMY
ICDITDNSVGRNIALPLADIFQTVFPNNTPLLASPPYPTASGRLLLNGQVFIDLDPLP
PVLPPGVQIQALSTAIEPARPTVEVPAGTYVYVVV"
misc_feature 14..3901
/locus_tag="BBA80_s1gp1"
/note="Reovirus core-spike protein lambda-2 (L2); Region:
Reovirus_L2; pfam06016"
/db_xref="CDD:283634"
ORIGIN
1 gttttatcac gacatggcga ccgtatatgg tatccaactc acaaaccgac tgaacactgc
61 aaccgtccga cgcccgctcc gactcagacg ctacgactca tacatcacca cctttactac
121 tcccaacggc atatcacaac tatatcgcgc cttggacttc cagcccacgc agttcaccgc
181 gtccattctg cagaccttcc ctcccttgaa tgcttggaat cctaccccac aatttattcc
241 cagtgacctc gatctatccc aatggaagga atggatcacc gatcgtatgc gttcgcttgc
301 cactgtcctt caacgcgcat atccactggt tgccaacgcc cgccgcgagg tcaaccccat
361 cgttattggc ctgatcacct cagctttcct aaatcagaga cccgtagatc ggttcctacc
421 actgttattt ctcgagcctg gccagcgtga tcccatcgct cccctcgtca ccgtggacgt
481 caccctctca gacgacacgt acgtatccgg caacgtgctc tacaccccag caggactgaa
541 gtatctgacg cttcgcgctt atgatcctac ccgcccttcc tccatctgta ccttcggaaa
601 gcacgtaccc ttctacgcga tagctgcctt ctatccacat gagcgtgcgc gcttatccat
661 tttacaccgg tataatggtg ggcctccctt actggagcat ttcgatcaac ccacgtacgg
721 gccccacgtg ctcatccccg cgctaggttc acccgaaggt tatgacgcag tcacccccac
781 gttcgccgat ctcctactga ccgaaggctt actagatgcc tttagactca acgcctctgc
841 cggtccctca actgctgtgg cgcgcattga tcagacgtac cacgtggtca tgaatgggaa
901 tcctggcgac tactcccagc tggcgtcccg tctgactaat ttgtcgctcc ttgccgtcca
961 aggctgccag atgacggttc aggtctcgga tcatccatca atgaatgaag tctgcggctt
1021 cctcgtccgt ctgctcggtc ctggcgatcc tcaacgactc atcaactatc aaacagacca
1081 gatccagatc tggcgcggca gtcccttccc cttcggcaac aacccccgct acattcgacg
1141 tcgtggccgt aaccctttca ctgtcggcac taccacctac gtcccagata cgaagacgcc
1201 cctaccattc ttgcctcaat accgtcaggc tacagtgaac aagaataatg ctcgagcgtc
1261 atatcaggcg aacgcgctcc ccggcctgcc catataccat ggatttgctc tcaccggtgg
1321 tgcgtttttc cagtcgagag acatcacggg agacccagct aatgtctggc cggttaacac
1381 gctgcccgac ctacctcagg actatttctc catcccagcc cgacaacgtc gcgagttgct
1441 gtctcgcctg cgctctccct cagatcgatc acttgtcaag gacacccata acatctcatt
1501 cgcatcgacg gtactcaatc ccgtgaacaa ccaaatcatc ttaactgagg gtttctcgat
1561 ggcgtacctc ggtgctgcgt caactcacgg gtcttcagat caaccgctaa tcattgacgc
1621 actcaaaacc ggtgccgtgc ccggggtccc tgtcccgtcc aaaatcaccc agttcggtta
1681 tgacgttgcg aacggaagta ttatggatgc gaccctagcc ccgcccactg gcacgttctc
1741 attcgtttat tctgatgtgg accaagtgga ggatgctggc ctatccatcg ttgccgctaa
1801 ccgggtagca gctgctgtga ctcatgtcgc tctgtccatg acgaccgctg gtggcctgac
1861 cgtcgtgaaa gtcaacttcc cgactcccgc tttctggact caactgttcc gccaacacgc
1921 gacccatgcg cgcgccctgt acattcttaa acccttgatc gttaactcag ttgaagtatt
1981 cctcctattc gtcagtcgga cctcggatgg caacctcgtc tcatcgccgt cactccgtca
2041 gttcctcgtg caactattcg atcgctcagc acaactttcg gagttgatgg cgcatgttcc
2101 actgctagga gacgtcgatg atggaacaac ttcactcggg ttcaatgcct gtaggctgta
2161 tggtcctgac ctgcctgctg tcaacgtcac tcccgaagtt cagactctcg cgtatcagtt
2221 ggccaccatc gttccttcca cctcatttat tgcacgcgaa gactatgacg gtgcgaccgc
2281 tgtcactttc tacggtaaac gcacattcct gtcccgccgc cgcctggacc gcctcgtcag
2341 tgtgcccgtt cccgccacta acgcgatcaa ccaccagacg cgcttcacgg ggtccccgac
2401 ctatcagctg ttccctatta atcccgcccc cgttacccag ctgctcgctg gtgcctacaa
2461 ccgtatgatc tccgcccagt tgacgcacgt cggacctcaa tcgctggtgg actgtggaac
2521 tggccccgaa tgccgcgtac tctccctggt ccctccgcgc accgccatca cgatgatcga
2581 tgctcgtccc cccgctgaat tgctggctgc attcgacccg gccatgaacc aatatattgt
2641 tggtgatttt ctcgacccgg ctctctggtt ggttaacccg tacgacgctc tcactgccat
2701 tttctcactc ggtgcagcgt ttgccggcgc gggagttgac ctggtggcag gccttactgc
2761 gttcctacgt ctggtacagc ccggcaacct ccagcacttg tggctccagc tgaacacccc
2821 acttacctcc aacgcttcgc tgcccggtct gcttgacatt gacactcgta cgaatcagta
2881 cgttttcaac ggtggtcaac gtaccgagcc ctacgccccc ccagctgaca tacttgctgc
2941 agtgcgccaa gtattccctg ccgccactac atcttggctc acggcttccc ctaccatgga
3001 ttgggctgaa tacgttattg gccttggttc ctccatgtcc ctggacgacg tgaccaccat
3061 gataacctac tctggcctag caccgatctt acacattgat ctgacccaac gccccatgga
3121 cgtccccgtc ccgcttgtgg ttggtgtcca agctaatgtt cacgtcgccg cccccagtca
3181 gcagaccact gtcgtcggct caattgctgg ggttcaagtc ttcaccgccg atggcgtgac
3241 agcaccatcc actctaggcc ccttggccgc tgtctgggat ccggctctat tacgttggga
3301 tttgaccttg accccgaatc aagcgggtgt gctcgacgtt gttgtggaca gtgccggtgt
3361 cctgcttaac cgcggctcaa cgaccatcgc cctcccccct gccgctatcg ccgtcaactt
3421 cccacctgcc gctaaccgtg actacaccaa tgctggcaac gatgcgcgag tcgcctgtga
3481 tccattttac cgtttggggg tcttcgtcag tgtaaacgga acgttccagc cggttaaccc
3541 agagcgcgcc gccatcgtgg ccgtccccaa tgcccgcgtc ctccattacg tctacgatct
3601 ctcagataat cacgtcctga tgtacatatg tgacatcaca gacaacagcg tgggtaggaa
3661 catcgctctc cccttagccg acatcttcca gaccgtgttc cccaacaata cgcctctgct
3721 tgcctctcca ccgtatccca ccgcgtccgg ccgtctccta ctgaatggtc aagtcttcat
3781 tgacctcgac ccactgcccc ccgtgctgcc tcctggcgtc cagattcagg ccctgtccac
3841 agctattgag ccagctcgtc cgactgtgga agtgccagcg ggtacgtatg tgtatgtagt
3901 agtttagtct gagtgagcgc ccagcggttc gcgtcgtgca attcatc
//
