LOCUS NC_031140 1709 bp cRNA linear VRL 02-JAN-2021
DEFINITION Huangpi Tick Virus 2 strain H114-17 nucleocapsid protein (N) and
nonstructural protein (NSs) genes, complete cds.
ACCESSION NC_031140
VERSION NC_031140.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Huangpi Tick Virus 2
ORGANISM Huangpi Tick Virus 2
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae;
Phlebovirus.
REFERENCE 1 (bases 1 to 1709)
AUTHORS Li,C.X., Shi,M., Tian,J.H., Lin,X.D., Kang,Y.J., Chen,L.J.,
Qin,X.C., Xu,J., Holmes,E.C. and Zhang,Y.Z.
TITLE Unprecedented genomic diversity of RNA viruses in arthropods
reveals the ancestry of negative-sense RNA viruses
JOURNAL Elife 4, e05378 (2015)
PUBMED 25633976
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1709)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-SEP-2016) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1709)
AUTHORS Li,C.-X., Shi,M., Tian,J.-H., Lin,X.-D., Kang,Y.-J., Qin,X.-C.,
Chen,L.-J., Xu,J. and Holmes,E.C.
TITLE Direct Submission
JOURNAL Submitted (28-SEP-2014) Department of Zoonosis, State Key
Laboratory for Infectious Disease Prevention and Control, National
Institute of Communicable Disease Control and Prevention, Chinese
Center for Disease Control and Prevention, Changping Liuzi 5,
Beijing, Beijing 102206, China
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KM817735.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1709
/organism="Huangpi Tick Virus 2"
/mol_type="viral cRNA"
/strain="H114-17"
/host="Haemaphysalis sp."
/db_xref="taxon:1608048"
/segment="S"
/country="China"
/collection_date="2013"
gene 47..796
/gene="N"
/locus_tag="BI075_sSgp1"
/db_xref="GeneID:29061207"
CDS 47..796
/gene="N"
/locus_tag="BI075_sSgp1"
/codon_start=1
/product="nucleocapsid protein"
/protein_id="YP_009293592.1"
/db_xref="GeneID:29061207"
/translation="MMAIRAPIDFVLELASEPWDADNVASLVELYAYQGFDPTVIQQE
IVRKATLGKRDWKADVRNMIILNVTRGNKLDKMAAKMTDKAKDALKDLRRIYELKDSK
PGAKDITLARVANVHGASTCSMLRLVPESLPVPHSHMNTLSQGYPVXMMHTSFGGLIN
PNAPGAQDVTDAHKLYLVEFSRVINRAGGKSVGEIVESFRTPLASAIGSQFLKDPQKN
AILKNLGIYDENMHISEKVVAAAETFRRMAM"
misc_feature 74..724
/gene="N"
/locus_tag="BI075_sSgp1"
/note="Tenuivirus/Phlebovirus nucleocapsid protein;
Region: Tenui_N; pfam05733"
/db_xref="CDD:368585"
gene complement(886..1680)
/gene="NSs"
/locus_tag="BI075_sSgp2"
/db_xref="GeneID:29061206"
CDS complement(886..1680)
/gene="NSs"
/locus_tag="BI075_sSgp2"
/codon_start=1
/product="nonstructural protein"
/protein_id="YP_009293593.1"
/db_xref="GeneID:29061206"
/translation="MNTIAIYPTGIVSETYLKKMFLIAYETRDTIWDFLEQGLQPCYI
DLTGETTLINDLSSGWLSADCTLFEIFQNATDSEFRSYSALPTACSWPFGRPSLALGR
IYKRITVWDHPELVLTPDLVKSFCRQVLRQSKRQSNDMPLSDQIILCYQKIKFRMIRF
GLDYHLISGKCLMKDLFLCQLLTAQCILERQRLKCEQRFAVIVKERQRKETQETLSLI
ERERERMALGLPLNVSLFIGNPDFLRCWLDTKWTRDWPTVQESIIQ"
misc_feature complement(1120..1611)
/gene="NSs"
/locus_tag="BI075_sSgp2"
/note="Rift valley fever virus non structural protein
(NSs) like; Region: NSs; cl42015"
/db_xref="CDD:455360"
ORIGIN
1 acacaaagac ccgagaactt ttcgtaatct gcgctaagac aagtccatga tggccattcg
61 tgctccaatt gactttgtct tagagcttgc tagtgagccg tgggatgctg acaacgtggc
121 ttctctggtg gagctttatg cttaccaggg atttgaccca actgtcatac agcaggagat
181 agtcaggaag gccacgttgg gaaagaggga ctggaaggct gatgtcagga acatgatcat
241 cctcaatgtc accagaggca acaagttgga caaaatggcc gctaaaatga ctgacaaggc
301 caaggatgct ctcaaggact tgaggaggat ctatgagcta aaggactcca agccaggtgc
361 aaaggacatc actcttgcta gagtggcaaa tgttcatgga gcttctacct gctccatgct
421 gcgattggtt ccagagtctc ttccggtacc acactcgcac atgaacaccc tgagccaggg
481 ctaccctgtc yctatgatgc acacctcatt tggaggcttg atcaatccta atgctccggg
541 agctcaggac gtgactgatg ctcacaagct gtaccttgtg gaattctcca gggtcatcaa
601 cagagctgga ggcaaatcgg tcggagagat tgttgagagt ttcagaacgc cactggcctc
661 tgccattggc agccagtttc tgaaggaccc ccagaagaat gctatcctta agaaccttgg
721 aatctatgat gagaacatgc acatctcgga gaaagtggtt gctgcagctg agaccttccg
781 ccgcatggca atgtaaggtg ctgtaggggg aaagggaagg gaagggaggg atccagggag
841 gggatctggg ggagggggga ggggaaactg gcagccactt tgacttcact gaatgatgct
901 ctcttgaact gtgggccagt cccttgtcca cttagtgtct agccagcaac gcaggaagtc
961 aggattccca atgaacaggg atacattcaa cggcaagcct aatgccattc tttctctttc
1021 tctctcaatc agtgaaaggg tctcttgagt ctctttcctt tgtctctctt tgacaatcac
1081 tgcaaacctt tgttcgcact tcagtctctg tctttcgaga atgcactgtg ctgtcagtag
1141 ctggcacaag aacaagtcct tcatcaggca ctttccagag atgagatgat aatccaggcc
1201 aaaccttatc atcctaaact taatcttctg gtagcacaag atgatctgat cactgagtgg
1261 catgtcatta gattgcctct tagactgcct cagaacttgc ctgcagaaac tcttcaccag
1321 gtcgggcgtg agcacaagtt cggggtgatc ccagacagtg attctcttgt agatcctgcc
1381 tagagcaagg ctaggcctac caaatggcca tgagcaagca gttgggagag ctgaatagct
1441 cctaaactca gaatcagtgg cgttctggaa aatttcaaac agagtgcagt cagcagaaag
1501 ccagcccgag gaaagatcat tgatcagagt tgtctctccc gtcagatcaa tataacaggg
1561 ttgaagtcct tgctcaagga agtcccaaat cgtgtctcta gtctcgtagg caatcagaaa
1621 catcttcttc aagtatgttt ctgacacaat ccctgttggg tagattgcga ttgtgttcat
1681 gttgatgaaa atctcggggg tctttgtgt
//
