LOCUS NC_032865 3164 bp RNA linear VRL 13-AUG-2018
DEFINITION Beihai sobemo-like virus 27 strain BHWZXX15541 hypothetical protein
1 and hypothetical protein 2 genes, complete cds.
ACCESSION NC_032865
VERSION NC_032865.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Beihai sobemo-like virus 27
ORGANISM Beihai sobemo-like virus 27
Viruses; Riboviria.
REFERENCE 1 (bases 1 to 3164)
AUTHORS Shi,M., Lin,X.D., Tian,J.H., Chen,L.J., Chen,X., Li,C.X., Qin,X.C.,
Li,J., Cao,J.P., Eden,J.S., Buchmann,J., Wang,W., Xu,J.,
Holmes,E.C. and Zhang,Y.Z.
TITLE Redefining the invertebrate RNA virosphere
JOURNAL Nature (2016) In press
PUBMED 27880757
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 3164)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2017) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3164)
AUTHORS Shi,M., Lin,X.D., Tian,J.H., Chen,L.J., Chen,X., Li,C.X., Qin,X.C.,
Li,J., Cao,J.P., Eden,J.S., Buchmann,J.P., Wang,W., Xu,J.G.,
Holmes,E.C. and Zhang,Y.Z.
TITLE Direct Submission
JOURNAL Submitted (16-SEP-2016) Department of Zoonoses, National Institute
for Communicable Disease Control and Prevention, Chinese Center for
Disease Control and Prevention, Changping Liuzi 5, Beijing, China
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KX882791.
##Assembly-Data-START##
Assembly Method :: Trinityrnaseq v. 2.0.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3164
/organism="Beihai sobemo-like virus 27"
/mol_type="genomic RNA"
/strain="BHWZXX15541"
/host="Penaeid shrimp"
/db_xref="taxon:1922699"
/country="China"
/collection_date="2014"
gene 94..1815
/locus_tag="BWU93_gp1"
/db_xref="GeneID:30854081"
CDS 94..1815
/locus_tag="BWU93_gp1"
/codon_start=1
/product="hypothetical protein 1"
/protein_id="YP_009336756.1"
/db_xref="GeneID:30854081"
/translation="MEFVAKARAFLARMCLYFVGFVVTITNEHLVALFGAILRAVVAL
FECSMRGVHHMVGALLPEALNPPNRKNDLLRQYMEANEAEERSRSATDIIYGTSELRE
LHMDLGYQAGFQHASEMIISMLALGCLAAWLFSNMPSMNGIGARLRGCLKWRPTKAVR
LTDVDAKAAAFATILPETAIPGSNELSMPMTKSQVVMFLRETDAQGKNVDTVLGNGIR
FTATRLVFPSHLGCESFGEVWLSSKNGGEPFCLKLGLKGDYQAVAFSNDMSFVELPTT
VWAGLGVKVATIGALSTVGDNVTVVGARGKGTTGVLIAGYRMGDVIYNSTTLSGYSGA
PYHSGPMTLGVHTHGGKQNGGVAATYIRARLAIYDALELDIVAESSEDFMRKVFDSGK
RAHRTEDFGDFMVVEYHGNHHTVSKQLYDRIKSQTYHPSHLSRRTGLSSSEDSEYDSE
SEMDPPPQLESALNGPVATMAEPAVPGYDDGSGLPANIPSSKPPSAPPKKKKSKKSGD
SQRATERPTTSRKSEKTSSGGSQSRKSNPSRHKAVKRDIMTKFSELTPTHRARLLTQM
AQSLAKP"
gene 1854..3086
/locus_tag="BWU93_gp2"
/db_xref="GeneID:30854080"
CDS 1854..3086
/locus_tag="BWU93_gp2"
/codon_start=1
/product="hypothetical protein 2"
/protein_id="YP_009336757.1"
/db_xref="GeneID:30854080"
/translation="MKSFAVQSRTAHIVRERTISPTDEELEHILYHAEQALAPAKWKL
PSNWNSRTAFEAALAELDWQSSPGYPLLREAPTIGDWLLIKGTLERDPSKVERLWDMV
QKVLKGEYIHYWRVFIKSEPHKRSKALEGRWRLITAASLPVTVAWMMTFKKLNDRLSH
YDAALPVQQGYVWCSGGWKNFKRRIEQDGLTISVDKKAWDWGAPGWAFEADLELRTRL
CLNPSPEWHRVATLLYADAFQTAKLLLPNGIVYEQQFHGFMKSGCFNTISTNSNCQIL
LHYLAEYRWAKAEGVSIKEHSKILACGDDTLQAFYTPLYGELLEQAGCTVKEAAQNTD
FMGYNYDGPPEPMYFAKHLVKFALQKPALRPETLDSYMRMYATSESRHFWRAVANELE
IHLMSDSYYARWANVPEP"
misc_feature 2034..>2315
/locus_tag="BWU93_gp2"
/note="conserved catalytic core domain of RNA-dependent
RNA polymerase (RdRp) from the positive-sense
single-stranded RNA [(+)ssRNA] viruses and closely related
viruses; Region: ps-ssRNAv_RdRp-like; cl40470"
/db_xref="CDD:454764"
misc_feature 2196..2873
/locus_tag="BWU93_gp2"
/note="conserved catalytic core domain of RNA-dependent
RNA polymerase (RdRp) from the positive-sense
single-stranded RNA [(+)ssRNA] viruses and closely related
viruses; Region: ps-ssRNAv_RdRp-like; cl40470"
/db_xref="CDD:454764"
misc_feature 2421..2465
/locus_tag="BWU93_gp2"
/note="conserved polymerase motif A; other site"
/db_xref="CDD:438017"
misc_feature order(2628..2678,2682..2699)
/locus_tag="BWU93_gp2"
/note="conserved polymerase motif B; other site"
/db_xref="CDD:438017"
misc_feature order(2742..2753,2757..2786)
/locus_tag="BWU93_gp2"
/note="conserved polymerase motif C; other site"
/db_xref="CDD:438017"
ORIGIN
1 aaagttttga gcgattaact tagcctcggg ccaagtattc aaaaccattt tacattgctc
61 gctgaattac aatttaaatt cagcaaacac atcatggagt ttgtcgcaaa ggcacgtgcc
121 tttttggcta ggatgtgcct ctattttgtt gggttcgttg tgaccatcac caacgaacat
181 cttgttgctc tgtttggggc aattctcagg gccgtggtag cgctctttga gtgctccatg
241 aggggcgttc accatatggt gggcgctttg ctcccagaag ccctcaaccc ccccaaccgg
301 aaaaacgacc tcctccgcca gtatatggaa gccaacgaag ctgaggaaag atcacgatcg
361 gcaacggaca taatctatgg cacctctgaa cttagagagt tgcatatgga tcttggttat
421 caagccggtt ttcagcatgc ttctgaaatg atcatcagca tgttggccct tggttgcttg
481 gcggcatggt tgtttagcaa catgcccagc atgaatggaa tcggcgctag gttgcgaggc
541 tgccttaagt ggagaccaac taaagcagtc agactgaccg acgtcgatgc aaaggccgct
601 gcatttgcga caatattacc ggaaacagct atccccggat caaacgaact gtcgatgccc
661 atgaccaaat cccaggtggt aatgttcctt cgtgaaacag acgcccaggg caagaacgtg
721 gacacagttc taggcaatgg aataaggttc accgcaaccc ggctggtatt cccatcccat
781 ttggggtgcg agagtttcgg cgaggtgtgg ctcagttcca agaacggagg tgaaccattt
841 tgccttaagt tagggcttaa aggggattac caggctgtcg cgttcagcaa tgacatgtca
901 tttgttgaac ttccaaccac cgtgtgggcc ggactcggcg ttaaagtcgc caccattggt
961 gcgctctcca ccgttggaga caacgtcacc gtggtcggtg ctcgaggcaa aggaaccacg
1021 ggagttttga tagccgggta cagaatgggc gacgtcattt acaactccac gacattgtcc
1081 ggttacagcg gtgccccata ccactccgga ccaatgacct tgggtgttca cacccatggc
1141 ggaaaacaaa atgggggcgt ggcagcaacc tacatcaggg cgcgcctcgc gatctatgac
1201 gctctggagt tagacattgt cgctgaaagt tcagaagatt tcatgcggaa agtcttcgat
1261 agtggaaaac gagctcaccg aacagaggat ttcggtgact ttatggttgt cgaatatcat
1321 ggcaaccacc acactgtttc caagcaactc tatgatagga tcaagtcgca aacataccac
1381 ccttcccacc tcagtcggag aacaggactg agttcatctg aagattcgga gtatgactcc
1441 gagtcagaaa tggacccacc cccacagctc gaatccgccc ttaatggacc agtggccacc
1501 atggctgagc cggcagtccc tggatacgat gatggatctg gcttacctgc caacatccca
1561 tcgagcaaac cgccaagcgc tccccccaaa aagaaaaagt caaagaaatc gggggactcc
1621 cagcgggcga ccgagcgccc aacaacttct cggaaatcgg agaagacatc atcgggtgga
1681 agccagtcgc gaaagtccaa tccctcccgc cacaaggcag tgaagaggga tatcatgacg
1741 aagttctcag agcttacgcc aactcatcgg gctcgcttgt taacgcagat ggctcaatca
1801 ttggccaagc cctagacaac tacgtaccgg ccagaaccga cactgaggcg gcgatgaaat
1861 cgtttgccgt ccagagcagg accgcgcaca tagtgcgcga acgaaccatt agcccaacgg
1921 acgaagaact tgaacatatc ctctaccatg cggaacaggc cttagccccc gccaagtgga
1981 agctaccttc aaattggaat tccagaaccg ccttcgaagc tgcattagca gagctcgatt
2041 ggcagtccag ccctggatac cccttgttgc gggaagcgcc cactatcggt gattggctcc
2101 taattaaagg cacactggaa cgtgaccctt cgaaagttga acgactttgg gacatggttc
2161 agaaagtctt aaaaggggag tacatccact attggcgggt gttcatcaaa agcgaaccac
2221 acaagcgcag caaagcgctt gaaggacgct ggagacttat aacggccgct tccctgcccg
2281 taactgtcgc ctggatgatg acattcaaga aactgaatga ccgcctttcc cactacgacg
2341 ccgccctgcc agtgcagcaa gggtatgtct ggtgctcagg aggctggaaa aatttcaagc
2401 ggcgaatcga gcaggatggc ctaaccatct ccgttgataa gaaggcctgg gattggggcg
2461 ctccaggctg ggcgttcgag gctgacctcg aattgcgaac caggctttgc ctcaacccgt
2521 ccccagaatg gcacagagtg gcaacgctgc tttatgcaga cgcgtttcaa accgccaagc
2581 tgctcttacc taatggcatc gtgtatgagc aacaatttca tggtttcatg aagtcgggtt
2641 gtttcaacac catttccacc aacagcaatt gtcagatttt gctccattat ttggctgaat
2701 accgatgggc gaaagccgaa ggtgtttcaa tcaaggagca ttcgaagatt ttagcttgcg
2761 gtgacgacac cttacaagcg ttctacacgc ctctgtatgg tgagttgttg gaacaggcag
2821 gctgcaccgt aaaggaagca gcccaaaaca cagacttcat gggttacaat tatgatggcc
2881 ctcctgaacc catgtatttt gctaagcact tggtcaaatt cgctttgcag aaacccgcat
2941 tgagacccga aactctcgat tcgtacatgc ggatgtatgc aactagcgaa tcgcgccatt
3001 tctggcgagc ggtagctaat gaactcgaaa tccatttaat gagtgatagc tactacgctc
3061 gatgggcaaa cgttccagaa ccttaaaaca actaaggttc aaccaacacg aaccaagttt
3121 ggtgggtttg tgctgagtag ttaaaacgtc aaacatttcc gtca
//
