LOCUS NC_033272 4668 bp DNA circular VRL 21-DEC-2020
DEFINITION Chicken stool-associated circular virus strain RS/BR/2015, complete
genome.
ACCESSION NC_033272
VERSION NC_033272.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken stool-associated circular virus
ORGANISM Chicken stool-associated circular virus
Viruses.
REFERENCE 1 (bases 1 to 4668)
AUTHORS Lima,D.A., Cibulski,S.P., Finkler,F., Varela,A.P.M., Teixeira,T.F.,
Cerva,C., Domingues,G., Loiko,M., Scheffer,C.M., Santos,H.F.,
Mayer,F.Q. and Roehe,P.M.
TITLE Fecal virome of healthy chickens reveals a large diversity of the
eukaryote viral community, including novel circular single-stranded
DNA viruses
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4668)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2017) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4668)
AUTHORS Lima,D.A., Cibulski,S.P., Finkler,F., Varela,A.P.M., Teixeira,T.F.,
Cerva,C., Domingues,G., Loiko,M., Scheffer,C.M., Santos,H.F.,
Mayer,F.Q. and Roehe,P.M.
TITLE Direct Submission
JOURNAL Submitted (28-OCT-2016) Microbiologia, Parasitologia e Imunologia,
Universidade Federal do Rio Grande do Sul, Rua Sarmento Leite, 500,
Porto Alegre, Rio Grande do Sul 90035-190, Brazil
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KY056251.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4668
/organism="Chicken stool-associated circular virus"
/mol_type="genomic DNA"
/strain="RS/BR/2015"
/isolation_source="feces"
/host="Gallus gallus"
/db_xref="taxon:1930302"
/country="Brazil"
/collection_date="31-Jul-2015"
/collected_by="Diane Lima"
gene 64..1047
/locus_tag="BWS39_gp1"
/db_xref="GeneID:30855486"
CDS 64..1047
/locus_tag="BWS39_gp1"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_009337827.1"
/db_xref="GeneID:30855486"
/translation="MDNQKRVSISRVLLTWPQCDGTKEDLLEFLKSTRCYACSIVCKE
NHHETEGTHFHAVLKTERAIQCRFKAAMEMFTWNGHKADIEFLKTKRDVKRAIGYVMK
DGDYINDGINVEAHLKDRHEKKWTCQKILETDMKELVKEDVVHPNNFRNILQAQQIWK
LMQKPDDCEDVRGIWMWGPAGCGKSTYARQFGIDNGGYYEKAQNKWWDGYDGEPVVIL
NDLDTHTLNHYLKIWADKFACKGEVKGSTVWLKHKYFIVTSNYSIEDIVRMGCRPDTY
DLALEGALKRRFKVMEMTDDMEWFGVPKKKCPEQECGLGDLGLAMFGSGYE"
misc_feature 79..393
/locus_tag="BWS39_gp1"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature 463..>630
/locus_tag="BWS39_gp1"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl38936"
/db_xref="CDD:453896"
misc_feature 583..843
/locus_tag="BWS39_gp1"
/note="RNA helicase; Region: RNA_helicase; pfam00910"
/db_xref="CDD:425942"
gene 2284..3318
/locus_tag="BWS39_gp2"
/db_xref="GeneID:30855484"
CDS 2284..3318
/locus_tag="BWS39_gp2"
/codon_start=1
/product="hypothetical protein"
/protein_id="YP_009337828.1"
/db_xref="GeneID:30855484"
/translation="MSWNKYTKPLFLTCEDITSGPRVWIPPRGMAYSRVILMSNGTDR
PYPWYDNKLYEIKDEGEHVLLERVDEGRPIMLYRPRVIIDTSKHYQTMEKTNKTVYPL
VEEYNLLGTVPKTNVTITNDIKDEKWPDEDPDNPDEINRDFPPYGYSKVTTEIKWNGE
DFPIHWLEQKEYNLEKETDENGITIDEWWRETAIEGADNIYYCGLKMNVVIRISVSAI
NRESLDTFKFSLAGGEILQPGESGIFIQRTLDVDSSPVEYQITLVYNNTNEIKTVFKP
VSQTRHALLDFSDGYKIKIKAGHDKDMIEIQGDVTTLNIGSGLPEITCSLSAKMFSMI
FGNNWKPDDE"
gene complement(3737..4495)
/locus_tag="BWS39_gp3"
/db_xref="GeneID:30855485"
CDS complement(3737..4495)
/locus_tag="BWS39_gp3"
/codon_start=1
/product="capsid protein"
/protein_id="YP_009337829.1"
/db_xref="GeneID:30855485"
/translation="MAYASSYFRTRYASYRRAARGTRRWNSGSRRRAWGNARAARQQR
DACTVTISRLTNVSVPVAASQTSGTAFIAHWDSLRQSTYFPNYSSMYDQIKIDKIRVK
VTGTNAGASTDLVSPTVVLAFDRNGLDSAQLNSDGISLATGVQGVSTYSSAQSRQWSV
GNAFTMWQTIYPSTIMEKGQYIPTNSLSTSSTTANPAYVISDSTMPFKPVTLFGISTN
GTEVTSAQTFVFSVELEYTVTFRGMRKPEIQTGS"
ORIGIN
1 ctgtcacgga tatgcagtca tgtcagcctt tggcctataa tatcccaggg cgaaagtctg
61 acaatggata atcagaaacg tgtgagcata tctcgtgtct tgttgacatg gccacaatgt
121 gatggaacga aggaggatct actggaattc ttgaagtcga ccaggtgtta tgcttgttcg
181 attgtgtgca aggaaaatca tcatgagact gaggggacac actttcatgc agttctcaaa
241 acggaaagag caattcaatg tcgtttcaag gcagcgatgg aaatgttcac ttggaatgga
301 cataaagcgg atatcgaatt tctcaaaaca aagagggatg tcaagagggc gatcggatat
361 gtcatgaagg atggagacta catcaatgac gggatcaacg tcgaagctca tttgaaggat
421 cgtcatgaga aaaaatggac atgtcaaaag atcttggaga cagacatgaa ggaactcgtc
481 aaggaagatg tggtgcatcc aaacaatttc aggaacattc ttcaagcaca gcaaatctgg
541 aagttgatgc agaaaccgga tgactgtgag gatgtcagag gaatttggat gtggggtcct
601 gctggttgtg gaaagtcaac atatgcacgt cagtttggga tcgacaatgg tggatactat
661 gaaaaagctc aaaacaaatg gtgggatgga tatgatggtg aacctgttgt catcttgaat
721 gatctggata cacacactct caatcactat ctcaaaatat gggctgataa gttcgcttgc
781 aagggggaag tcaaagggtc aacagtctgg ctcaaacata aatactttat cgtcacttcg
841 aactattcga tcgaggacat tgtcagaatg ggttgtcgtc ctgatacata tgatctggct
901 cttgaagggg cattgaagcg tcgtttcaag gtcatggaga tgactgatga tatggagtgg
961 ttcggtgttc caaagaagaa gtgtccagaa caagagtgtg gattgggtga tttgggtctt
1021 gctatgtttg ggtctggtta cgagtaaatc ctttagcgtc atgcccttgt ctgttccgat
1081 acactatcgc tttcagaggc cggatcgtat acttctttag ccttccttca cctgactccg
1141 tcgtctcagg gtctaaagac caacctcctc cgcttgccgt ttctctatca caacgactgg
1201 cggttccaga cgcgaaatta tcaactctgg tgggctagct acgggctttg cgaaacaagt
1261 tctttgcgcc tctccacacg ctccacttcc ctcttacctc ctttgtcggc gctacttctc
1321 atccacttca gatcggctcc taaattcttt cggtgcatag ccctgcgaat ttttccgatc
1381 atcgttctct tcgatcccgg gaagagaagg tgaggggcta cacgcacgtg actactactt
1441 acgccctttg gttgttgcag actacactac ttacgcggcc accctgcagc cttgtgtttt
1501 gttggaatta gaacttcttg tttagtcgga aaaagttgga ttgctcatct ttgagatcct
1561 tggagtgaac atatcgatgg atacgaacct caagggggac aatagtatcc ggtctgaggt
1621 ctaacttatt ctcctgaaca tggtggaaat cataatcaag agaaaaagcg aattggcgtt
1681 ggatatgtgg gagatatcct gcaataccac tgaagaaata tgcagctcgg ttaagtgaag
1741 ttccgtccgc attggtgaga gttatattgt ttctgagatc gccggaaaga tggtatcggt
1801 accatataaa tcttccttca taattatgaa atagtcttcc caaatcgtcg ataacccaag
1861 agtcggatat tctgtagaga gctgggactc ggggcatgct gggaacgagt tgtcgagaca
1921 aaaattcaag ttctgctgag taggacttaa aatttccaat gagggaatag gggaggatgg
1981 tggaatcttc gaagacggtg gcactagaga ctgtatgggg acgtcctcga acaatggtgg
2041 ctcctgtgga agtggtaaca agtcgttgtg gtgcgtattc agaataactt gtgtcgaaat
2101 gactccgggg aacattgtat ttgacgtgga atcgtctgga gatttgatac gtggggagga
2161 aggggacctt tctgacatct cgtgtgaagg ttcttcgtgg agtgggaatc gaagacatca
2221 actggaaaaa ataaacgatg aaaataaatg acttcgagtg ctatttaaaa tctataattg
2281 aaaatgtcgt ggaataaata cacgaaacca ctatttctaa cgtgtgaaga cataacttcg
2341 ggacctagag tgtggattcc gccgagaggg atggcatata gtagggtgat actgatgtca
2401 aatgggacgg atagacctta cccttggtat gacaacaaat tatatgaaat aaaggatgag
2461 ggagaacacg tgttattgga aagagtggac gaaggacgac caataatgct atacaggcca
2521 agagtgataa tagacacatc aaaacactat caaacgatgg aaaaaacaaa caaaacagta
2581 taccccctgg tagaagaata caacctactg gggacggtgc ctaaaacgaa tgtgacgata
2641 acgaacgaca taaaagacga aaaatggccg gatgaagacc ctgataatcc agatgaaata
2701 aacagggact ttccgccata tggatattca aaagtgacga cggaaataaa atggaatggg
2761 gaagactttc caatacactg gttagaacaa aaagaataca atctggaaaa agagacggat
2821 gaaaacggaa taacaattga cgagtggtgg agggagactg caatagaggg tgcggacaat
2881 atatactact gtggactaaa aatgaacgtg gtaataagaa taagtgtgtc ggcaataaac
2941 agggaaagtt tagacacatt caaattcagc ttggcgggag gagaaattct acaacctgga
3001 gaatcgggaa tattcataca aaggacgtta gatgtggact cgagtccggt agaatatcaa
3061 ataacgctgg tatacaacaa cacaaacgaa ataaaaactg tattcaaacc agtgtcacaa
3121 acgagacatg cattgttgga tttcagcgat ggatacaaaa taaaaataaa agctgggcac
3181 gacaaggata tgatagaaat tcaaggggac gtaacgactc tgaatatagg gtctggactc
3241 cctgaaatca cgtgctcgct aagtgcaaaa atgttctcga tgatatttgg caataactgg
3301 aaaccggatg atgagtaaac gactaattta ctaatataga aattggaagt gggattttga
3361 gaaatagacg ttttctgcgc gttcattttt tgtgatatct tcctcgtaaa aagcaatgac
3421 ttcttcgaaa tgatctgaga agatggcgaa tcgatctaaa aaaccaacac cgacactggg
3481 catggccttg atataataat aagatccggg gggaatggag actgcaggtt gtgaatttgg
3541 attggcaaag aaggaaaaat gaaattcgtt cttgagagac tgaacgcaga aaagataagt
3601 gtgtggttca atgtcaagag aaagagctgt gtctgtatga gcaaattcga aaaaataaac
3661 cgtcgatcta tctgaaaact gaatataaga aagtatagta ggtgatctgc aaaaagtgtt
3721 aggttaataa atttacttac gatcctgttt gaatctcggg tttcctcatg cctctgaatg
3781 tgacggtgta ctccaattca acactgaaaa cgaatgtttg tgcagatgtg acttcggtgc
3841 cattagtaga aattccaaag agtgtgactg gcttaaatgg cattgtgcta tcggaaataa
3901 cataggccgg attggcggtg gttgaagaag ttgaaaggga attagttgga atatactgtc
3961 ccttctccat gatagtgctg ggataaattg tctgccacat tgtgaaagca ttgccgactg
4021 accactgtcg agattgtgcg ctagaatatg tggaaacgcc ttggactcca gtggcgaggg
4081 aaattccgtc agaattaagt tgtgcactat caagcccgtt acgatcgaaa gcaagcacga
4141 cggttggaga gacgaggtcg gttgaagctc cagcatttgt ccctgtgact ttaacacgaa
4201 tcttgtcaat cttaatttga tcatacatac tggaataatt gggaaaatag gtggattgcc
4261 gaagactgtc ccagtgagcg ataaaggcgg tgccggatgt ttgggaagca gcgacaggaa
4321 cggaaacgtt agtgaggcgt gatattgtca ctgtgcacgc gtctctttgt tgacgggctg
4381 ctctggcatt tccccatgct ctacgacggg atccggagtt ccatcgtcta gttcctctag
4441 ctgctcttct atatgacgca tatcgagttc tgaagtacga cgatgcatat gccatcctct
4501 aaaacaacag ttgcaggagt tcttgagtgg gaattccacg tcaaatctat gtcctgacat
4561 ctggaaagaa aaaagaggtt gatatggatg aaaataattg acgcggagga atttggttga
4621 cttttggaaa taattgttcc gtgcactcgt tttgttggaa ataagtga
//
