LOCUS       NC_033275               2464 bp    DNA     circular VRL 13-AUG-2018
DEFINITION  Chicken associated smacovirus strain RS/BR/2015/4, complete genome.
ACCESSION   NC_033275
VERSION     NC_033275.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Chicken associated smacovirus
  ORGANISM  Chicken associated smacovirus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus.
REFERENCE   1  (bases 1 to 2464)
  AUTHORS   Lima,D.A., Cibulski,S.P., Finkler,F., Varela,A.P.M., Teixeira,T.F.,
            Cerva,C., Domingues,G., Loiko,M., Scheffer,C.M., Santos,H.F.,
            Mayer,F.Q. and Roehe,P.M.
  TITLE     Fecal virome of healthy chickens reveals a large diversity of the
            eukaryote viral community, including novel circular single-stranded
            DNA viruses
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2464)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2464)
  AUTHORS   Lima,D.A., Cibulski,S.P., Finkler,F., Varela,A.P.M., Teixeira,T.F.,
            Cerva,C., Domingues,G., Loiko,M., Scheffer,C.M., Santos,H.F.,
            Mayer,F.Q. and Roehe,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2016) Microbiologia, Parasitologia e Imunologia,
            Universidade Federal do Rio Grande do Sul, Rua Sarmento Leite, 500,
            Porto Alegre, Rio Grande do Sul 90035-190, Brazil
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to KY086299.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2464
                     /organism="Chicken associated smacovirus"
                     /mol_type="genomic DNA"
                     /strain="RS/BR/2015/4"
                     /isolation_source="feces"
                     /host="Gallus gallus"
                     /db_xref="taxon:1932006"
                     /country="Brazil"
                     /collection_date="31-Jul-2015"
                     /collected_by="Diane Lima"
     gene            1..747
                     /locus_tag="BWS34_gp1"
                     /db_xref="GeneID:30855493"
     CDS             1..747
                     /locus_tag="BWS34_gp1"
                     /codon_start=1
                     /product="replication associated protein"
                     /protein_id="YP_009337832.1"
                     /db_xref="GeneID:30855493"
                     /translation="MTEPKWYDITISKAKCPEEILRKWLDENGERYAYGRERGEDGYE
                     HFQVRVVLRNPTSWATMREIWGHSGHCSPTSVRNFDYVLKEGDFVCSWIKVPDAIRNA
                     KLRPWQTALTDLKQNDREIDCIIDLCGNTGKSFVTKYMCMKNMAINIPSGLSGKDIMR
                     MCMKRAKLGTYIFDIPRAGSKQAKETWSAIESIKNGYLWDDRYTWEEMWIDSPRVFVF
                     TNEYPKYDLLSEDRFRFWAPGELGLIPLAK"
     gene            complement(1149..2096)
                     /locus_tag="BWS34_gp2"
                     /db_xref="GeneID:30855492"
     CDS             complement(1149..2096)
                     /locus_tag="BWS34_gp2"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="YP_009337833.1"
                     /db_xref="GeneID:30855492"
                     /translation="MKQSYTYFLDLATSPDKVQVIGVSAGGMECMRRLLPFFAAYKYY
                     KLGPVKLKVVPASTLPVDPTGLSYEAGESTVDPRDQFNPGLVRITNGEDIIVPENMDQ
                     YYSLMLDRRWYKFQLQSGFFRSAVPRVWRIAQLHQDRFPGNVQNJPSVRDPAREVYNR
                     QGLVTADNPPAVAYTPLDEGSDPRGFFQVGNNLRLDWLPTDSDNEWDPTPNVPKYGRP
                     AAVPEVPLMTFVLPQAYKTKFYYRVYVTETVYFKDPVALNVSSVANPGCSVMNNGVDR
                     FSGIPFMNYQNKGARLILDPPYKGYINDGSDYRKDTGGA"
ORIGIN      
        1 atgacagagc ctaaatggta cgatataacc atttctaagg cgaaatgtcc tgaagaaata
       61 ctacggaagt ggttagatga aaacggagaa agatatgctt acggaagaga acgaggagaa
      121 gacggatacg aacatttcca agtcagagtt gtattacgca atcctacaag ctgggcgaca
      181 atgcgggaaa tatgggggca tagtggtcat tgtagcccta ctagtgttag aaattttgac
      241 tatgttctaa aggagggtga ctttgtatgt tcgtggataa aagtaccaga tgctatccga
      301 aatgccaagc taagaccctg gcagactgct ttaacagatt taaaacagaa cgacagggag
      361 atcgactgta ttatagacct gtgtggaaac actggaaagt cgtttgttac gaagtatatg
      421 tgtatgaaga atatggcaat caatattcca tccggacttt ccgggaaaga tattatgcgc
      481 atgtgtatga agcgagcaaa gcttggtaca tacattttcg atatcccaag agcaggaagc
      541 aagcaagcaa aagaaacatg gtcagccatt gaaagcatca aaaatggata cctgtgggac
      601 gacaggtaca catgggagga aatgtggatc gacagtccaa gagtgtttgt ttttacaaat
      661 gagtatccaa agtacgacct gttgtcggaa gaccggttca ggttttgggc accgggcgag
      721 ctaggcctaa taccactcgc gaaataagcg caaggcttgg gcgctaccgc gtaatactcc
      781 cgccttgcgc cctaatatct tttattatat ttttttaagt ctcgggtttc atgggagcaa
      841 aatgtctgaa atccgacaaa atgtctgaaa ttagacacgt tagactgggg tgcgggtata
      901 ggggttcgct ccgctacgct ccgctcacag ggggtgtgat aggatcagac aagggacaac
      961 agacaacaga aaaagtaaga aagggtttgg gaaagggttt agagggactc agacccgaca
     1021 tccacaggag ggagatggtt gtcagggtta gagtattcct cttcatcttc tttagtccag
     1081 acttcatcct cgaagaccat aaggcagcct ggtaccagac gacgaccatt cagataaaca
     1141 gaggccattt aagcaccacc agtgtccttc cgataatcgg atccatcgtt tatataacct
     1201 ttgtaaggag gatcaaggat gagcctagca cccttattct ggtaattcat aaagggaata
     1261 ccagagaatc tgtccacacc gttattcatg actgaacagc caggattagc gactgaagag
     1321 acattgagag ctactggatc tttgaagtat acagtctcag tgacatagac acggtagtag
     1381 aacttagtct tgtaagcttg aggtagtaca aaggtcatta aaggaacctc tggaactgca
     1441 gctggtctac cgtatttagg gacattagga gtaggatccc attcattatc ggagtcagta
     1501 gggagccagt ctaagcggag attattaccg acctggaaaa agcctctagg atcagagcct
     1561 tcatctaagg gggtataagc aacagctggc ggattgtctg cggtaaccag tccctgacga
     1621 ttgtaaactt ctctcgcagg atcacgcaca gatgggakgt tctgaacgtt acctgggaaa
     1681 cggtcttggt gtaactgtgc aattctccag acccgtggaa cagcactacg gaaaaagcca
     1741 gactggagct ggaacttata ccaacgtcta tctaacatta atgagtagta ttgatccatg
     1801 ttttctggaa ctatgatgtc ctcaccattg gtaatccgca ccaaaccagg attaaattgg
     1861 tctctggggt ctacggtact ctcacctgct tcataactga gtccagttgg gtctacaggt
     1921 agagtgctag ccggaacgac cttaagcttg acagggccga gcttgtagta tttgtacgct
     1981 gcaaagaaag gtaatagtct ccgcatgcat tccataccgc cagctgaaac gccaatgacc
     2041 tgaaccttat caggcgaggt agcgaggtca agaaaatagg tataactttg cttcatagtt
     2101 tcgtcacatc ctttgttgat ctaccaacac gtccagcaac agatgtacca aacgaaagag
     2161 cagaatcata taattgacca gcttgtctgt acatctgagc ctcgtatcct tgggttgcat
     2221 acttataggt acggccagta ttacgtttgt agtctttagc catgtaaccg tagtccttca
     2281 tgcggtcata ttcgtaaatg aaacgtcctg caataggtaa agcgtacaat ccagtctgat
     2341 atgccatgtt tagtatctcc tgcgtctgta gtatctgcgc ctgccgtaga atcgcctacg
     2401 agggtaataa gagcgtctgt aataagacat agactctaaa taagggtagg agtacttaag
     2461 gctt
//