LOCUS NC_034215 5956 bp RNA linear VRL 13-AUG-2018
DEFINITION Peach rosette mosaic virus isolate PRMV2 segment RNA2, complete
sequence.
ACCESSION NC_034215
VERSION NC_034215.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Peach rosette mosaic virus
ORGANISM Peach rosette mosaic virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus
persicae.
REFERENCE 1 (bases 1 to 5956)
AUTHORS Ho,T. and Tzanetakis,I.E.
TITLE Development of a virus detection and discovery pipeline using next
generation sequencing
JOURNAL Virology 471-473, 54-60 (2014)
PUBMED 25461531
REFERENCE 2 (bases 1 to 5956)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2017) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5956)
AUTHORS Ho,T. and Tzanetakis,I.E.
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2017) Department of Plant Pathology, University
of Arkansas, 495 N Campus Dr, PTSC 217, Fayetteville, AR 72701, USA
REMARK Nucleotide and amino acid sequences updated by submitter
REFERENCE 4 (bases 1 to 5956)
AUTHORS Ho,T. and Tzanetakis,I.E.
TITLE Direct Submission
JOURNAL Submitted (13-MAR-2014) Department of Plant Pathology, University
of Arkansas, 495 N Campus Dr, PTSC 217, Fayetteville, AR 72701, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KJ572573.
##Assembly-Data-START##
Assembly Method :: Velvet v. 1.2.10; Newbler v. 2.8
Sequencing Technology :: 454; Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..5956
/organism="Peach rosette mosaic virus"
/mol_type="genomic RNA"
/isolate="PRMV2"
/host="grape"
/db_xref="taxon:65068"
/segment="RNA 2"
/country="USA"
/collection_date="02-Aug-2011"
5'UTR 1..47
gene 48..4472
/locus_tag="B5P31_s2gp1"
/db_xref="GeneID:37246054"
CDS 48..4472
/locus_tag="B5P31_s2gp1"
/note="RNA2_gp1"
/codon_start=1
/product="polyprotein"
/protein_id="YP_009351879.1"
/db_xref="GeneID:37246054"
/translation="MLPLHERMILVRQDLEKMGVPEMGILQVLSAMGDYAAFVAATDE
EKEKISARQRAVKLPISLSSYSERYAKCMAGIVETAIVRASTKSGPTRFLFQRRVGRA
IWALTTGVLKYALRWGITLALALEKGSTWIPICSEGPYASLGCSNTPISLAPSKVQDK
IPVVQQQVALAPPMGLNLEVQPQVAGEHDTQVVCSFPGHTLEPGCQCSFCAVPEAQLK
LSVQQGVAGELDTQLENLPVQQEVAGELDTQNSNLLVQQEVAGEPDTYILHGLSVGHF
PCSYTCGCSLYTSPFEEYYLNFFCGPFENPRFYEVPIGPLTFGATTLAQHFLSHDCDS
SFRSYSPIGGLLFSSIEERSLGSWPKAAFSFDDALLLKGSVNFNYLNSDPLPMLDREF
NSLFLALDSLSESEQPSQGHWPCGGVNSFKSSFTPRFKRGEENYCLPKMPPRILKKEA
INSLSGHFSFCECARCIPRCVDNTHAYLCGKATLYAHECWICPILALSKVAKQERKER
AKFEALAKHLDELDFCDQLNSIDKAAMKLETAATPKQTYGGLFSGVAKHIPSKVSLVD
VATFIAAPAFAFIHSERESEERAADLEDHAANVHSEHGSLTIAQSITNLRKKKRKNKK
GQILEYGEGRLADRNTKILEKDVFVRVAHGGWADKAQKWLGSNSAGILTQQTFPTRAE
TVYMPSDIRQCIHTPLPQFTENQLRHLLDVQDMKSSGITAIDLAIQSHAGEGIPLSAF
CTIMDGDNGDPNMAALSGSKFDLGRDRCQVITLPLVNVNLNNLHKQVNEDNKTRLYLA
TLFNNSCGIYPNAPVFQYGTSQLLEHRPDAYTNATLCKDEWHDIERRNAKKGCRILKG
FNVEEHIAQDYDQELLPFSEGSLLTCRTTERSAPTHAFSAAGVVKNAESSRLQRSCSV
RFLNDSSSRSRNPSQFGGLAMGSAKHDPKPNNTIPGEAPRHSTCMSAPDNPFIVACTS
VVKVPKDAKEGHYLGTIDFYALLAKQRKAPYLNWCGKGLIAPEIIFRFFSGSNSFVGT
TIGVVHDFFNRLDVKTTLGGKLPRQLANCMPLSLHPLCEGGISEQSVNIRQYAGHALY
AKSKGFCDPKFHIFIYDDNALEMSAAWRLTVELLMKEDVEVEEVGETPFLRVSDSHLD
YINLDLYKGFGTIPLTDDPALAPLGLDFAMQREYTDGKYCLGTTQAMYRQVLGAGGLL
EGRLRKVGTAMVSCILRLVMWWDLELPTLEETSEFPHIDIDLQDPKQGDFSILMRSPF
ARVPNRETRGRLLMYPIGGPIAATGVNSPFNFVIYIKGIRPLQRVPIISLANAWYSWM
QIDTFSKGHIELTIPNHVCDVKFTGAEARLRTNPLSVLFGTCGFFSGHIKMRFEWAQT
GKITDGGTVIWLGKMYGTMADREVLESVTNNTYSPGLAEFVIDVADFSGYNIPGGSKQ
KTQFIVIWIDNGEVIHNIRVSVQLQSDFSFYGRSCLLT"
misc_feature 2952..3227
/locus_tag="B5P31_s2gp1"
/note="Nepovirus coat protein, N-terminal domain; Region:
Nepo_coat_N; pfam03689"
/db_xref="CDD:397651"
misc_feature 3996..4457
/locus_tag="B5P31_s2gp1"
/note="Nepovirus coat protein, C-terminal domain; Region:
Nepo_coat_C; pfam03688"
/db_xref="CDD:397650"
3'UTR 4473..5956
ORIGIN
1 ggaaaaaacc aaagttgttt tcctttgact gccttttgtt ttccaaaatg ctaccattac
61 atgaacgcat gatcctggtt cgccaggatc tggagaaaat gggagtccca gaaatgggaa
121 tcctgcaagt cctctctgcc atgggggact atgctgcctt cgtcgctgcc accgacgaag
181 agaaggaaaa gatctctgct aggcagagag cagtgaaatt gccaatttca ctgtcttctt
241 attctgagcg ctatgctaaa tgcatggccg gaattgttga gaccgccatt gtgcgagcct
301 caaccaagag tgggccaact cgtttcctct ttcagaggag agttggtagg gctatctggg
361 cccttaccac tggggtgctt aaatatgcac tccgatgggg cattactctt gccctagctc
421 tagaaaaggg atccacttgg atccctattt gttctgaggg accctatgcg tccctggggt
481 gcagcaacac ccccatttcc cttgcaccct ctaaggtgca agacaaaatc cctgttgttc
541 aacagcaggt ggccttggct cctcctatgg ggctaaatct tgaggttcaa cctcaagttg
601 ctggtgagca tgatacacaa gttgtgtgct ctttccctgg gcacactttg gagcctggtt
661 gccagtgttc cttttgtgcc gttcctgagg cacaattaaa gctctctgtt caacagggag
721 tagctgggga gcttgatacc caacttgaaa atcttcctgt gcaacaggaa gtagctgggg
781 agcttgatac ccaaaactca aatcttcttg tgcaacaaga agtggctggg gagccagata
841 cctatatttt gcatggtctt tcagtaggcc attttccttg cagctacact tgtggctgtt
901 ctctctatac ttctcctttt gaggagtatt atttaaattt cttttgtggg ccttttgaaa
961 acccacgttt ttatgaggtt ccaattggac ctcttacttt tggtgccact actttggcac
1021 aacatttttt gagtcatgat tgtgactctt cttttagaag ctattcacca attggtggac
1081 tgcttttctc ctctattgag gagagatctt tgggttcgtg gcccaaagct gcattttctt
1141 ttgacgatgc cctactttta aaagggtccg tcaattttaa ttacttaaat agtgatccac
1201 tccctatgtt agatagggag tttaattctt tattcttagc tcttgactca cttagtgagt
1261 ctgagcaacc atcgcagggc cattggccat gtggtggtgt gaatagtttc aagtcctcct
1321 tcactccgcg ttttaaaagg ggtgaggaga attattgttt gccaaagatg cctcctcgta
1381 ttttaaagaa ggaagcaatc aattctttgt ctggacattt ctctttttgt gaatgtgcca
1441 gatgcattcc tcggtgtgtg gataacacac atgcatatct gtgtggcaaa gccacactat
1501 atgcccatga gtgttggatc tgcccaattc ttgctctgtc aaaagtggca aagcaggaga
1561 ggaaagagag agctaaattt gaagctctcg caaaacactt agatgagttg gatttttgcg
1621 accaactcaa ttccattgat aaagctgcta tgaaattgga aactgcagcc acccctaaac
1681 agacttacgg cggtttgttt agtggtgtag caaaacacat tccatcaaag gtctctttgg
1741 tggatgtagc cacatttatt gccgcacctg cttttgcgtt cattcatagt gaacgcgaga
1801 gcgaggagag ggcagctgat cttgaggatc atgctgctaa tgtacatagt gagcatggct
1861 cactaacgat tgcgcagagt atcaccaacc tgcgcaagaa gaaaaggaaa aataaaaaag
1921 gccagattct tgagtatggt gagggtcgct tagctgaccg gaataccaag atcctggaaa
1981 aggatgtctt tgtgcgtgtt gcacatggtg gctgggctga taaagctcaa aaatggttag
2041 ggagtaattc tgctggaatt ttaacgcagc agactttccc tacacgggct gagactgttt
2101 acatgcccag tgacattagg cagtgcattc atactccact gccgcaattt actgagaatc
2161 agcttaggca tttgctggac gtgcaagaca tgaagagcag tggtataact gctatagatc
2221 ttgccatcca gtctcatgct ggtgagggta tccctctttc cgccttctgc acaattatgg
2281 atggcgacaa tggggaccca aatatggcag cactctctgg atccaaattt gatttgggtc
2341 gggaccggtg ccaggtgata actctgccac ttgtgaatgt aaatcttaac aatttacaca
2401 agcaggtgaa tgaggataat aagacaaggt tgtatcttgc aactttgttt aataattcct
2461 gtgggattta tcccaatgca ccggtgttcc aatatggcac cagccaattg cttgagcatc
2521 gcccggatgc ttacacgaat gccactctct gcaaagatga gtggcatgat attgagcggc
2581 gaaacgccaa gaagggctgt cgtatcctga agggcttcaa tgttgaagaa catatagccc
2641 aggattatga ccaagagctc cttcctttta gtgaaggatc tcttcttact tgtaggacca
2701 cagagaggtc tgcccccacc catgcttttt ccgcagctgg agtggttaaa aatgcggaat
2761 catcgcgctt gcagcgctct tgttctgtca gatttttgaa tgacagttca agtagaagta
2821 gaaatccctc ccaatttgga gggttggcta tggggagtgc aaagcacgac ccaaaaccaa
2881 ataatactat acctggagaa gcacccaggc actcaacttg catgagtgca cccgacaatc
2941 catttattgt tgcgtgtact agtgtggtta aagtgcccaa ggatgccaaa gagggccatt
3001 atcttgggac aattgatttc tatgccttac ttgcgaagca acgtaaggca ccatacctta
3061 attggtgtgg taagggatta attgccccag agataatttt ccgttttttc tctgggtcta
3121 attctttcgt gggcaccaca ataggtgttg ttcacgattt ttttaataga ttagatgtta
3181 agaccacatt aggtggtaaa cttcctagac aattggctaa ttgtatgcca ttgtctttgc
3241 atcccctttg tgaaggcggt atatcagagc aaagtgtaaa tatccggcaa tatgctgggc
3301 atgctctata tgctaaatcc aagggatttt gtgatccaaa gtttcacatt ttcatttatg
3361 acgataatgc tctggagatg agtgccgctt ggcgcttgac tgtggagctt ctcatgaagg
3421 aggatgtgga agtggaggaa gtgggagaga cgcctttttt gagagtgtct gattcccatt
3481 tagattatat aaatttagat ttatataagg gttttggtac tataccttta accgatgacc
3541 ctgcgttagc accattgggc cttgactttg ctatgcagcg tgagtacaca gatggtaaat
3601 actgtttggg tactacacaa gcaatgtatc gccaagtcct tggagcgggc ggtcttctag
3661 agggccgctt acgcaaggta ggcaccgcta tggtgagctg tattttacgg cttgtcatgt
3721 ggtgggattt ggaattgcca acccttgagg aaacttctga atttcctcat atagatatag
3781 atttacaaga tcccaagcag ggagatttca gcattttaat gagatctcct tttgctaggg
3841 ttcctaatag agaaacccgg gggagattat taatgtaccc cattggtggc ccaattgctg
3901 ccactggagt aaactctccc tttaattttg ttatttatat aaagggaatt cgaccattac
3961 aacgagttcc tattatttct ttggccaacg cttggtatag ttggatgcag attgatacct
4021 tttctaaggg tcatattgag ctgactatac caaatcatgt gtgcgatgta aaatttacag
4081 gggctgaagc gcggttgcgc acaaatcccc tgtccgtttt atttggcaca tgtggtttct
4141 tttctggcca cattaagatg cgctttgaat gggcgcagac aggcaagatc acagatggtg
4201 gtaccgtgat ctggcttgga aaaatgtatg gtaccatggc cgatcgggag gtcctcgagt
4261 cggtcactaa taatacttac tcccctggac tagcagaatt tgtcattgat gtggcagatt
4321 tttctggtta taatatacca gggggatcta agcagaagac tcaattcata gttatatgga
4381 ttgataatgg tgaggtgata cacaatatac gtgtgtcagt tcagctgcag agtgacttta
4441 gcttttatgg gcggagttgc ctgttgacct aatggtcatt accccaagcg cagggggtct
4501 caaagcgcca gtttctagtc ctgtaggcta gaggttttgt gggcctaacc cacatccaag
4561 aggttgtcat caattagcat tttacctacg ggttgaagat gtgaatggaa gagtaatgcc
4621 cttccagacc tctcctttgg agaaccatga gtctacacat ggtcttggag gtcacagtcc
4681 cgattctgac tgtgtgcttt taccaatttc aaagaaaatg gaggagtagg agatgctctt
4741 acgtggtgag tgtatagatg cctccatgct gctcattaca acacattgat gaattcatta
4801 atagtcgtgt gtttgtggtg gcatgttggg tatgttcgtt tatacatgat ctgaaaatct
4861 caaatgacta gggagaaaga tcccataggt gtgcaaatca cctgcttcgt tggagagcca
4921 attccaattg ctttgctacc ttcaagaaag gagatagttc tggtgaaatt ccagtcgtta
4981 tgtttattgc tttttagggc ttgagtcttg tagttttgca attttgcaga gttgcgttag
5041 taaatctgca cgtgaggtgc accaacgtaa tggtgtaata gtgtgttgtg tctcccacac
5101 gataagtaat gagacaacgc tgggttagat cccggggagg gtggttcctc ctgtcaacat
5161 ttgtgcttta gtagataagc acccttttct tccagtctta ctgagacagg atatcaaaag
5221 taggcttgca gataatagat tcttggttaa ctgatataga tttgagtaat tgtaagaact
5281 atccataatt tgtcttggat tgtttaatac tctcatctct attggctctt tccatgagta
5341 ctactgcgac accgctggcg tattctagtt ttaaagacgg tatgctgttt ccggcatata
5401 aaagtggata tagtagctgt aagcatagtg gttaaatcaa attcaccgat gcgtcggagg
5461 agccactatg tgtacaatag ggggaagccc ctatggcgaa ttatctatat aggaaccctt
5521 tgctggggtt aaaagcttaa ggtttagtgt aacgcaacaa tgggtgtact caagagcgtg
5581 tagggtggca cctacatgct tggatgaggg ccggagatga acaccggggg ataatcaatc
5641 ccagcccagg cactaggctg actttcgtgg aagtgtccac gacgcatttt aaggtaggtt
5701 ttagacataa cctcccggga tggaagtgat taccatttcg ttatttgtta ttagtttctt
5761 gcaactatga tgaggggacc acattttaag cgatgttgct gcattgcaaa cctatggtta
5821 tctgattagt tgtcgtattt tcttttagct ttttgtggcg atagatgagg tttgtccttt
5881 tccttgtctt gctaagttgg acacaaaaat atattttctt ttgtttcaat agagtcgatg
5941 aaaatgtctt catcac
//
