LOCUS NC_034404 3570 bp ss-RNA linear VRL 13-AUG-2018
DEFINITION Jeju virus strain 10-11 glycoprotein precursor, gene, complete cds.
ACCESSION NC_034404
VERSION NC_034404.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Jeju virus
ORGANISM Jeju virus
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Ellioviricetes; Bunyavirales; Hantaviridae;
Mammantavirinae; Orthohantavirus; Orthohantavirus jejuense.
REFERENCE 1 (bases 1 to 3570)
AUTHORS Arai,S., Gu,S.H., Baek,L.J., Tabara,K., Bennett,S.N., Oh,H.S.,
Takada,N., Kang,H.J., Tanaka-Taya,K., Morikawa,S., Okabe,N.,
Yanagihara,R. and Song,J.W.
TITLE Divergent ancestral lineages of newfound hantaviruses harbored by
phylogenetically related crocidurine shrew species in Korea
JOURNAL Virology 424 (2), 99-105 (2012)
PUBMED 22230701
REFERENCE 2 (bases 1 to 3570)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (26-JUN-2017) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3570)
AUTHORS Gu,S.H., Baek,L.J., Yanagihara,R. and Song,J.-W.
TITLE Direct Submission
JOURNAL Submitted (28-DEC-2010) Department of Microbiology, College of
Medicine, Korea University, 5-ga, Anam-dong, Sungbuk-gu, Seoul
136-705, Korea
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to HQ834696.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3570
/organism="Jeju virus"
/mol_type="genomic RNA"
/strain="10-11"
/isolation_source="lung tissue"
/host="Crocidura shantungensis"
/db_xref="taxon:990280"
/segment="M"
/country="South Korea"
/collection_date="29-Apr-2010"
gene 39..3470
/locus_tag="CAB97_sMgp1"
/db_xref="GeneID:32305893"
CDS 39..3470
/locus_tag="CAB97_sMgp1"
/codon_start=1
/product="glycoprotein precursor"
/protein_id="YP_009361850.1"
/db_xref="GeneID:32305893"
/translation="MRADRLSKYCLIIFLLVLVKDVKLRNVYELLLECPLAANYHMGE
ITLHGSVVLPPINVQDVSTLEIESSCSMDVHNSGKTAHSLTELTWNKKADHSGNAAES
SFEFKSAEKSLKGICKITHKTVEQAYKLHKSVICYDLICNQTMCKPELHFLSQMWACT
SMRSCVIAVGPHRVQVTFKKTFCSTGVVVEGRCFRPDRTTTLNKRSTFIEYTTLPLHC
FLVQHNNEKQKLVAELEKLKTDGCTSNTHAFQGYYLCVTGGSTELIKVPTSDDERSQA
ILKAIFKAPYGEDHDNMDEPFGAIRIAGSGNGKVPSTETADNIKGVAFSGTPMYSSLS
VFTKKQEGDLAFSPGILINYNHTGCDSKALPLVWSGYTTIPGVFESINQCSVFCVLSG
PGASCDAFAEGGIYNLTSPTCLVSKHTFIKSTEQQVTFVCQRLDTDIIVYCNGQKKTI
LTRTLVIGQCIYTLTSIFSLLPSVAHSIAIELCVPGFHGWATIALIITFCFGWLLIPS
ITWLILFILKFSVRMVRSYTEENSFKTLLRRIRDEYERTKGSMVCDVCKTECETQKEL
KSHQISCSKEQCPYCFTHCEPSEIAFQAHYKVCQVTNRFSDDLKKTITQGPMRPGCYR
TLNLFRYRSRCYIFTVWMTLLIIESILWAASAEPDPLKPNWVDTAHGIGHYVMLTDLE
LDFSLLSSSQYTYRRKLVSASNPDDSTVLHIEIDAQLITAEIQPLGHWYDAMLNVKTS
FHCYGACNKYTYPWQSTKCFVERDFQYESSWGCNPVDCPGIGTGCTACGLYLDKFKPV
GTAYKIVNLRYTRHVCVQFSDETMCKVIESNDCFIAKNFKICLIGTVTKFQNGDTLLF
LGPLEAGGIILKQWCTTNCQYGDPGDIMLGINQQYSCPDYIGAMRKRCVFGHTPVCEY
NGNLISGYRKLIATIDSFQSFNVSNIHISQSSLEWADPDGLLKDHINVLVNRDINFED
LAENPCRIQVQTINIEGAWGSGVGFTVKCIVSLTECPTFLTSIKACDAAICYGAASVK
LIRGQNTVRVTGKGGHSGSKFRCCHEENCSPTGLLAAAPHLDRVSGVDALSEEKVFDD
GAPSCKVKCWLVKTGEWLRGLLSGNWMVVIVLVVTLFISIVCMTIFCPVRKIKRG"
misc_feature 111..1688
/locus_tag="CAB97_sMgp1"
/note="Hantavirus glycoprotein G1; Region: Hanta_G1;
pfam01567"
/db_xref="CDD:279853"
misc_feature 1887..1994
/locus_tag="CAB97_sMgp1"
/note="Immunoreceptor tyrosine-based activation motif;
Region: ITAM_Cys-rich; pfam10538"
/db_xref="CDD:431345"
misc_feature 2016..3365
/locus_tag="CAB97_sMgp1"
/note="Hantavirus glycoprotein G2; Region: Hanta_G2;
pfam01561"
/db_xref="CDD:426324"
ORIGIN
1 tagtagtaga ctccgcaaaa agaagtacaa aagaaaaaat gagagctgat aggttatcaa
61 agtattgcct gatcatattt ctattagtgc ttgtgaagga tgtaaaattg agaaatgtct
121 atgagctatt actggagtgc cccttagcag caaattatca catgggagaa ataacattac
181 atggatctgt tgtactacca ccaatcaatg tacaagatgt aagcaccctt gaaatagaaa
241 gttcatgtag tatggatgtg cataattctg gcaaaactgc ccatagtctc acagagctta
301 catggaacaa aaaggctgat cacagtggga atgctgcaga gagttcattt gagttcaaat
361 ctgcagaaaa atctttaaag ggaatatgca aaattaccca caagactgta gaacaggctt
421 ataaactgca taaatcggta atatgctatg acctaatctg taaccagaca atgtgcaagc
481 cagaacttca tttccttagc cagatgtggg catgcacatc tatgagaagc tgtgttattg
541 cagtaggtcc ccatagggta caggtgacat tcaaaaaaac attctgttct acaggggtag
601 tagtagaagg acgttgcttt agaccagatc gtacaactac actcaacaag cgatcaacat
661 tcatagagta tacaacattg ccattgcatt gtttccttgt gcaacataat aatgaaaagc
721 aaaaattagt tgcagagttg gagaagttaa agactgatgg ctgtacctca aacacacatg
781 catttcaagg ctattattta tgtgtcactg gtggctcaac agaactaatc aaagtcccaa
841 caagtgatga tgagagatca caagctatcc taaaggccat tttcaaggca ccatatggtg
901 aggatcatga taatatggat gaaccatttg gtgcaatcag aattgcaggt tctggtaatg
961 ggaaagtacc ttcaacagaa acagctgata atataaaggg tgtagcattt tcagggaccc
1021 caatgtactc ttcattaagt gtcttcacaa aaaaacaaga aggtgaccta gcatttagtc
1081 caggaatttt aataaactac aatcatactg gatgtgacag taaagctcta ccattagtat
1141 ggtcgggcta cacaactatc cctggtgttt tcgaatcaat taaccaatgt tcagtctttt
1201 gtgttttatc tggacctgga gcctcttgtg atgcatttgc tgaaggaggc atttacaatc
1261 tgacttcccc aacttgtcta gtatccaagc atacttttat taagagtaca gagcagcaag
1321 ttacatttgt ctgccaaagg ttagatacag acatcatagt ttattgtaat ggccagaaga
1381 agactattct gactaggact ctagttattg gtcaatgtat ttacacactt acaagcatat
1441 tttccctttt gccaagtgtt gcacattcaa ttgcaatcga gttgtgtgtt cctggctttc
1501 atgggtgggc aactattgca ttaattataa cattctgttt tgggtggctt ctaataccaa
1561 gtataacatg gttaatcctt tttattctaa aattttctgt tcgaatggtg agaagttata
1621 ctgaagaaaa tagtttcaaa acattattac gtcggataag ggatgaatat gagagaacaa
1681 aaggttcaat ggtatgtgat gtatgtaaaa ctgaatgcga aacccaaaaa gaattaaagt
1741 cacatcagat ttcctgttct aaggagcaat gcccatattg ttttacccat tgtgaaccat
1801 cagagattgc atttcaagcc cactataaag tgtgccaagt tacaaaccgg ttctctgatg
1861 acttgaaaaa gactataact caagggccaa tgagaccagg gtgctataga acattaaact
1921 tattcaggta tcgtagtaga tgttatatct ttactgtttg gatgacacta ttgataatag
1981 aatctatatt gtgggcagca agtgctgagc ctgatccact aaaaccaaac tgggttgata
2041 cagcccatgg tataggacat tatgtaatgc ttactgattt agaattggat ttctcactgt
2101 tgtcaagctc tcaatacaca tatagaagaa agttagtgag tgcttcaaat cctgatgatt
2161 ctacagtcct tcatatagag atagatgctc aacttataac tgcagaaata caacctttag
2221 ggcactggta tgatgcaatg cttaatgtca aaacatcatt tcattgttat ggtgcatgta
2281 ataaatatac atatccttgg cagtctacaa aatgctttgt tgaaagagat ttccagtatg
2341 aaagtagctg gggctgtaac ccagtagatt gtcctgggat cgggacaggc tgcactgctt
2401 gcggtctata tttagataag tttaagccag taggcactgc ttataaaatt gttaatttaa
2461 gatatacaag gcatgtctgt gttcaattta gtgatgaaac aatgtgtaaa gttatagaat
2521 ctaatgattg ctttatagct aaaaacttta agatctgcct aattgggaca gtcacaaaat
2581 ttcaaaatgg tgatacattg ttgtttcttg ggcctttaga agcaggtggc attatactta
2641 aacagtggtg cactacaaat tgccaatatg gtgatcctgg tgatattatg ttaggtataa
2701 atcagcagta cagctgtcct gactacatag gggcaatgag aaaacgttgt gtttttggcc
2761 atacaccagt gtgcgaatat aatggtaatt taatttctgg ttatagaaag ttaattgcaa
2821 caattgattc atttcagtca tttaatgtaa gtaatattca tatcagtcag agttctttag
2881 aatgggcaga cccagatggc ttattaaagg accatatcaa tgtattagtt aatagggata
2941 taaattttga agacttagca gagaatccat gtagaataca agttcagaca atcaatattg
3001 aaggtgcttg gggttcaggt gtaggtttta cagttaaatg tatagtatca ttaacagagt
3061 gtcccacgtt tctaacatca attaaagctt gtgatgcagc catttgctat ggagcagcta
3121 gtgtgaagct tataagagga cagaacacag ttagagttac aggaaaaggg ggccatagtg
3181 gttctaagtt tcgttgctgt catgaggaaa attgttcacc tactgggctt cttgcagctg
3241 caccacactt agatagagtt tcaggagttg atgcattaag tgaagaaaaa gtatttgatg
3301 atggtgcacc ttcctgtaaa gttaaatgtt ggcttgtcaa aacaggggag tggcttaggg
3361 gccttttatc aggtaattgg atggtagtga ttgtcttagt tgtaacactg tttatttcaa
3421 tagtctgtat gactattttt tgccctgtga gaaagattaa acgaggttag gtggtaatct
3481 taaatgctaa aaaaaatgat ctctttccac ttgtaaaaat tagttgttct ggctctggga
3541 cacctattct ttttgcggag tctactacta
//
