LOCUS NC_034494 4434 bp ss-RNA linear VRL 10-DEC-2021
DEFINITION Farallon virus isolate CalAr846 segment M cRNA sequence.
ACCESSION NC_034494
VERSION NC_034494.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Farallon virus
ORGANISM Farallon virus
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Ellioviricetes; Bunyavirales; Nairoviridae;
Orthonairovirus; Orthonairovirus bushkeyense.
REFERENCE 1 (bases 1 to 4434)
AUTHORS Walker,P.J., Widen,S.G., Wood,T.G., Guzman,H., Tesh,R.B. and
Vasilakis,N.
TITLE A Global Genomic Characterization of Nairoviruses Identifies Nine
Discrete Genogroups with Distinctive Structural Characteristics and
Host-Vector Associations
JOURNAL Am J Trop Med Hyg 94 (5), 1107-1122 (2016)
PUBMED 26903607
REFERENCE 2 (bases 1 to 4434)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2017) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4434)
AUTHORS Walker,P.J., Widen,S.G., Wood,T.G., Guzman,H., Tesh,R.B. and
Vasilakis,N.
TITLE Direct Submission
JOURNAL Submitted (22-DEC-2015) Biochemistry and Molecular Biology,
University of Texas Medical Branch, 301 University Blvd, Galveston,
TX 77555-1079, USA
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence is identical to KU343155.
Annotation based on that found in PMID: 26903607.
##Assembly-Data-START##
Assembly Method :: ABySS v. 1.3.5
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4434
/organism="Farallon virus"
/mol_type="genomic RNA"
/isolate="CalAr846"
/host="Ornithodoros sp."
/db_xref="taxon:248053"
/segment="M"
/country="USA: South Farallon Island, CA"
/collection_date="Jul-1965"
gene 75..4193
/locus_tag="CAU96_sMgp1"
/db_xref="GeneID:69042405"
CDS 75..4193
/locus_tag="CAU96_sMgp1"
/codon_start=1
/product="glycoprotein precursor"
/protein_id="YP_010229113.1"
/db_xref="GeneID:69042405"
/translation="MKGTLVFGTTMCLIVVTFYMLLWLSAQPVTAYGTYYTPGNWRDN
HGLSVNSYDDYIFSNFLDQVGATSTGVHGGTQKLVPLENRTLVVTIENAENITSKLAP
LQTRLVQSFLSTQNDSLSSTLQDLIKKFTLTTYNSLFETEVDELDKLLAQEDTYSFIP
RSNISGNLVSIRITTNRTSKMVIKPTLGALQAKGTDEYLVCTENSWEESVEDVYPTVY
AQRNCQTIGACCRGKEHNMDAEDLNFVNLYTTSPKGSEYIFINYHTSHLSFYVSNCEL
VIDVAGCVLHTYLAEKTNYQMMAGNVTFPVAHVIIPKVEKNRECVLTLCGITKGERVP
GVGWKMVEHVVHVHPFWNEKRRESQSISRRKLLSMDPVAVQGYKWPMRCNTKNQMIPF
KRSMLHHHLRSVAGRKIVYCNSSIITDQPLSSLHGCYQVADKRSYFQCPGLAANAKSQ
KEKVNCTVEQAIQRCEKAYCLQLRMNGTGLVTVKGRNWSKTQRCDNKCLISLEKKEDV
QIVCPDGTVHKLIQNTVDINCPFKEKFGGVTLYICRATNRPRLFYFWVLWIILGFPML
FLVFSVSRFLTLLSSKVVICFKRKLDRKKGKCMHCGCYVNSVYEWQRHYECKVGECPF
CRKRYSVLGLQQHAPTCLDMKSVITKDEDIVNEILLPKPLLLLGTILSKARKGTSKFM
WIIVMITVLIFLVQPVNSIENVHLQPGEWEEEINEVSICTDDCIFLEDHCVCPGKEHK
RYKRELLSERMKDVSALYQADVQAPWGNVHIDGTFKPKYSEKSIKMSWSSAEYDELGK
LKLNGRAEALLKLEPKSGVTFELSSEKSLEKRMLTINLIDFTQVYKTRFEYITGDRKL
GNWMHGTCSGDCPNKCGCDTPTCLNTKWINSRNWHCNPTWCWRMDAGCTCCGTDVVEP
FDKYLLSKWKLEYSGTAYIACVEFSKDKRTCDVIADGTVFEHGPYKIQLSDVENIQTK
LPEEVALSHTILSDGTFDLLSVKEVLSSENLCKLESCAHGGAGDFQIFDLRSITGNNI
DNEHFLAPKAELKKLKHSWMSWNGVVQRYTCSVGHWPECGTSGVVEKNSDAFRNLLTV
SENYTNDFYFHALHTSLGASVPTLDIEGRPHKGGGSIQVMVEVDGLILEPKEAIISRL
DLSLHQCTGCFGCVTGVLCTGTVLIEGVEDINLHLRTRTEHFEISHASFPVHTHNVTY
FEIRGFSPIKLNRICLEVEEGKNCKSCPQPVTSCTNADLAPPKEIVLEHRSTLKATQI
DKCGSGFSCWLSGVGSFFKGISGFLGNFFGSYLTSIITFLLLIAGIAALIFLGPRVLC
CLKFFKKGRAVLHMGQKEIQNEGILGLSKAFLSNKDLDPDDMRILLRKSKLN"
misc_feature <798..2174
/locus_tag="CAU96_sMgp1"
/note="Nairovirus M polyprotein-like; Region:
Nairovirus_M; pfam07948"
/db_xref="CDD:285223"
misc_feature 2412..3968
/locus_tag="CAU96_sMgp1"
/note="Hantavirus glycoprotein G2; Region: Hanta_G2;
pfam01561"
/db_xref="CDD:426324"
ORIGIN
1 ctctctctca aagaaagact tgcagcaacc cccaaataca aaacaattga gtctttgatg
61 tgcattacta atcaatgaag gggacactgg tatttgggac caccatgtgt ctcattgtag
121 taacatttta tatgttacta tggctttctg cacagccggt cactgcatat ggcacgtact
181 acacacctgg gaattggaga gataatcatg gcctcagtgt gaatagctat gatgactata
241 tttttagtaa cttcctagac caggtcggcg caacatccac tggagtgcat ggaggcacac
301 aaaagcttgt accactggaa aacagaactc ttgttgtgac cattgagaat gctgagaaca
361 tcacctccaa gttagcacct cttcagacaa gattagttca atctttcttg tcaacacaaa
421 atgacagcct aagctctact ctgcaggact taataaagaa gtttaccttg acaacttaca
481 actctctgtt tgagactgaa gtggatgagc tagacaaatt gcttgcacag gaagatacat
541 acagcttcat acctagaagc aacatctctg ggaatcttgt atctataagg ataaccacaa
601 acagaacatc caaaatggtt atcaaaccca ctttaggagc actacaggca aaaggaacag
661 acgagtatct tgtatgcaca gaaaacagct gggaagagag tgtagaagat gtctatccca
721 ctgtttatgc acaaagaaat tgccaaacca ttggagcatg ctgcagagga aaggaacata
781 acatggatgc agaagacctc aattttgtaa acctttacac aacatcacca aagggaagtg
841 aatacatatt catcaattac cataccagtc atctatcctt ttatgtaagc aactgtgaac
901 ttgtaattga tgttgctggg tgtgttctgc atacttacct agcagaaaaa acaaattatc
961 agatgatggc tggcaatgtg actttccctg ttgcacatgt aataatacct aaagtggaaa
1021 aaaaccgtga atgtgtactg actttgtgtg gaattacaaa aggtgaaaga gtccctggag
1081 ttggttggaa gatggtagaa catgttgttc atgtgcaccc tttctggaat gaaaaacgca
1141 gagagagcca gtcgataagc agaaggaaat tgttatcaat ggatcctgta gctgtccaag
1201 gctacaaatg gcccatgaga tgcaacacca aaaaccaaat gataccattt aagaggtcca
1261 tgttgcatca tcatcttcgt tcagttgctg ggaggaagat agtctactgt aacagctcaa
1321 taatcactga tcaacctctc agttccttgc atggatgcta ccaagttgct gacaagaggt
1381 catactttca atgtcctggt cttgcagcaa atgccaagtc tcagaaagag aaagtaaact
1441 gcacagtgga gcaggccatt caaagatgtg aaaaagcata ttgcctacaa ctaagaatga
1501 atggcacagg tcttgtgaca gttaagggaa gaaactggtc taaaacacaa agatgtgata
1561 acaaatgcct catttcttta gaaaaaaagg aagacgttca gattgtctgc cctgatggaa
1621 cagtccataa gctgattcag aacacagttg acatcaactg tccatttaaa gaaaagttcg
1681 gaggagtcac actgtatata tgtagggcaa ccaacaggcc tcgcttattc tacttctggg
1741 tcttatggat aattctcgga ttccccatgc tcttcttggt cttttctgtc tccagattcc
1801 taactctgct atcctcaaag gttgtgattt gcttcaagag gaagttagat aggaagaaag
1861 gtaaatgcat gcactgtgga tgctatgtga attccgtcta tgaatggcag agacattatg
1921 agtgcaaagt cggtgaatgc cccttctgta gaaagagata ctccgtgttg ggtcttcaac
1981 agcatgcacc aacatgtcta gacatgaaaa gtgttataac caaggacgaa gacattgtga
2041 atgagatact gctgcctaaa cctcttttgt tgttaggcac catcttgtcc aaggccagaa
2101 aggggactag taagtttatg tggatcatag tgatgatcac agttcttatc ttccttgtgc
2161 agcctgtgaa ttctattgag aatgtacatc tacagccagg cgagtgggag gaagaaataa
2221 atgaggtgtc tatctgtaca gatgactgca tcttccttga agaccactgc gtctgcccag
2281 gcaaagaaca taaaagatac aaaagagaac tgctctcaga gcgaatgaaa gatgtgtctg
2341 ctctctacca ggctgatgtg caggctccct ggggaaacgt gcatatagat ggtaccttca
2401 aacccaaata ttcagaaaag tctattaaga tgtcttggtc aagtgcagaa tatgatgaac
2461 taggcaaact gaagctcaat ggaagagcag aggcattatt aaagctagaa cctaagagtg
2521 gagttacatt tgagctctct tctgaaaagt ctcttgaaaa aagaatgctg actataaatc
2581 ttatagactt tacacaagtc tacaagacaa gatttgaata tatcactggt gatcgaaaac
2641 ttggcaactg gatgcatgga acctgtagcg gtgattgtcc taacaaatgt ggatgtgaca
2701 caccaacctg tctcaataca aaatggataa atagcaggaa ttggcattgt aacccaacat
2761 ggtgttggag aatggacgca ggttgtacat gctgtggcac agatgtcgtt gagccatttg
2821 ataagtatct gctcagcaag tggaaactag aatatagtgg cacagcatac attgcatgtg
2881 ttgaattttc caaggataaa aggacatgtg atgtaattgc agatggaact gtgtttgaac
2941 atggaccata caaaattcag ttgtctgatg ttgagaacat acagaccaag ctcccagagg
3001 aagtcgcact gagccacact atactaagtg atgggacatt tgacttacta tctgtcaaag
3061 aggtgttaag ttcagaaaac ctctgcaaac ttgagtcctg tgcacatggt ggtgctggag
3121 actttcaaat attcgatcta aggtccataa ctggaaacaa cattgacaat gagcattttc
3181 ttgctccaaa ggcagaatta aaaaaactca aacactcatg gatgagctgg aatggtgttg
3241 ttcaaagata cacatgctca gttggtcact ggcctgagtg tggcacttct ggtgttgtgg
3301 aaaagaattc agatgctttc agaaatcttc ttactgtgtc tgaaaactac accaatgatt
3361 tttactttca tgcactccat accagtctag gtgcctcagt gccaacctta gacattgaag
3421 ggcgtcctca taaaggaggt ggaagtatac aggtaatggt tgaggtcgac ggactaatat
3481 tggaacccaa agaggccatc ataagtaggc ttgatctatc tcttcatcaa tgcactggtt
3541 gttttggctg tgtcacaggt gttctttgta caggaacagt gctaattgaa ggtgttgaag
3601 acatcaattt gcatcttaga actagaactg aacactttga aataagtcat gcctcctttc
3661 ctgttcacac acacaatgtt acctactttg aaataagagg atttagtcct atcaaactga
3721 atagaatatg cctagaggtt gaagaaggaa agaattgtaa atcatgccca cagccagtca
3781 cttcatgcac aaatgctgac ttggcacctc caaaagaaat agtgctagaa catcgtagca
3841 ctctgaaagc tacacagatt gacaaatgcg gatctggctt cagctgctgg ttgagtggtg
3901 tgggtagttt ctttaaagga atatcaggct ttcttggcaa tttctttggc agctatctaa
3961 cttccattat aactttccta cttcttatag caggtattgc tgccttaatc ttcctagggc
4021 caagagttct ttgctgtctg aaattcttta aaaagggtag agcagtttta catatgggac
4081 aaaaagagat ccagaatgaa ggaatactag gcctaagcaa agcctttctc tccaataaag
4141 accttgatcc tgatgatatg cgtatcctgc ttcgtaaatc caaacttaac tgaacatcag
4201 caaaacaaac acagaaatat aaattcaagt ttcttcccta acttggttga agtgaatttg
4261 ttttgccttt cttttcttcc tttttcttgt tgttttaatc tatttggaga aggactttcc
4321 atttactttt cagtatcttt gctttcatat aaaatatata tatctgtgtg tatttgttat
4381 gtttcattta tgcttgagag tttatgtaag gggggttagc tgccactatt tctt
//
