LOCUS       NC_034503               1898 bp ss-RNA     linear   VRL 10-DEC-2021
DEFINITION  Farallon virus isolate CalAr846 segment S cRNA sequence.
ACCESSION   NC_034503
VERSION     NC_034503.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Farallon virus
  ORGANISM  Farallon virus
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Ellioviricetes; Bunyavirales; Nairoviridae;
            Orthonairovirus; Orthonairovirus bushkeyense.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Walker,P.J., Widen,S.G., Wood,T.G., Guzman,H., Tesh,R.B. and
            Vasilakis,N.
  TITLE     A Global Genomic Characterization of Nairoviruses Identifies Nine
            Discrete Genogroups with Distinctive Structural Characteristics and
            Host-Vector Associations
  JOURNAL   Am J Trop Med Hyg 94 (5), 1107-1122 (2016)
   PUBMED   26903607
REFERENCE   2  (bases 1 to 1898)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAY-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1898)
  AUTHORS   Walker,P.J., Widen,S.G., Wood,T.G., Guzman,H., Tesh,R.B. and
            Vasilakis,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-DEC-2015) Biochemistry and Molecular Biology,
            University of Texas Medical Branch, 301 University Blvd, Galveston,
            TX 77555-1079, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence is identical to KU343156.
            Annotation based on that found in PMID: 26903607.
            
            ##Assembly-Data-START##
            Assembly Method       :: ABySS v. 1.3.5
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Farallon virus"
                     /mol_type="genomic RNA"
                     /isolate="CalAr846"
                     /host="Ornithodoros sp."
                     /db_xref="taxon:248053"
                     /segment="S"
                     /country="USA: South Farallon Island, CA"
                     /collection_date="Jul-1965"
     gene            87..1571
                     /locus_tag="CAU96_sSgp1"
                     /db_xref="GeneID:69042385"
     CDS             87..1571
                     /locus_tag="CAU96_sSgp1"
                     /codon_start=1
                     /product="nucleoprotein"
                     /protein_id="YP_010229103.1"
                     /db_xref="GeneID:69042385"
                     /translation="MATRMRYQNYALDFKGIGDWNTWWSGFKAKHANINSNFTNFESF
                     SNGMFDVGTFIDEAQKIQGNSHADQQRDAILAQAVVQVTKHAAPVKYGGWLVNRSYVE
                     TAIDWFQQNSQTTEVKLWDASYDRLKAQLPDLDQVKGYIKSAVRFRSETGLPGDIGFA
                     VLQGATAAQWKVPMDYITEIQEMLTDMRNRQNLVFGSNRNKEQSRRNGEYMASLILGT
                     ESILGEVPWGSWNKRNKGDKKLLLSSTAIMNALQNNLITEDDIKRFEHDMKNEHATEK
                     DDDVKKAISDILTMLEAFKVERQAMNSNNTGGFIQQGSNIDVIFSSFYWVWKSGCSVN
                     EFPALSKFLNGLGQKFVGKAKMLETLSGVKFKWGKGLLNIISKDNFADRIHMHPAVLT
                     SSRINNDMVSCFGIVPAHNPDLAENGCASLRNITNFETRKNNICAAAIASLFRVYKAA
                     YPRYDQQEVVPMEHMLHQSFLGKTSAMQNSSMIVGNALDVNIVA"
     misc_feature    141..1439
                     /locus_tag="CAU96_sSgp1"
                     /note="Nucleocapsid N protein; Region: Nairo_nucleo;
                     pfam02477"
                     /db_xref="CDD:396852"
ORIGIN      
        1 ctctctcaaa gaaaaacgtg ccaaacccct ccataacaca gtaacattcc tgttgttgta
       61 agaaggtgtg gaaagcactc tttgagatgg caactcgcat gcgctatcag aactatgctc
      121 tggattttaa aggtattggc gattggaata cttggtggtc tggattcaag gccaaacatg
      181 ctaacattaa cagcaatttc actaatttcg aaagcttcag caatggtatg ttcgatgtgg
      241 gaacatttat tgatgaggct caaaaaatcc aaggaaacag ccatgctgat cagcagagag
      301 atgctattct tgctcaagca gttgttcaag tgacaaagca tgccgcaccc gtgaagtatg
      361 gtggatggct ggtaaaccga agctatgtgg agacagcaat tgactggttt cagcagaatt
      421 cacaaacaac tgaggttaag ctctgggatg ccagttatga ccgtttgaag gctcagttgc
      481 cagacctgga tcaagtgaaa ggctacatca aatctgctgt ccgattcaga agtgaaacag
      541 gtctccctgg agacattggg tttgccgttc ttcaaggtgc aacagctgca cagtggaaag
      601 tccccatgga ctacataaca gagatccagg agatgctgac agacatgagg aacaggcaga
      661 acttggtctt tggaagcaac cgaaataaag aacagagcag acgcaatggt gaatacatgg
      721 catctctgat tttaggaact gaaagtatcc taggtgaagt tccttggggc tcttggaaca
      781 agagaaacaa aggagacaaa aaattgctcc tgagctccac tgccatcatg aatgcactcc
      841 aaaataacct gataacagag gatgacatca aaagatttga acacgacatg aagaatgagc
      901 atgctactga aaaagatgac gatgtcaaga aggcaatttc tgacatcctg acaatgcttg
      961 aagcattcaa ggttgaaaga caagccatga acagcaacaa cacaggtggc ttcattcaac
     1021 aagggtcaaa cattgatgtc atcttttcat ctttctactg ggtgtggaaa tcaggatgtt
     1081 cagtgaacga gtttccagca ctgtcgaaat ttctaaatgg cttaggccaa aagtttgtcg
     1141 gtaaagccaa aatgctggaa actctttcag gagtgaagtt caagtggggc aaaggacttt
     1201 tgaacataat atccaaggac aactttgcag accgcataca catgcaccca gcagtcctca
     1261 cctcatccag gatcaacaat gacatggtat cttgttttgg cattgttcca gctcacaatc
     1321 cagatttggc tgaaaatgga tgtgcatcat tgagaaacat caccaacttt gaaacaagaa
     1381 agaacaacat ctgtgcagct gcaattgcca gcctctttcg tgtctacaag gctgcatatc
     1441 caagatatga ccagcaggaa gttgtcccca tggagcacat gctacatcag agcttccttg
     1501 gaaagacctc ggccatgcaa aactcaagca tgattgtcgg aaatgctctg gatgtcaaca
     1561 ttgtagcttg attttctttc cctcttcttt atctgtgtgt tacattgctg tgttttgttt
     1621 acatatttag tttgttctac tgtttgcagt gatttagtgt ggcacctcaa attccaacct
     1681 ctctccctga aaccgtgact gttttaaaca taaaagtctt tctcttttta acagtccatc
     1741 aatgcttcaa ttctaggcag actgctcttc attctattct tctgcttact gcttgctgtt
     1801 cctttctctc tttccttgtt tcgacttgtt tagtttattt cagtttgttt tctatcttaa
     1861 gagtgtaatt gtggaggggt tagaggcaac attatctt
//