LOCUS NC_034510 4436 bp ss-RNA linear VRL 10-DEC-2021
DEFINITION Dera Ghazi Khan virus isolate JD254 segment M cRNA sequence.
ACCESSION NC_034510
VERSION NC_034510.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Orthonairovirus khani
ORGANISM Orthonairovirus khani
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Ellioviricetes; Bunyavirales; Nairoviridae;
Orthonairovirus.
REFERENCE 1 (bases 1 to 4436)
AUTHORS Walker,P.J., Widen,S.G., Wood,T.G., Guzman,H., Tesh,R.B. and
Vasilakis,N.
TITLE A Global Genomic Characterization of Nairoviruses Identifies Nine
Discrete Genogroups with Distinctive Structural Characteristics and
Host-Vector Associations
JOURNAL Am J Trop Med Hyg 94 (5), 1107-1122 (2016)
PUBMED 26903607
REFERENCE 2 (bases 1 to 4436)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (08-MAY-2017) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4436)
AUTHORS Walker,P.J., Widen,S.G., Wood,T.G., Guzman,H., Tesh,R.B. and
Vasilakis,N.
TITLE Direct Submission
JOURNAL Submitted (22-DEC-2015) Biochemistry and Molecular Biology,
University of Texas Medical Branch, 301 University Blvd, Galveston,
TX 77555-1079, USA
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence is identical to KU343152.
Annotation based on that found in PMID: 26903607.
##Assembly-Data-START##
Assembly Method :: ABySS v. 1.3.5
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4436
/organism="Orthonairovirus khani"
/mol_type="genomic RNA"
/isolate="JD254"
/host="Hyalomma dromedarii"
/db_xref="taxon:3052525"
/segment="M"
/country="Pakistan"
/collection_date="04-Apr-1966"
gene 44..4282
/locus_tag="CA768_sMgp1"
/db_xref="GeneID:69042387"
CDS 44..4282
/locus_tag="CA768_sMgp1"
/codon_start=1
/product="glycoprotein precursor"
/protein_id="YP_010229104.1"
/db_xref="GeneID:69042387"
/translation="MFNKMGFLTIWLLCSLCSLSADSETSTAYENTTSLSPTSMLPSN
VSTTSEPAPSPTTLTPTTQLPLFSENELNNSIIVILNQTNIGRRTVRSVQYFTDRTTR
MRMALKLLESAYYAGYRAKSYEDSTAKLFGTFLKGFSALFLQPSKPKLKPTPETMVGQ
PPELQEVDTSDEMEGTYYSFQLREASRGNNFTTTIFLDLVANKTIKFPVPDTGYMLGF
GKQTSLICNEAKPGTDDHNVVKKEWVYPFNEQTECHADNDVYLENLNYINLFKSSLDN
SGLVVINYLTTYLRFRYYNCEMLIEVAGCVMRTVRFARWAYFDFNNDTHAYPIAHIMI
NRHVDNTGCMIALCAIINDAEETITRSKFKGVLIHVQPERKQLRHLLSVEPSHDNGAV
KQKYRNKCNTKNQLLPYMRSIIHTLKNPLPGQKVAFCNGTKHTSLPLGSLHQCYSVAN
VQTHHQCPGLSHNVKAVYDEENVSCTVDYHTIECDQGYYCFHLKMNGSGPYTVRGDGY
SHVDTCDGSCTVKVPLTESSFVITCPDGEGHLLRYNLFNHSCPLIKYLGNSAFFICRA
TKRPGVFYAAFFWLFGGCPFTYLVFTLLKYGTLFLTKIIIKLKLLADRSKGICQQCGD
FVRSRPEWQRHEDCKFGNCPYCRSRLSLSSLKKHICQCLEREAVLDRDSTTVERRLVP
SMLRLLGTVICWLQRAAVKSTWLLVSFVLVIVLISPVQSLHNVNLKPGLWEKEVVEVE
LCDDKCYVSNDRCYCKPNTEDTSRLEAGNRKLLEVDFPFKLGYYGSKAVQIWNNTVSA
SVVLDVKTPWGTVNVGKTHSPSYSTSSIRMTWSSVIKDDHGHIILSGKSTSLMPVGKD
TGLSWELTTEKSSEKRILTVSVLDSTQIYNARFNYLTGDRKIGSWMHGTCSGNCPDKC
GCDRTSCISQTWMKSRNWHCNPTWCWRVDEGCTCCAADVETLYNDWIVTKWSLEYVST
EALICVDYDHDTRSCDILNGELTFHAGPYKVQISEVMSEKFKLPDEISIFHKVPGDDT
RIDLMKVHHVTSARNMCKLQSCTHGSAGDSQVYNLNHFISNDIRSEYFFLQKDKKKVE
REHWMSWEGVDLDYHCDSGHWPKCYANGAVTHNKEAFENLLKVEQDYLQSFFFHVLAC
RLNGSIPALELQARPKRQAGNINVYVEVNKLRLNPIDAEITELKMSIYECKGCYGCLE
GGECTIGFLIKGVEKIGLHVISRTDHVTVSESTIIVSALERAKTTIKFFSAVKVKELC
FTVEELDICKSCDPDYKVCKTTELKEPEGILIEHRGSLITTQKDNCTGKIVCWSGSFL
SLFSGLGKFLSFLGGGLLKGVLYILLPGLVIFAFIVWGPQLLSLMRAKGLIRRGLKGR
LPLKMDEGILSLEKMFTKDKLQQDDLLNLIVKNK"
misc_feature <818..2206
/locus_tag="CA768_sMgp1"
/note="Nairovirus M polyprotein-like; Region:
Nairovirus_M; pfam07948"
/db_xref="CDD:285223"
misc_feature 2507..4036
/locus_tag="CA768_sMgp1"
/note="Hantavirus glycoprotein G2; Region: Hanta_G2;
pfam01561"
/db_xref="CDD:426324"
ORIGIN
1 ctctcaaagt catatatgca gcaaccccaa gtagttaagc aacatgttta acaaaatggg
61 gtttttgact atctggcttt tatgcagctt gtgcagtctg tcagccgaca gtgaaacttc
121 cactgcatat gagaatacaa catcattgtc accaacatct atgttgccca gtaatgtctc
181 gactacttca gaacctgcac cgtcccctac caccttgact cccacaaccc agttgccatt
241 attcagtgag aatgaattaa ataactctat tatagttatc ctcaatcaaa cgaatattgg
301 caggcggact gtccgttcgg tgcaatattt cacagacaga acaaccagaa tgagaatggc
361 actgaaacta ttagagtctg catattatgc tggatacagg gcaaagagct acgaagactc
421 tactgcaaaa ctgtttggaa ccttccttaa aggcttttct gcactgtttc ttcaaccaag
481 caaacctaaa ttaaaaccta cacctgaaac catggtaggg caacctcctg aactccaaga
541 agttgatacc tcagatgaaa tggagggtac ctattacagt tttcaattaa gagaagcgag
601 cagaggcaac aatttcacga ccaccatttt cctagatttg gttgctaaca aaaccattaa
661 gttcccagtc ccagatacag gctacatgtt aggatttggc aagcaaacaa gcttaatatg
721 taacgaagca aaaccaggaa ctgatgatca taatgtggta aagaaagaat gggtttatcc
781 ctttaatgaa cagactgagt gtcatgcaga caacgatgtt tatttggaaa atttgaatta
841 catcaatctg ttcaaatcaa gtctagataa tagtggattg gttgttataa actacttaac
901 gacttatcta agattccgat attacaactg tgagatgctg attgaagttg caggttgtgt
961 tatgcgtact gttagattcg caagatgggc atattttgac ttcaacaatg acacacatgc
1021 atatcctatt gctcacataa tgatcaatag gcatgtggac aacacaggtt gcatgattgc
1081 cctctgcgca attatcaatg atgctgaaga aaccatcaca cgcagtaagt tcaaaggtgt
1141 actaattcat gtacagccag aaagaaaaca actgaggcat ctgctctctg ttgagccttc
1201 acatgacaat ggagctgtta agcaaaagta tcgaaataaa tgcaacacca aaaatcagtt
1261 gttgccatac atgaggtcaa tcatccacac tctcaaaaat ccattaccag ggcagaaggt
1321 tgcattttgc aatgggacaa agcacacaag tcttccatta ggcagtctgc accagtgcta
1381 ctcagttgct aatgtacaaa cccaccatca gtgtccaggg ttatcgcata atgttaaggc
1441 ggtctatgat gaagagaatg tcagttgtac cgtagactac cacacaatag agtgtgacca
1501 gggctattac tgcttccatc tcaaaatgaa cggcagtgga ccttacacag tgagagggga
1561 tggctattca catgtggata cctgtgatgg aagctgcact gttaaagttc cccttacaga
1621 aagcagcttt gttataactt gcccagatgg tgaaggccac ctacttcgtt acaacttatt
1681 caaccacagc tgtcccctta taaagtatct tggaaacagt gctttcttca tctgtagagc
1741 cactaaaaga cctggtgtct tttatgcagc attcttctgg ctttttggtg gttgtccatt
1801 cacttatctg gtctttacct tattaaaata tggaactctg ttcttaacaa aaatcattat
1861 aaagctgaaa ctcttggcag acagaagtaa aggaatatgt caacagtgtg gtgacttcgt
1921 cagaagcaga cctgagtggc agaggcatga ggactgcaag tttggaaact gtccttactg
1981 cagatcacgt ttgagtctgt ccagcctaaa aaaacatatt tgccaatgtc ttgagagaga
2041 agcagtccta gacagagata gtacaaccgt tgaacggcga cttgtgccta gcatgctaag
2101 acttctaggt acagtaatct gttggcttca gagagcagct gtaaaatcta cttggttact
2161 ggtcagtttt gtgcttgtca ttgtgctgat tagccctgta cagagccttc acaatgtaaa
2221 cctgaaaccc ggcctctggg agaaagaagt tgttgaagtt gagctctgtg atgacaaatg
2281 ttatgtcagc aatgacaggt gttactgtaa gcccaacact gaagacactt caaggctaga
2341 agcaggcaac aggaagttat tagaggtgga cttcccattc aaattaggct actatggatc
2401 taaggcagtg caaatttgga acaacacagt aagtgccagt gtggtactgg acgtaaagac
2461 tccttggggc actgtaaatg ttggcaagac acacagccct tcatactcaa cgtcttcaat
2521 tagaatgacc tggagctcag taattaaaga tgaccatggc catatcatac tatccggtaa
2581 atctacctct ttaatgcctg tcggaaagga cactggttta agctgggagt taactactga
2641 aaaatcaagc gaaaagagga ttttaacagt gagtgtatta gactcaactc aaatctacaa
2701 tgccagattt aattacctta ctggtgatag gaaaattggc agctggatgc atggtacctg
2761 ttccggcaac tgtcctgaca agtgtggatg tgacagaacc tcttgtataa gtcagacttg
2821 gatgaaatct agaaactggc actgtaatcc tacctggtgt tggcgtgttg atgagggttg
2881 tacttgctgt gcagcagatg tggagactct ctacaatgac tggattgtca ccaaatggtc
2941 attagaatac gtttcaactg aagcattgat ttgtgtggac tatgaccatg acactagaag
3001 ctgtgacatc ttaaatggtg aattgacatt tcatgcagga ccttacaaag ttcaaatctc
3061 agaagtcatg tcagaaaagt tcaaactgcc tgatgaaata agtatctttc acaaagtgcc
3121 tggagacgac actagaatag acctcatgaa ggttcatcat gttactagtg caagaaacat
3181 gtgtaagcta caatcatgca cacatggtag tgctggagac tctcaagttt acaatcttaa
3241 ccactttata tctaatgaca ttaggtctga atacttcttc ttgcagaagg ataaaaagaa
3301 agttgaaaga gagcactgga tgagttggga aggagtagac ctcgactatc attgtgactc
3361 aggacactgg cccaagtgtt atgctaatgg agcagtgact cacaacaaag aagcctttga
3421 aaatctactg aaagtggagc aagactatct gcaatccttc ttttttcatg tacttgcttg
3481 ccgccttaat ggtagcatac cagctcttga gctacaggcc cgaccaaagc gccaggcagg
3541 taacattaat gtctatgttg aagtcaacaa actcagactg aacccaatcg atgctgagat
3601 aactgaattg aaaatgtcaa tatatgagtg taaaggttgt tatggctgcc tggaaggtgg
3661 agaatgcact ataggctttc tgatcaaagg agtagaaaag ataggtttac atgtgatttc
3721 aagaacagat catgtgactg tttcggagtc caccatcata gtgtctgcat tagagcgtgc
3781 aaaaaccact attaaattct tttcagctgt taaggtcaaa gaactatgtt ttactgttga
3841 agaattagac atctgcaagt cctgtgaccc agattataaa gtatgcaaaa caacagagtt
3901 gaaagagcca gaagggattt taattgaaca tcggggctct ctcatcacta cgcaaaagga
3961 taattgtact ggcaaaattg tctgctggtc tggaagcttt cttagccttt tctcaggatt
4021 gggtaaattt ttatcattcc ttggaggtgg gctcctaaaa ggagtccttt acattctttt
4081 accaggcctg gttatttttg cttttattgt gtggggacca cagcttctta gcctaatgag
4141 agccaaagga ctgattagaa gaggcttgaa aggcaggctt ccactcaaaa tggatgaagg
4201 aatactaagc ttagaaaaaa tgttcaccaa agacaagctg caacaagatg accttcttaa
4261 cttgattgtt aagaacaagt aaactgctac gccactataa tcctatataa ctgcggcata
4321 atggctaagc agttgattat gtatgcaaac taacagtgta tctactaatc atgcacattc
4381 taatcatata aacaacatgg tctaattaca aatggggtgt gctgccacaa tttctt
//
