LOCUS       NC_034521               1768 bp ss-RNA     linear   VRL 10-DEC-2021
DEFINITION  Dera Ghazi Khan virus isolate JD254 segment S cRNA sequence.
ACCESSION   NC_034521
VERSION     NC_034521.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Orthonairovirus khani
  ORGANISM  Orthonairovirus khani
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Ellioviricetes; Bunyavirales; Nairoviridae;
            Orthonairovirus.
REFERENCE   1  (bases 1 to 1768)
  AUTHORS   Walker,P.J., Widen,S.G., Wood,T.G., Guzman,H., Tesh,R.B. and
            Vasilakis,N.
  TITLE     A Global Genomic Characterization of Nairoviruses Identifies Nine
            Discrete Genogroups with Distinctive Structural Characteristics and
            Host-Vector Associations
  JOURNAL   Am J Trop Med Hyg 94 (5), 1107-1122 (2016)
   PUBMED   26903607
REFERENCE   2  (bases 1 to 1768)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1768)
  AUTHORS   Walker,P.J., Widen,S.G., Wood,T.G., Guzman,H., Tesh,R.B. and
            Vasilakis,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-DEC-2015) Biochemistry and Molecular Biology,
            University of Texas Medical Branch, 301 University Blvd, Galveston,
            TX 77555-1079, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence is identical to KU343153.
            Annotation based on that found in PMID: 26903607.
            
            ##Assembly-Data-START##
            Assembly Method       :: ABySS v. 1.3.5
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Orthonairovirus khani"
                     /mol_type="genomic RNA"
                     /isolate="JD254"
                     /host="Hyalomma dromedarii"
                     /db_xref="taxon:3052525"
                     /segment="S"
                     /country="Pakistan"
                     /collection_date="04-Apr-1966"
     gene            53..1552
                     /locus_tag="CA768_sSgp1"
                     /db_xref="GeneID:69042395"
     CDS             53..1552
                     /locus_tag="CA768_sSgp1"
                     /codon_start=1
                     /product="nucleoprotein"
                     /protein_id="YP_010229108.1"
                     /db_xref="GeneID:69042395"
                     /translation="MAGYNFELDFPTVLDWESWYLGYKSKHPQLNSMFTNYDSFASGV
                     PDLTQLQQEMSRHKDDPRGLKDSIFGRAVVKLTEHAAPIKECAWLVNKTFITDALQWF
                     ETNKDQDYVKIWDASYTTLMSSLPSLEQVQAYQRAAIKFRQNVLMPKDTAFQTLGGEV
                     LVNYKVNKTIITSVLDMLKDMENKRSALRDPSGAPSSNRKETIDVNSKWMMGWLNDEA
                     ALLDMPPWGAWDKTSARGLPIALTSIVKSEQVLKVDLTDTVNDKKARIARLMSLKTDE
                     AKDFDTDAIRKMHDVLDKWSTFKTSLKATPAQTGEPGFGQQAAALDTVFSACYWLWKS
                     GVSVNSFPALSKFLHELGSKVVGKTKLASVLKACGWKWGKGLLNIMSIGNFNGNKIHM
                     HPAVLTAGRMSSDMVISFGSVPAYNADLAEESVGSIRSILNFETNRRNSCAEGIVKLW
                     DVFCAGYEYQEEEIVPPEHMLHQSFLGKVSPFQNVSKREGDALKVHITS"
     misc_feature    95..1423
                     /locus_tag="CA768_sSgp1"
                     /note="Nucleocapsid N protein; Region: Nairo_nucleo;
                     pfam02477"
                     /db_xref="CDD:396852"
ORIGIN      
        1 tctctcaaag tcatacgtgt ctcgtacccc attgttactt cagtgcagct agatggcagg
       61 ctacaatttc gaactagatt tcccgactgt gttagactgg gaatcatggt accttgggta
      121 caaaagcaag caccctcagc taaactctat gttcaccaac tatgacagct tcgcctcggg
      181 agtaccagat ctgactcagc ttcagcagga gatgtcaaga cacaaagacg atcctagagg
      241 gctcaaagac tctatctttg gacgtgctgt agtcaaattg acagagcatg ctgctcctat
      301 aaaggaatgt gcctggcttg tgaataaaac atttatcact gacgcccttc aatggtttga
      361 gactaataag gatcaagact atgtgaagat ctgggacgct agttacacta cattgatgtc
      421 ttcgctgcct agccttgaac aggtgcaggc ttatcagagg gctgccatca agttcaggca
      481 aaatgttctg atgcccaaag acactgcatt ccagactctc ggaggggaag tccttgtcaa
      541 ttataaggta aataaaacca tcatcacctc tgtcttagac atgctcaaag acatggaaaa
      601 caaaaggtct gctctcaggg atccaagtgg tgcacctagt tccaacagaa aggaaaccat
      661 tgatgtcaac tcaaagtgga tgatgggctg gctcaatgac gaggctgctc ttcttgacat
      721 gcctccctgg ggagcatggg acaaaacaag tgctagagga cttccaatcg ctttgacttc
      781 gattgtcaag tctgaacagg tcttaaaggt ggatctgact gacactgtca atgacaagaa
      841 ggcaagaatt gcccgcctta tgagccttaa aacagatgag gccaaagact ttgacactga
      901 tgctatcagg aaaatgcatg atgttctgga taaatggagc acctttaaga catcactaaa
      961 agctacacca gcccagacag gagaacctgg cttcggacaa caggcagcag ctttagacac
     1021 agttttttct gcctgttact ggctgtggaa gtctggagtt tcagtcaact catttcccgc
     1081 cttgtcaaag ttcctgcatg agcttggcag caaggtagta ggtaagacta aacttgcctc
     1141 agtacttaag gcatgtggat ggaagtgggg aaaaggtctg ctgaacatca tgtctatcgg
     1201 gaactttaac ggcaacaaaa tccatatgca tcctgccgta ctgacagctg ggagaatgtc
     1261 atctgacatg gtcatttcat ttggatcagt tcctgcatac aatgctgacc ttgcagaaga
     1321 gtctgtaggc agtattagga gcattttgaa ttttgagaca aacaggagaa acagctgtgc
     1381 tgaaggaatc gtgaagctct gggatgtctt ttgtgctgga tatgaatatc aggaagaaga
     1441 aatcgtccct cctgaacaca tgctgcatca gtccttcctt gggaaagttt ctcctttcca
     1501 aaatgtgtcc aagcgtgaag gagatgcact caaagtgcac atcacttcct aagttacaca
     1561 ctgcagcttc ataatacaaa tcaaaaggta gcttaatatt aatgcacatc actatactta
     1621 taagcagcta ttgtaatcac ttgcattaac actctacttt aatttacctt cttttcttca
     1681 ccttattcca ttcattttat tctattttgt cactttgctt caccagcatt gattaggtaa
     1741 aatttggggt gtgagacaac attatctt
//