LOCUS NC_037065 2974 bp ss-DNA circular VRL 13-AUG-2018
DEFINITION Exomis microphylla associated virus isolate 2-90-C1, complete
genome.
ACCESSION NC_037065
VERSION NC_037065.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Exomis microphylla associated virus
ORGANISM Exomis microphylla associated virus
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Geminiviridae; Becurtovirus;
Exomis microphylla latent virus.
REFERENCE 1 (bases 1 to 2974)
AUTHORS Claverie,S., Bernardo,P., Kraberger,S., Hartnady,P., Lefeuvre,P.,
Lett,J.-M., Filloux,D., Harkins,G.W., Varsani,A., Martin,D.P. and
Roumagnac,P.
TITLE From spatial viral metagenomics to biological and molecular
characterization of plant viruses: the case study of geminiviruses
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2974)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (22-FEB-2018) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2974)
AUTHORS Claverie,S., Bernardo,P., Kraberger,S., Hartnady,P., Lefeuvre,P.,
Lett,J.-M., Filloux,D., Harkins,G.W., Varsani,A., Martin,D.P. and
Roumagnac,P.
TITLE Direct Submission
JOURNAL Submitted (25-SEP-2017) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MG001960.
##Assembly-Data-START##
Assembly Method :: DNAbaser v. V4
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2974
/organism="Exomis microphylla associated virus"
/mol_type="genomic DNA"
/isolate="2-90-C1"
/host="Exomis microphylla"
/db_xref="taxon:2093275"
/country="South Africa"
/collection_date="2012"
gene 278..547
/locus_tag="C5Y54_gp1"
/db_xref="GeneID:35997078"
CDS 278..547
/locus_tag="C5Y54_gp1"
/codon_start=1
/product="v3"
/protein_id="YP_009465978.1"
/db_xref="GeneID:35997078"
/translation="MMVCLPDWLFLLLILSILVQAAVGFYGSFQGERFSSKLSGISSR
CDELFVALQQVVYSRNASRGNRNPYCRRAGELYTVPEAGEENPQV"
misc_feature 281..532
/locus_tag="C5Y54_gp1"
/note="Curtovirus V3 protein; Region: Curto_V3; pfam07436"
/db_xref="CDD:369364"
gene 354..731
/locus_tag="C5Y54_gp2"
/db_xref="GeneID:35997074"
CDS 354..731
/locus_tag="C5Y54_gp2"
/codon_start=1
/product="v2"
/protein_id="YP_009465979.1"
/db_xref="GeneID:35997074"
/translation="MVPFRVRDFPRNYPAFLAAATSCLLRYNKWFILGTLPEVTGTLT
VEEQENFIQFQKQVRKILRSNWSFVRKCRVYEIVYTKYGGPEPEEKVPEWDPVDAEEE
DEVWEVPVEEVSGEKACESKQGC"
misc_feature 354..>623
/locus_tag="C5Y54_gp2"
/note="Curtovirus V2 protein; Region: Curto_V2; pfam07325"
/db_xref="CDD:148753"
gene 598..1350
/locus_tag="C5Y54_gp3"
/db_xref="GeneID:35997075"
CDS 598..1350
/locus_tag="C5Y54_gp3"
/codon_start=1
/product="capsid protein"
/protein_id="YP_009465980.1"
/db_xref="GeneID:35997075"
/translation="MAAQNLKRKSQSGTPWMRRKKTKSGKSQWKKYPVKRPVNRSRAV
KLKMYDDTFGGSGIGSTVSNDGMITMLNNYVQGIGDSQRSTNVTVTKRLKFDMALMAS
SGFWSAPNYMAQYHWVIVDRDVGSTFPDKLDTIFDIPSQGQGMPSTYRIRRDMNERFI
VKRKWTTHMMSTGTDYGGKQTYKAPSMPNYKKAMNINIRNINVKTMWKDTGGGKYEDV
KENAILYVVVNDNTDNTNMYATLFGNCRMYFY"
misc_feature 610..1347
/locus_tag="C5Y54_gp3"
/note="Geminivirus coat protein/nuclear export factor BR1
family; Region: Gemini_coat; pfam00844"
/db_xref="CDD:307130"
gene complement(1613..2931)
/locus_tag="C5Y54_gp4"
/db_xref="GeneID:35997076"
CDS complement(join(1613..2016,2163..2931))
/locus_tag="C5Y54_gp4"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_009465981.1"
/db_xref="GeneID:35997076"
/translation="MRIFFRPPTQKSNQLFLTYSYSFKMPRVPNRNRPASSYTAYYRF
QKKNAFLTYSQIGGDFKDYIFEKLHTLLLPYEILFLAVSLEHHSPTEEHPEGGFHTHC
IFQCNKKLQVNGNLFFNILLPNGKELHPRIDGLNAPKRAMDYITKEDTNPRTMGELRS
SGRSPNSVGRSNDEWRRILDASNTKDEFLNNVRESCPTDYVLRWPSILSFANYHYREI
VPPYTPRWTEFNGLPDIVKQWAEDNIYFVSESTFNYDLFRPRSLYICGPSRTGKTQWA
RSLGRHHYMSGQVLDWTNYDVNHTTYHVIDDIRYQKIQTELFKSLIGCNEEYTVWIKH
KPNVKIPGGRPCIAITNPDMDWIQCMSDAMRDWFYANCEVYYLSSTEVWFHRQADG"
misc_feature complement(2488..2808)
/locus_tag="C5Y54_gp4"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(join(1961..2016,2163..2421))
/locus_tag="C5Y54_gp4"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
gene complement(1948..2931)
/locus_tag="C5Y54_gp5"
/db_xref="GeneID:35997077"
CDS complement(1948..2931)
/locus_tag="C5Y54_gp5"
/codon_start=1
/product="repA"
/protein_id="YP_009465982.1"
/db_xref="GeneID:35997077"
/translation="MRIFFRPPTQKSNQLFLTYSYSFKMPRVPNRNRPASSYTAYYRF
QKKNAFLTYSQIGGDFKDYIFEKLHTLLLPYEILFLAVSLEHHSPTEEHPEGGFHTHC
IFQCNKKLQVNGNLFFNILLPNGKELHPRIDGLNAPKRAMDYITKEDTNPRTMGELRS
SGRSPNSVGRSNDEWRRILDASNTKDEFLNNVRESCPTDYVLRWPSILSFANYHYREI
VPPYTPRWTEFNGLPDIVKQWAEDNIYFVSESTFNYDLCNNCKGSVLTDNDYDIIEHY
ELWLTEQNLLCNEDINDTILTPRSQTTDQSVQEVCTSADLQEQEKPNGQDL"
misc_feature complement(2488..2808)
/locus_tag="C5Y54_gp5"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(<2188..2421)
/locus_tag="C5Y54_gp5"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
ORIGIN
1 taagattccc cgcatttgcc ctgccacgtg tcataatctg cgtggttgaa ataaagtagt
61 ggtccccacc actaatatta aataaaagaa aaatgatgtt gactggtcaa aagttgcggc
121 tgctttatta aagtagcttt attaaagtaa ctttatgacg tcagccacgt gatcttgtcg
181 ggagatttaa atttaaatta ttgtacggac gttgcttgct gggcaaggaa agtaaaataa
241 accggtccgg ttttatttaa ataatttaat attgtcgatg atggtttgtt tgccggactg
301 gttatttttg ctcctaatat tgagtatttt agtacaagca gccgttggat tttatggttc
361 ctttcagggt gagagatttt cctcgaaatt atccggcatt tctagccgct gcgacgagct
421 gtttgttgcg ttacaacaag tggtttattc taggaacgct tccagaggta acaggaaccc
481 ttactgtaga agagcaggag aactttatac agttccagaa gcaggtgagg aaaatcctca
541 ggtctaattg gtcctttgtt agaaagtgta gggtatacga aatcgtgtat acgaagtatg
601 gcggcccaga acctgaagag aaagtcccag agtgggaccc cgtggatgcg gaggaagaag
661 acgaagtctg ggaagtccca gtggaagaag tatccggtga aaaggcctgt gaatcgaagc
721 agggctgtta agctgaagat gtatgacgat acgtttggag gatctggcat cggttctacc
781 gtcagtaatg acggtatgat aacgatgctc aacaattacg tacagggtat tggagatagc
841 cagaggtcga cgaatgtgac cgttacgaaa cgtctgaagt tcgatatggc gttgatggcc
901 agttcaggtt tctggtccgc accaaactac atggcgcaat atcattgggt tattgtagat
961 cgagatgtcg gtagcacgtt tcctgataag ttggatacaa tatttgatat tcctagtcaa
1021 gggcagggga tgccctccac gtataggatc cggagggata tgaacgagag gttcatagtg
1081 aagaggaagt ggactacaca catgatgtct acgggtacag attacggcgg taagcagacg
1141 tataaggcgc cttcaatgcc gaattacaag aaggcaatga acatcaatat acggaatatc
1201 aatgtgaaga cgatgtggaa ggacaccgga ggtgggaagt atgaagacgt taaggagaac
1261 gcgatattgt atgttgtcgt caacgataac actgataata cgaatatgta cgcaacactg
1321 tttggcaact gtaggatgta tttttactga ataatgtaaa ttaacacaat gatgttgttg
1381 tattcaaaaa tgagacttgg cgaatttgtt tgggggagat aataaatgtg atattcataa
1441 tatcaagtac ttttgcatta caaacacgaa aacgaaaaaa agtaaaaact gaaaccccta
1501 aaaaaagtta ccggacctaa taatcttgtt gcatcacctc gtgtttagat agggcgagcc
1561 cgttagggcg agcaaagaga ttcgtcggag acgaatcgta aaggcgaagc ctttacccat
1621 cggcttgccg atggaaccaa acttctgtag aggagagata gtacacctcg cagttcgcat
1681 agaaccagtc tctcattgcg tcgctcatgc attgaatcca gtccatgtct ggatttgtta
1741 ttgcgatgca aggtctccct cctggaattt taacgtttgg tttgtgttta atccaaactg
1801 tatactcttc attacaacca attagggatt taaataattc agtttggatt ttttgatatc
1861 ttatatcatc tattacatga taagtagtat ggtttacatc gtagttcgtc cagtcaagga
1921 cctggccaga catgtagtga tgtctgccta gagatcttgc ccattgggtt tttcctgttc
1981 ttgaaggtcc gcagatgtac agacttcttg gacggactgg tctgttgtct ggctcctggg
2041 ggttaaaata gtatcattaa tatcttcgtt gcataatagg ttctgttctg ttaaccataa
2101 ctcatagtgt tctatgatgt cgtagtcgtt atccgtcaga acagaaccct tgcagttatt
2161 acataaatcg taattaaagg ttgattcact cacgaaatat atattatctt ccgcccactg
2221 tttgacgata tcaggtaacc cgttgaattc tgtccatctg ggcgtataag gaggcacaat
2281 ctccctgtag tgatagttgg cgaaggaaag aatggatggc catctgagga cgtagtctgt
2341 tgggcatgat tctcggacgt tgttgaggaa ctcgtccttg gtgttggatg cgtcgagaat
2401 tcttctccat tcgtcatttg atctaccaac gctgttcgga gatctcccag aggatcgtaa
2461 ctcacccatc gttctggggt ttgtatcctc ctttgtgatg tagtccattg ctcgctttgg
2521 ggcgttgagt ccgtcgatcc ttgggtgtaa ctccttccca tttgggagga gaatattgaa
2581 aaacaggttc ccattaacct gtaatttttt attgcattgg aagatgcagt gtgtgtggaa
2641 tccgccctct ggatgttctt cagtagggct gtggtgttct agggaaacag caaggaataa
2701 tatttcgtat ggtagtagaa gtgtgtgtaa tttttcgaat atatagtctt tgaaatctcc
2761 acctatttgt gaataggtga ggaaagcatt tttcttttga aaacggtagt aggctgtgta
2821 tgaggaagca ggtctgtttc tgtttgggac acgtggcatt ttgaaggagt aagagtaagt
2881 aaggaatagt tggttactct tctgggtagg gggtctgaaa aaaattctca tatatagagt
2941 aagagtatac agtagtatgt gtggcaaatg cgga
//
