LOCUS NC_038364 3344 bp RNA linear VRL 24-AUG-2018
DEFINITION Loie River virus isolate R5074 glycoprotein precursor (GPC) and
nucleocapsid protein (NP) genes, complete cds.
ACCESSION NC_038364
VERSION NC_038364.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Mammarenavirus loeiense
ORGANISM Mammarenavirus loeiense
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Ellioviricetes; Bunyavirales; Arenaviridae;
Mammarenavirus.
REFERENCE 1 (bases 1 to 3344)
AUTHORS Blasdell,K.R., Duong,V., Eloit,M., Chretien,F., Ly,S., Hul,V.,
Deubel,V., Morand,S. and Buchy,P.
TITLE Evidence of human infection by a new mammarenavirus endemic to
Southeastern Asia
JOURNAL eLife 5, e13135 (2016)
PUBMED 27278118
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3344)
AUTHORS Duong,V., Eloit,M., Blasdell,K. and Buchy,P.
TITLE Discovery of a new arenavirus in rodents and human clinical
specimens in Cambodia and Thailand
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3344)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-AUG-2018) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 4 (bases 1 to 3344)
AUTHORS Duong,V., Eloit,M., Blasdell,K. and Buchy,P.
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2013) Virology Unit, Institut Pasteur in
Cambodia, 5, Monivong Boulevard, PB 983, Phnom Penh, Phnom Penh
12201, Cambodia
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KC669698.
##Assembly-Data-START##
Assembly Method :: CLC v. 5.5
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3344
/organism="Mammarenavirus loeiense"
/mol_type="genomic RNA"
/isolate="R5074"
/host="Bandicota sp."
/db_xref="taxon:3052313"
/segment="S"
/country="Thailand"
/collection_date="2008"
gene 58..1536
/gene="GPC"
/locus_tag="D1P92_sSgp1"
/db_xref="GeneID:37616732"
CDS 58..1536
/gene="GPC"
/locus_tag="D1P92_sSgp1"
/codon_start=1
/product="glycoprotein precursor"
/protein_id="YP_009505803.1"
/db_xref="GeneID:37616732"
/translation="MGQIVTLFQSLPHIIDEVINIVLITLSVIAILKSVYNLATCGIL
QLVCFLLLCGRSCSVMMDQFNLTSVELDMNVLNLTMPLSCSRNNSHHYIFVGNSSGLE
LTLTNTSLLNHKFCNLSDAHRRAEYDVALMSIVSTFHLSIPNFNQYEAMSCDFNGGKI
TVQYNLSHESALDAANHCGTVANGILETFHKFFWSNNIKDAYQLPNQGKLAHCYSTSY
QFLIIQNTTWEDHCSFSRPTPLGYLSLLGNRVKQIYISRRLLGTFTWTLTDSSGSELP
GGYCLSKWMLIAAEMKCFGNTAIAKCNEKHDSEFCDMLRLFDFNREAIKRLRIEANKS
LNLITKAVNSLINDQLIMRNHLRDLMGIPYCNYTKFWYLNNTRTGQVSLPQCWLITNG
SYLNKTEFTNDIEREANNLVTEMLQKEYTERQGKTPLGLVDIFIFSTSFYLITVFLHL
VKIPTHRHLVGAPCPKPHRLNSMAICHCGLYKQPGKPTVWKR"
misc_feature 58..1512
/gene="GPC"
/locus_tag="D1P92_sSgp1"
/note="Arenavirus glycoprotein; Region: Arena_glycoprot;
pfam00798"
/db_xref="CDD:279177"
gene complement(1485..3266)
/gene="NP"
/locus_tag="D1P92_sSgp2"
/db_xref="GeneID:37616731"
CDS complement(1485..3266)
/gene="NP"
/locus_tag="D1P92_sSgp2"
/codon_start=1
/product="nucleocapsid protein"
/protein_id="YP_009505804.1"
/db_xref="GeneID:37616731"
/translation="MSNSKEVKSFQWTQSLRRELAPYCTNVKLQVIKDAQSLLHSLDF
SEVSNVQRLMRKDRRDDNDLKRLRDLNQAVNNLVELKSQQQKNILTVGQLSSDDLLVL
AADIDRLKNKILRTERPQSTGIYMGNLTSQQLEQRKRLLEMVGMAKPNIRAGPDGVVR
LWDVRNPELLNNQFGTMPSLTMACMAKQGQSDLNDVVQALNDLGLIYTAKYPNSSDLD
QLSKEHPILTIIDISKSGLNVSGYNFSLSAAVKAGACMLDGGNMLETIKITPQNIDGI
LKKTLNVKRSLGMFVSDTPGDRNPYENLLYKLCLSGNGWPYISSRTAIIGRAWDNTVV
DLNKGGNGPKDQPNHPSLNDRLKVPGLQQPAGLTYSQFMCLKDMMASLDPNAKTWIDI
EGRPEDPVEVAIYQPSGGQYIHFYREPTDSKQFKQDSKHSHGIDLTDLFRAQPGLTSA
VLANLPTGMVLTCQGSEDIRKLLDSQGRKDIKLIDVMMSKIDARKFENEVWDEQKSLC
NMHTGIVTEKKKRGGKQEITPHCALLDCIMFEAAVQGVYKCPKLVCLLPNDLVFRTSA
PKVTGAWGPIVQRFHTVGFPGCLYRPQ"
misc_feature complement(2259..3257)
/gene="NP"
/locus_tag="D1P92_sSgp2"
/note="Arenavirus nucleocapsid N-terminal domain; Region:
Arena_nucleocap; pfam00843"
/db_xref="CDD:334282"
misc_feature complement(1632..2162)
/gene="NP"
/locus_tag="D1P92_sSgp2"
/note="Arenavirus nucleocapsid C-terminal domain; Region:
Arena_ncap_C; pfam17290"
/db_xref="CDD:407402"
ORIGIN
1 taggcatttt gttgcgctca attctgagac tgttatttgt gtgtgataac ttccaagatg
61 ggtcaaattg tgaccctctt ccaaagtctt ccacacatca tagatgaagt gatcaacatt
121 gtgttaatca ctctgtcagt gattgcaatt cttaaaagtg tttacaacct agccacctgc
181 gggattctgc agttggtttg ttttctccta ttgtgtggga ggtcatgttc tgttatgatg
241 gatcaattca acctaactag tgttgaattg gacatgaatg tcttaaacct gaccatgccc
301 ctttcatgca gcagaaacaa cagccaccat tacatctttg ttggcaacag tagcggtttg
361 gaactcacat tgacaaacac ctctttgttg aatcataaat tttgcaacct ttctgacgct
421 cacaggaggg cagaatatga cgtggctttg atgtctattg tctctacctt tcacctctct
481 ataccgaatt tcaatcagta tgaggccatg agctgtgatt ttaatggcgg caagattact
541 gttcagtata atttgagtca tgaaagtgcc ctagatgctg caaaccactg tggaacagtt
601 gccaatggta tcctagaaac atttcataag ttcttttggt caaataacat taaggacgcc
661 tatcaattac caaatcaagg aaagctggca cattgttact ccacctctta tcagtttcta
721 atcatacaga acacaacttg ggaggatcat tgcagtttta gtaggcccac tccattaggt
781 tatctgtcac tattgggtaa cagagtaaaa caaatataca tctctaggag actcttggga
841 acctttactt ggacactgac cgattcctct gggtcagagt tgcctggagg ctattgtcta
901 agcaagtgga tgctgattgc tgctgaaatg aaatgctttg gtaacactgc tattgctaaa
961 tgcaatgaaa agcatgattc tgagttctgt gatatgttga ggctgtttga cttcaacaga
1021 gaagcaatta aaaggcttag gattgaagcc aataaaagtt taaacctaat cacaaaagct
1081 gtcaattcat taataaatga tcaactcatt atgaggaacc acttgaggga tttgatgggc
1141 atcccgtact gcaattacac aaaattttgg tatctcaata acacaaggac aggtcaagtc
1201 agtctaccgc aatgctggtt gatcactaat ggatcgtatt tgaacaaaac agagttcaca
1261 aatgatatag aacgtgaggc aaacaatcta gtaactgaaa tgctccagaa agagtacaca
1321 gaaaggcaag ggaaaacgcc tctcggtcta gtcgacatct tcattttctc aacaagcttt
1381 tacctaatta cagtcttttt acacttggta aaaataccta cacaccgaca ccttgttggc
1441 gccccatgcc caaagccaca caggctgaat tcaatggcca tctgtcattg tggtctgtat
1501 aaacagcctg gaaagcccac agtgtggaag cgttgaacaa tagggcccca agcccccgtg
1561 actttcggtg cgcttgttct gaaaactagg tcatttggta atagacagac aagtttgggg
1621 catttgtata caccttgaac tgctgcttca aacataatgc aatccagcag tgcacaatgc
1681 ggtgtaatct cctgcttgcc ccccctcttc ttcttctcgg tgacaatccc ggtgtgcatg
1741 ttgcagagcg acttttgttc atcccacact tcattctcaa atttgcgtgc atctattttg
1801 ctcatcatga catcaattaa tttgatgtcc ttcctacctt ggctatccag gagcttacgt
1861 atgtcttctg atccttgaca tgtcagcacc attcctgttg gcaggtttgc taagacagca
1921 ctcgttagcc ctggttgtgc tctaaacagg tcagttaagt caattccgtg tgagtgcttt
1981 gagtcttgtt tgaattgctt agagtccgtt ggctctcgat agaaatgaat gtactgtcct
2041 ccagaaggtt gatagatggc cacctcaaca ggatcctcag gtctcccttc gatatctatc
2101 catgttttgg cattaggatc caaggaggcc atcatatctt ttaagcacat aaactgagag
2161 tatgtgaggc cagctggttg ttgaagacca ggcaccttta gcctatcatt cagactagga
2221 tggtttggct ggtcctttgg accattacca cccttgttca ggtccacgac agtgttatcc
2281 caagctctgc caatgattgc agtcctacta gaaatgtatg gccagccatt acctgatagg
2341 cacaacttgt aaaggagatt ctcataaggg tttctatctc ctggtgtgtc ggacacaaac
2401 atgccgaggg atctcttcac attgagtgtc tttttaagaa tcccgtcaat gttttgagga
2461 gtaatcttaa tagtctctaa catgttccct ccatccaaca tacaagctcc tgcttttaca
2521 gcagcagaca agctaaagtt gtagcctgat acattcaatc ctgatttgct gatgtcaatt
2581 attgttaaaa ttggatgctc cttgctgagt tggtccaagt cagatgagtt tgggtatttt
2641 gcagtgtaga ttaaacctag atcattgagg gcttggacaa catcattgag gtcagattga
2701 ccctgcttag ccatgcatgc cattgtcaga ctgggcattg taccgaattg attgttgagg
2761 agctctggat ttctcacatc ccataatctc acaacaccat caggccctgc acgaatgttg
2821 ggttttgcca tccccaccat ctcaagaagt ctttttcttt gttctaattg ctgtgatgtc
2881 aggtttccca tgtagatgcc tgttgactga ggtctctcgg ttctcaggat cttgttcttt
2941 aatctatcta tatcagcagc tagaaccagc aaatcgtcgg atgaaagctg cccaacagtc
3001 aggatgtttt tttgctgttg agacttgagt tccaccaaat tattgacagc ttggtttaaa
3061 tctcttaacc tcttcaaatc attgtcatct ctcctgtcct tcctcataag cctttgcaca
3121 ttgctgacct ctgagaagtc caagctatgt aataggcttt gagcatcttt aatcacttgt
3181 agtttgacat tggtacagta tggtgccaat tctctcctta gagattgagt ccattggaag
3241 gacttcacct ctttggagtt actcatattg caaaggtttt ccaattgcgc aatctaattg
3301 cctaggatcc actgtgcgca ctgcccgttt ttacaaccaa ggat
//
