LOCUS       NC_038406               1760 bp    DNA     circular VRL 24-AUG-2018
DEFINITION  Cyclovirus NGchicken8/NGA/2009 isolate NGchicken8, complete genome.
ACCESSION   NC_038406
VERSION     NC_038406.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Cyclovirus NGchicken8/NGA/2009
  ORGANISM  Cyclovirus NGchicken8/NGA/2009
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus
            adie.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Li,L., Shan,T., Soji,O.B., Alam,M.M., Kunz,T.H., Zaidi,S.Z. and
            Delwart,E.
  TITLE     Possible cross-species transmission of circoviruses and
            cycloviruses among farm animals
  JOURNAL   J. Gen. Virol. 92 (PT 4), 768-772 (2011)
   PUBMED   21177928
REFERENCE   2  (bases 1 to 1760)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2018) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1760)
  AUTHORS   Li,L. and Delwart,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2010) Blood Systems Research Institute,
            University of California, San Francisco, 270 Masonic Ave, San
            Francisco, CA 94118, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to HQ738643.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Cyclovirus NGchicken8/NGA/2009"
                     /mol_type="genomic DNA"
                     /isolate="NGchicken8"
                     /isolation_source="muscle"
                     /host="chicken"
                     /db_xref="taxon:942036"
                     /country="Nigeria"
                     /collection_date="2009"
     gene            1..837
                     /locus_tag="D1Q29_gp1"
                     /db_xref="GeneID:37617141"
     CDS             1..837
                     /locus_tag="D1Q29_gp1"
                     /note="putative replication-associated protein"
                     /codon_start=1
                     /product="Rep protein"
                     /protein_id="YP_009506305.1"
                     /db_xref="GeneID:37617141"
                     /translation="MPRQTVRRFVFTWNNYPIEAYDKCEKYLTKFCKYGIVGEEIAPE
                     TGTPHLQGFCNLHKPTRFSTIKKHLDNSIHIEKANGSDIDNQKYCSKSGIFFETGQPS
                     KQGQRSDLAVVSNKILEGSTTIRDIATQHPETYIRYFRGIRELQRLVNPISPRDFPTQ
                     VYYYYGPPGTGKSRTALEEAKKIDPTSIYYKPRGLWWDGYTNQKCVIIDDFYGWIKYD
                     ELLKICDRYPYKVQIKGGFEEFNSTHIWITSNVDTDLLYKFTGYCNAAFERRITIKKY
                     FA"
     misc_feature    16..273
                     /locus_tag="D1Q29_gp1"
                     /note="Putative viral replication protein; Region:
                     Viral_Rep; pfam02407"
                     /db_xref="CDD:280553"
     misc_feature    487..750
                     /locus_tag="D1Q29_gp1"
                     /note="RNA helicase; Region: RNA_helicase; pfam00910"
                     /db_xref="CDD:425942"
     gene            complement(834..1502)
                     /locus_tag="D1Q29_gp2"
                     /db_xref="GeneID:37617140"
     CDS             complement(834..1502)
                     /locus_tag="D1Q29_gp2"
                     /note="putative capsid protein"
                     /codon_start=1
                     /product="Cap protein"
                     /protein_id="YP_009506306.1"
                     /db_xref="GeneID:37617140"
                     /translation="MAYRRVRKYRRRIRRPLRKYRRRFRRIRKGRYSKPGNLYAKFTR
                     IHTIVVQNELNTTWDCSFQLGQFSEWTRIGSNFEMTKVNKVVVKVIPMQNVSNNSTSS
                     VPSYCIYPWHYGVPIPKDFGTLLSVDKAKIRPQTVPLTMSFVPNTISPAQNTSSNEFT
                     APVINWKPTVQWTTTAQDQPLIRCGALGFQGDPSATGRSTRFNIVTNVYVEMKNQSII
                     NGLS"
ORIGIN      
        1 atgcctcggc aaacagtcag acgtttcgtg ttcacttgga acaactatcc tatcgaagca
       61 tacgacaagt gcgaaaaata tctcaccaaa ttttgcaaat atggcatcgt tggagaagaa
      121 atcgctccgg aaacagggac gcctcaccta caggggtttt gtaacctaca taaacccaca
      181 cgctttagta ccatcaagaa gcatctcgat aactcaatcc atattgagaa ggcaaatgga
      241 tccgacattg acaaccaaaa atactgtagt aagtcaggca tcttttttga aacgggacag
      301 ccctctaaac aaggacagag gtcggacctt gctgtcgtta gtaacaaaat cttggaagga
      361 agtactacaa tacgagatat tgccacccaa catcctgaaa cgtacatcag atactttcgc
      421 ggcattcgag aactacaacg attggtcaac ccgatctctc ctcgagactt tcccacacaa
      481 gtatattact actacggtcc gccaggaaca ggtaaatcca gaactgcttt ggaagaagca
      541 aaaaaaattg atccgacttc catctactat aaaccacgag gtctgtggtg ggacggctat
      601 acaaaccaga aatgtgttat tattgacgac ttctacggat ggataaaata cgacgaacta
      661 ctaaaaattt gcgaccgtta tccttacaaa gtacaaataa aagggggatt cgaagaattc
      721 aacagcacac acatctggat tacttcaaac gtcgatacag atttattgta taaatttaca
      781 ggatattgta acgctgcatt tgaacgtcgt attacaataa aaaaatattt tgcttaagac
      841 agtccattta ttatagattg attcttcatt tccacataaa cattagtaac tatattaaac
      901 cgcgtactcc gaccagttgc tgagggatca ccctgaaatc ctaaagcgcc acagcgaatc
      961 aaaggctgat cttgtgcagt tgtagtccat tgaacggtag gcttccaatt aatcactgga
     1021 gcggtaaact cattcgacga agtattttga gctggggata tagtattcgg cacaaaactc
     1081 atagtcaacg gaacagtttg tggacgaatc ttggctttat ccacacttaa cagcgttcca
     1141 aaatctttag gaataggtac cccgtaatgc caagggtaaa tacaatacga aggcacagag
     1201 gacgtactat tgtttgacac attctgcatt ggaataactt ttacaactac tttattaact
     1261 tttgtcatct cgaaattact tccgatacga gtccactcag aaaactgacc cagttgaaac
     1321 gaacaatccc acgtagtatt aagttcattc tgaacaacaa tcgtatgaat tcgcgtaaat
     1381 ttagcataca gatttccagg tttcgaatac cggcctttac gtatcctacg aaatcggcga
     1441 cggtacttcc gcaacggtcg ccgaatgcgg cgacgatact ttctaactcg acgatacgcc
     1501 atatgtagag ggggagcttc cctcgctacc gctcgggaca aatataaccc cccttctaac
     1561 aaccggtttc aacatgcttt gggtagcgct cccccagctc gcccccccgc cccccccccc
     1621 tccggtacgc tccggggggg gggcgtcgcg ccgctgtggc gcgtgcgcgt ggaaacgtgt
     1681 tcaaggctga aagtgaaagg tggttacaaa gttgggttac gaagtggcgg gtaatactaa
     1741 gccgccactt cgttgtaacc
//