LOCUS NC_038513 3908 bp ss-RNA linear VRL 04-JUN-2019
DEFINITION Laibin virus strain BT20 segment M, complete sequence.
ACCESSION NC_038513
VERSION NC_038513.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Laibin virus
ORGANISM Laibin virus
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Ellioviricetes; Bunyavirales; Hantaviridae;
Mammantavirinae; Mobatvirus; Mobatvirus laibinense.
REFERENCE 1 (bases 1 to 3908)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-JUN-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KM102248.
GenBank Accession Numbers KM102247-KM102249 represent the complete
genome of Laibin virus.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3908
/organism="Laibin virus"
/mol_type="genomic RNA"
/strain="BT20"
/isolation_source="lung"
/host="Taphozous melanopogon"
/db_xref="taxon:1633187"
/segment="M"
/country="China: Guangxi Province"
/collection_date="2012"
/identified_by="Lin Xu"
gene 21..3404
/locus_tag="D1R34_sMgp1"
/db_xref="GeneID:37618197"
CDS 21..3404
/locus_tag="D1R34_sMgp1"
/note="GP"
/codon_start=1
/product="glycoprotein"
/protein_id="YP_009507250.1"
/db_xref="GeneID:37618197"
/translation="MKHIILSLLLGIVKAKTTNDIHFQCPHSPRQDTGFSYSQLDLPV
TTVLSAKSMTIESSCPFELYQTRKTIFDVTIIGWQKKTSTTTGTNAAATTYEISESED
KLVGLCILPPGIPNKLLYGRKALTCIELSCNQTACLPVLHILVPQQVCISVRSCLLTW
GEIKINLYFERTFCPNGLIVAGECFQPFYGSVAQLQSLDIMQISVTCFLIVETAQTTK
VSEFLEQTAKATSCSTNDFYSSYVCFLAGYSLYITVPHMGDQLSLDIASAMILNPYGE
DHDRPGHGEGTFRVAGELDAKVPSTGTDSIKGIALSGQILYTSLFILPKKVSAKVHNV
LTKGYLPKVNHSVCDNKVLPLIWKGLVHVPGHIERLEPCKVFCTLSGPGALCEAFSST
GIFNISSPTCLIGKLHKYKELEDHITFICQRIDSDIVIYCNGQRKVIKTKTLVIGQCI
YSITSFFSLLPSIAHSLAVEVCVQGFHGWASLCLIITFCFGWILIPSLTWLTLQIIRG
IMILMNKHTGESRIKFILEKIKSEFHNTVGNTTCGVCTKECSCSEELKAHNEFCPSGN
CPYCMKDLHPSSHVLTEHYKQCPLIDRYVSKVKDALKVPNQTTMCYRRLGTFRYKNRC
YILIVWLIMLTIEILCWAASAQQIEVKPEWQDTAHGVGYIPLSLDYEIDFSLASGSSY
VHKRVLVDPSDENKKVPFTVHISSQQIVASVQHLGHWMDGEVNIKSVFHCYGECKKYT
YPWQFASCQSEIDYQYETSWGCNPADCPGVGTGCTACGIFLDKLTPKASVYKIVNLKY
MRTVSYQVGTEQQTKEIDTSDCLSSNHAKVCMIGTVSNIQIGDTLVFFGPIAGGAVLV
RQWCASNCQLGDPGDIMIMNADLKCPDFSGTMHKRCQFATEPLCYYQGNLLSGYKKMH
QTIDSFISLNMSDPKLIANNLMWSDPDGIYKDHVNIVVNKELPFEDLAENPCVVDLSV
SSIEGSWGSGVGFRLTCLVSLTECTSFLTTIKACDKAMCYGGKVASLSRGQNTIIVQG
RGGHSGSSFKCCHDHSCSKNAKKASAPHLERVSGENTKLSEIFSDGAPECGILCRMEK
IGEWLGGLFRGNWWVLLVLVGITILSILLLSMLCPAHRK"
misc_feature 78..1637
/locus_tag="D1R34_sMgp1"
/note="Hantavirus glycoprotein G1; Region: Hanta_G1;
pfam01567"
/db_xref="CDD:279853"
misc_feature 1830..1943
/locus_tag="D1R34_sMgp1"
/note="Immunoreceptor tyrosine-based activation motif;
Region: ITAM_Cys-rich; pfam10538"
/db_xref="CDD:431345"
misc_feature 1968..3308
/locus_tag="D1R34_sMgp1"
/note="Hantavirus glycoprotein G2; Region: Hanta_G2;
pfam01561"
/db_xref="CDD:426324"
ORIGIN
1 tagtagtaga ctccgcaaaa atgaagcaca tcatcttgag cctactactg gggattgtca
61 aagcaaaaac aaccaatgac attcattttc aatgcccaca tagcccgaga caagatacag
121 gtttttcata tagtcagctt gatctccctg ttacgactgt actgtcagct aagtctatga
181 caatagaaag cagctgccca tttgaattgt atcagacacg caaaacaata tttgacgtaa
241 ctataatagg atggcaaaag aaaacatcca ctacaacagg cacaaatgcg gctgcaacaa
301 catatgaaat ttctgaatct gaagataagc ttgtagggct ctgtatactc ccaccaggaa
361 tacccaataa attactttat ggaaggaaag ccttaacatg tattgagctt tcatgtaatc
421 aaacagcatg cttacctgta cttcatatcc ttgttccgca gcaggtatgt attagtgtaa
481 ggtcatgctt attaacatgg ggtgaaataa aaattaatct ctactttgaa aggacatttt
541 gtccgaatgg cttaattgtt gcaggagagt gctttcaacc attttatggc tctgttgcac
601 aactacagtc tttagatata atgcagatat cagtcacatg ttttcttata gtagagactg
661 cacaaacaac aaaagtgtct gaatttttag aacaaactgc aaaggctaca tcatgctcta
721 ctaatgattt ttatagctct tatgtctgtt ttctagcagg ttattctctc tatataacag
781 taccacatat gggtgatcaa ttatcacttg atatagcttc agccatgata ctcaaccctt
841 atggtgaaga ccatgataga cctggacatg gtgaaggcac atttcgtgtt gcaggggaat
901 tagatgcaaa agtgccctcg actgggacag attcaataaa gggtattgca ctttctggtc
961 aaattttgta cacttcctta ttcattcttc caaagaaagt atctgctaaa gtgcataatg
1021 ttcttactaa aggctattta ccaaaggtga atcattctgt ttgtgataat aaggtacttc
1081 ctttaatatg gaaagggctt gtacatgtcc cggggcacat tgaacggcta gagccctgta
1141 aagtattttg tacattgtca ggcccggggg cattatgtga ggcattttca tccacaggaa
1201 tcttcaatat atcatcacct acttgtttga ttggtaaatt gcacaagtat aaagaattag
1261 aagatcatat tacttttatc tgtcaaagaa ttgattctga tatagttatt tattgcaatg
1321 ggcaaagaaa agtaattaag acaaaaacac ttgtaatagg acaatgtatt tattcaatca
1381 caagcttttt ttcgctgttg ccatctattg cacattctct agctgttgaa gtgtgtgttc
1441 aaggatttca tggttgggca agcttgtgct taattatcac attttgtttt ggttggatat
1501 tgataccttc cttaacatgg ttgacactgc aaataattcg gggcataatg atactgatga
1561 acaagcatac aggtgaatct aggattaaat ttatcttaga gaaaataaag agtgaattcc
1621 ataacacagt aggtaatact acatgtggcg tctgtacaaa agagtgttca tgttcagagg
1681 aattaaaagc ccataatgaa ttttgcccct caggtaattg tccatactgc atgaaagacc
1741 ttcatccaag tagccatgtg ttaacagaac attataaaca atgcccctta attgatagat
1801 atgtatcaaa agttaaagat gcattgaaag ttcctaacca gacaacaatg tgttatagaa
1861 gattgggaac attcagatat aaaaatcgtt gttatatatt gatagtatgg ttgatcatgt
1921 taacaattga aattctttgt tgggctgcaa gtgctcaaca gattgaggta aaacctgaat
1981 ggcaggatac agctcatgga gtgggttata tccctctcag ccttgattat gaaattgatt
2041 tctctcttgc ttctgggtca tcatatgtac ataagcgagt gctagttgac ccatctgatg
2101 agaataaaaa agtaccattt actgtacaca taagctcaca acaaattgtg gctagtgttc
2161 aacatcttgg ccattggatg gatggagaag taaatataaa atcagtcttt cactgttatg
2221 gagagtgtaa aaagtatacc tatccttggc aatttgccag ttgtcaaagt gaaatagatt
2281 atcagtacga aactagttgg ggctgtaatc ctgctgactg tcctggagtt gggacaggtt
2341 gtactgcatg tggaattttc cttgataaat taacacctaa ggctagtgta tataaaattg
2401 tgaacttaaa atatatgaga acagtttctt atcaggtagg cacagaacaa caaacaaaag
2461 aaatcgatac aagtgattgt ttaagtagta accatgctaa ggtatgtatg attggaacag
2521 tatcaaacat acaaattggt gacacacttg ttttctttgg accaattgca ggtggtgcag
2581 ttctagtgcg tcaatggtgt gcatcgaact gccaattagg tgacccgggt gacataatga
2641 taatgaatgc tgatcttaag tgccctgatt tttctggaac tatgcataaa cgttgtcaat
2701 ttgcaactga accactttgc tattaccaag ggaatctttt atcaggttac aaaaaaatgc
2761 atcaaacaat agattcattt attagtctca atatgtcaga tcctaagctg atagctaata
2821 acttaatgtg gtcagaccca gatggaatat ataaagatca cgtgaacatt gtagtaaata
2881 aagagttgcc ctttgaagac ttagctgaga acccatgtgt tgttgattta tctgtttcat
2941 ctatagaagg ttcatggggc tcaggagtag gatttagatt gacctgctta gtttcattaa
3001 cagagtgcac ttctttttta acaactatta aagcatgtga taaagctatg tgttatggag
3061 gaaaggttgc aagtttaagt agaggtcaaa acacaataat tgtacaaggt aggggaggtc
3121 atagcggttc ttcattcaag tgttgccatg accacagctg ttcaaagaat gcaaagaaag
3181 catctgcacc tcatttagaa agagtttctg gcgaaaacac aaaattaagt gaaatctttt
3241 cagacggtgc acctgagtgt ggtatattgt gccgaatgga aaagataggg gaatggcttg
3301 gtggtctgtt tcgtggtaat tggtgggtgt tattggtatt agtaggaata acaattttat
3361 ctatattatt attaagtatg ctgtgccctg ctcatagaaa ataagaagtt aaactgtata
3421 attaaattat taaatattta ttagagctaa gattatagag ttagtgataa gttagtagta
3481 agtcaagttg gtagattatt aagaaatata ttctaggtat atatacaaga aaacagttat
3541 attcatatta gatagtcaag tattaagtag gtatgcaaag cattagtacc aatagttaag
3601 tgataagaaa aaatatataa tcaatattag acaatacaaa atttaggtat agttgaatac
3661 ataagataat tataacactt tattatttag ttatcataat cattagcaga aaataaacaa
3721 tatcattaat accattaagt ctattaatat attaatattt aaatatttat atatttatat
3781 atttattact aatatatata ttattactaa taaataacaa tataataata ctattatatt
3841 ctttacttat tcatataact tattactaga tttttgtggg acttttgttc ctgcggagca
3901 tactacta
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