LOCUS NC_038524 7226 bp DNA circular VRL 24-AUG-2018
DEFINITION Human papillomavirus type 175 isolate SE87, complete genome.
ACCESSION NC_038524
VERSION NC_038524.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Human papillomavirus 175
ORGANISM Human papillomavirus 175
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Papovaviricetes; Zurhausenvirales; Papillomaviridae;
Firstpapillomavirinae; Gammapapillomavirus; Gammapapillomavirus 23.
REFERENCE 1 (bases 1 to 7226)
AUTHORS Johansson,H., Bzhalava,D., Ekstrom,J., Hultin,E., Dillner,J. and
Forslund,O.
TITLE Metagenomic sequencing of 'HPV-negative' condylomas detects novel
putative HPV types
JOURNAL Virology 440 (1), 1-7 (2013)
PUBMED 23522725
REFERENCE 2 (bases 1 to 7226)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-AUG-2018) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 7226)
AUTHORS Johansson,H., Bzhalava,D., Ekstrom,J., Hultin,E., Dillner,J. and
Forslund,O.
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2012) Department of Laboratory Medicine, Lund
University, Jan Waldenstroms gata 59, Malmo 205, Sweden
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KC108721.
##Assembly-Data-START##
Assembly Method :: Celera v. 7
Sequencing Technology :: 454
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..7226
/organism="Human papillomavirus 175"
/mol_type="genomic DNA"
/isolate="SE87"
/isolation_source="swab of genital wart from a Swedish 30
year old male"
/host="Homo sapiens"
/db_xref="taxon:1434782"
/country="Sweden"
/collection_date="2009"
/type="175"
gene 1..444
/gene="E6"
/locus_tag="D1R44_gp1"
/db_xref="GeneID:37618269"
CDS 1..444
/gene="E6"
/locus_tag="D1R44_gp1"
/codon_start=1
/product="E6"
/protein_id="YP_009507304.1"
/db_xref="GeneID:37618269"
/translation="MERLLPHNLEDYCRVFAISFFEIRMPCLFCKFTVPTVDLASFHC
KQLRLVWRDSACFACCGKCIRLLAKHEFDHYCICVCKGTTLEHLCKKDLASVIVRCVE
CLSLLDFAEKLYCDRKGLPFYLVRTHWRNCCRNCLRKDDWEQCEY"
misc_feature 79..408
/gene="E6"
/locus_tag="D1R44_gp1"
/note="Early Protein (E6); Region: E6; cl27673"
/db_xref="CDD:452769"
gene 419..712
/gene="E7"
/locus_tag="D1R44_gp2"
/db_xref="GeneID:37618263"
CDS 419..712
/gene="E7"
/locus_tag="D1R44_gp2"
/codon_start=1
/product="E7"
/protein_id="YP_009507305.1"
/db_xref="GeneID:37618263"
/translation="MIGNSVNIRDIELNLEALVLPENLLSDESLSPDLVPEEEEQQAY
RVDTCCSTCGTGVRLSVLATRSAIRTLEGLLLQELSLFCPQCSRLHLQHGRSR"
misc_feature 425..676
/gene="E7"
/locus_tag="D1R44_gp2"
/note="E7 protein, Early protein; Region: E7; cl02891"
/db_xref="CDD:295537"
gene 696..2519
/gene="E1"
/locus_tag="D1R44_gp3"
/db_xref="GeneID:37618264"
CDS 696..2519
/gene="E1"
/locus_tag="D1R44_gp3"
/codon_start=1
/product="E1"
/protein_id="YP_009507306.1"
/db_xref="GeneID:37618264"
/translation="MGDPDKGTDINTFDALEGGSDWYLVSQAECSIDTIEDLFETSTD
SVSCISNLIDDDEVDQGNSLALFNELLTEDSNRAVADLKRKFRSSPPEAVESLSPRLE
AVHITPEKAFKRRLFHDSGIEQDETENLTEKVVESIQETESIDNVQEQPDCIELFKSN
NWKATLLYKLKEQFGISFNELTRSFKSNRTCSETWIVAAYNAREETLEASKIQLQQHC
EFFQVIIYGFCGLYLCVFKSAKCRETVEKLFIAILGVAAMQLLSEPPRTRSAAVALYF
FQKSLTNSSFKFGDFPDWIRKHTQLNHETAAAADTFELAEMVQWCYDNNYTEEPIIAY
RYAMHADVDKNAAAFLKSNHQAKYVKDACIMVKYYKLQEMREMTMSEWIWKCCDECKD
DGNWKTIAMLFRYQHVNFLSFLCALRALFKQIPKKNCLVFYGPSDTGKSYFCNTLIRF
LKGSVVSFMNRQSHFWLQNLINTKIGFLDDATLPCWLFMDTNMRNALDGTPVCLDAKH
KAPTQIRLPPLLITTNVCVENEPSLKYLKTRLTIFTFPNPLPFNPDGSLVYEITNETW
ASFFRKLGMQIDLTPKEDIQDESGRPDKAFRCTTRETIESL"
misc_feature 699..2516
/gene="E1"
/locus_tag="D1R44_gp3"
/note="E1; Provisional; Region: PHA02774"
/db_xref="CDD:222927"
gene 2455..3666
/gene="E2"
/locus_tag="D1R44_gp4"
/db_xref="GeneID:37618265"
CDS 2455..3666
/gene="E2"
/locus_tag="D1R44_gp4"
/codon_start=1
/product="E2"
/protein_id="YP_009507307.1"
/db_xref="GeneID:37618265"
/translation="MNQADLTRRSDALQERLLNLYESGAKTVEAQIEHWQLVRKINVL
YYYARQEGYSHLGLQPLPSLQVSEYKSKEAIHLVLLLRSLQNSPYADEEWSLSDTSTE
IIYTPPRNTFKKGAYRVDVWFDNNIDNSFPYTNYDYIYYQDPNDQWHKTEGLVDINGF
YYEEGNGNRTYYFLFESDAARYGETGQWTVQFKNQTLSTSIPSSHRPHSTISSQGSVS
SSSDSVSPPQSLPPRRHTRSHESEEGSASSTTGTPPQTPVRQRRRRREGEPTSTTREA
PRNKRQRRARAVVGAGVSAGEVGSGHRTVPATGLTGLARLEAEARDPLIAIFKGRSNQ
LKCWRYRIPKNLYTQATTVFRWAGEEEDVSYASHRMLVAFQNQAQRKQFLSSVSIPRG
ILYAYGHLDSL"
misc_feature 2470..3048
/gene="E2"
/locus_tag="D1R44_gp4"
/note="E2 (early) protein, N terminal; Region: PPV_E2_N;
pfam00508"
/db_xref="CDD:278909"
misc_feature 3421..3654
/gene="E2"
/locus_tag="D1R44_gp4"
/note="E2 (early) protein, C terminal; Region: PPV_E2_C;
pfam00511"
/db_xref="CDD:395411"
gene 2927..3427
/gene="E4"
/locus_tag="D1R44_gp5"
/db_xref="GeneID:37618266"
CDS 2927..3427
/gene="E4"
/locus_tag="D1R44_gp5"
/codon_start=1
/product="E4"
/protein_id="YP_009507308.1"
/db_xref="GeneID:37618266"
/translation="MVFIMRKVMEIEHTIFCLNQTQQGMEKLDNGLCSLKIKLFLPLY
LAHTGRTPLFPPKGLSAPPATPFPHRRASHPGGIQDPTKAKREALVAPPGPRRRLQFD
NDDDDEKENQRPPPEKLPETRDNDEPERWSVLGYLLEKWEADIERFQQQVLQDLQDLK
LKLGIH"
misc_feature 2957..>3307
/gene="E4"
/locus_tag="D1R44_gp5"
/note="E4 protein; Provisional; Region: PHA03419"
/db_xref="CDD:223079"
gene 3675..5216
/gene="L2"
/locus_tag="D1R44_gp6"
/db_xref="GeneID:37618267"
CDS 3675..5216
/gene="L2"
/locus_tag="D1R44_gp6"
/codon_start=1
/product="L2"
/protein_id="YP_009507309.1"
/db_xref="GeneID:37618267"
/translation="MNPSKRAKRDTVDNLYRQCQLGADCPPDVRNKVEATTLADKLLQ
AFGSIIFLGGLGIGSGSGSGTVTAGRAIPEVVPEITAPAPEPVRPLRPTNPRNTTRPF
SVPLDRIGVPGSGGRPVTIDASSSSIVPLSDPIPDTVITLGDPTVGVTTNIAVDVNPI
ELETITTTTNRPAIINVTPIEPPPVRVVYSENPSFTPLDTLYTTRVEPNVNVFVDPTS
LGEHIGLEEIELETLGGPETFEIEESGPSTSTPIERLQRVYARARQFYQRHVEQVPTR
NLDFLGQPSRAILFGYDNPAFTDDITLEFQQDLQEVAAAPDEAFRDIRTLSRPTFTLT
NEGTIRLSRLGTRGTMQTRSGRVVGQTAHFYYDVSSIPEAGEIEMQDLVTPGVPHTIV
NPQAESSFIDALAESAVFNETDLIDPYNESFDNAQLILEAQPETDDWIAHPTFIPTEY
TTPLIADIGDGLFYSAPTNMSENTHISFPSTPIMPGVTIDIYSIDYDIHPSLLKRKRK
RIDYV"
misc_feature 3687..5201
/gene="L2"
/locus_tag="D1R44_gp6"
/note="Late Protein L2; Region: Late_protein_L2; cl28153"
/db_xref="CDD:332973"
gene 5227..6741
/gene="L1"
/locus_tag="D1R44_gp7"
/db_xref="GeneID:37618268"
CDS 5227..6741
/gene="L1"
/locus_tag="D1R44_gp7"
/codon_start=1
/product="L1"
/protein_id="YP_009507310.1"
/db_xref="GeneID:37618268"
/translation="MALWLQTRGNLYLPPSKPVATVMSTDDYVIPTNMYFHGGTDRML
IVGHPYHDVTDGIDSNKLLVPKCSGNQFRVIRLLFPDPNKFAIADKSIFNPEKERLVW
RLEGIEIGRGGPLGIGLTGNPLFNKYADVENIKQNPAPQQDEDYRVDVAMDPKQIQLF
XVGCSPPTGEHWDVADRCPNDKPDAGSCPPIQLVTSIIEDGDMVDIGFGNCNFKTLQQ
DKAGTPLELTNEKCKWPDFLKMEKDTYGDQMFFCGRKEQMYSRHMLARAGIDGDHVPE
TLYHSPVNKVNGLAPYTYFPTTSGSLVTSDNQLFNRPYWLHNSQGANNGICWENQLFV
TVVDNTRNTNFNISVYKENGGIPNEYQYKAKDFKNYVRHTEEYELEVILQLYKVPLNP
EVLSHINVMNPDILENWELSFVPPPPEGIQDSYRYLLSKATKCPPDAAEIAKKDPWGQ
YAFWTMDLSERLSSELSQFALGKKFLYQTGMLRKKRVRTDGISSKRSAKRKRTK"
misc_feature 5227..6738
/gene="L1"
/locus_tag="D1R44_gp7"
/note="major capsid L1 protein; Provisional; Region:
PHA02778"
/db_xref="CDD:222928"
ORIGIN
1 atggaacgct tgttgccaca caatttagag gattattgcc gtgtgtttgc tatatctttt
61 tttgaaattc gcatgccatg tttgttctgt aaatttactg tacctactgt tgatttagct
121 agctttcatt gtaaacagct gcgtttagtg tggagggatt ctgcatgttt tgcatgttgt
181 ggtaaatgta tacgcttgct cgctaaacac gaatttgatc attattgtat ttgtgtttgt
241 aaagggacaa cattagaaca tttgtgtaaa aaggatttag cttctgttat tgttagatgt
301 gttgaatgtc tatctttact agattttgct gaaaaacttt attgtgaccg taaggggtta
361 ccattttatc tggttcgaac gcattggaga aattgttgta gaaattgttt acgaaaggat
421 gattgggaac agtgtgaata ttagagacat agaacttaat ttagaagcat tagtcctccc
481 agagaatttg ttgagtgacg aatctttgtc acccgatttg gtacctgaag aggaggagca
541 acaggcttat agagttgaca cctgttgtag tacttgtgga acaggtgtcc gtctctctgt
601 tttggccaca aggtcagcca tccgtacctt agaaggacta ctgcttcaag aattaagttt
661 attttgtcca cagtgttcca gactccattt gcaacatggg agatcccgat aaaggtactg
721 acattaatac atttgatgct ttagaaggtg gtagtgattg gtacctggta tcccaggctg
781 aatgtagtat agatacaata gaagatctct ttgaaaccag tacagattct gtgtcttgta
841 tctctaacct tatagatgat gatgaggtag atcagggaaa ttccctggca ttattcaatg
901 aactgttaac tgaagacagt aatagagctg tagcagatct aaaacgaaag ttcagaagca
961 gtcctccgga ggcagtggaa agtttaagtc ctagactgga agctgtgcac ataactccag
1021 aaaaagcatt caaaagacgt ttgtttcacg acagtgggat tgaacaagat gaaactgaga
1081 atcttactga gaaggtagta gaatctatac aggagacaga atctattgat aatgtacagg
1141 agcagccaga ttgtattgaa ttgtttaaat ctaataattg gaaggctaca ttactatata
1201 aattaaaaga gcaatttggt atttcattta atgaattaac aaggagcttt aaaagtaata
1261 ggacatgctc agaaacatgg atagtagcgg cttacaatgc tcgagaagaa acattagaag
1321 cttctaaaat tcaattgcag cagcattgcg agttttttca agtaattata tatggatttt
1381 gtgggttata tttatgtgtg tttaaatctg ctaaatgtag agaaacagta gaaaaattat
1441 ttatagctat actaggtgtg gctgcaatgc aattattaag tgaaccacca cgtactcgga
1501 gcgctgcagt agctttatac ttttttcaga aaagcttaac taactcatca tttaagtttg
1561 gagattttcc tgactggatt agaaagcata cacaattaaa tcatgaaaca gctgcagcag
1621 cagatacctt tgaattagca gaaatggttc aatggtgtta tgataacaac tatacagaag
1681 agccaattat tgcttataga tatgcaatgc atgcagatgt agataaaaat gctgcagcct
1741 ttctaaaaag taatcatcag gctaaatatg ttaaagacgc ttgcatcatg gtgaaatatt
1801 ataaactgca ggaaatgaga gaaatgacta tgtcagagtg gatttggaaa tgttgtgatg
1861 agtgtaaaga tgatggaaac tggaaaacaa ttgcaatgtt gtttagatac cagcatgtta
1921 actttttaag tttcttatgt gctttacgag cactatttaa gcaaataccc aagaaaaact
1981 gtttagtatt ttatggtccg tcagacacgg gtaaatcata tttttgtaat acattaatta
2041 gatttttgaa gggcagtgtt gtatctttca tgaataggca aagccatttc tggttgcaaa
2101 atcttattaa tacaaaaata ggttttctag atgatgctac tctgccttgt tggctgttca
2161 tggatactaa catgcgcaat gctttggatg gcacccctgt atgtttggat gcaaaacata
2221 aagccccaac gcaaattaga ttacctcctt tacttattac tactaatgtt tgtgtagaga
2281 atgaaccaag cttaaaatat ttaaaaacaa gactaacaat atttaccttt ccaaatcctt
2341 tgccttttaa tccagatggg tccttagtat atgaaattac taatgagacc tgggcctctt
2401 tttttagaaa acttggaatg cagatagatt tgaccccaaa ggaagatatc caagatgaat
2461 caggccgacc tgacaaggcg ttcagatgca ctacaagaga gactattgaa tctttatgaa
2521 agtggtgcta aaacagtgga agcacaaatt gagcattggc aacttgttag aaaaattaat
2581 gtgctatatt attatgctcg ccaagaaggc tattcccatt tgggtttgca accccttcct
2641 agcttacagg tgtcagaata taagtccaaa gaagctatac atttagtgct attgcttaga
2701 agcttacaaa attcaccata tgctgatgaa gaatggagtc taagtgatac cagtacagaa
2761 ataatttata cacctcccag aaataccttt aaaaaaggag cctatagagt tgatgtctgg
2821 tttgacaata atattgataa cagctttcct tatacaaact atgactatat ctattaccaa
2881 gatccaaatg accaatggca caaaacagaa ggtcttgttg atataaatgg tttttattat
2941 gaggaaggta atggaaatag aacatactat tttctgtttg aatcagacgc agcaaggtat
3001 ggagaaactg gacaatggac tgtgcagttt aaaaatcaaa ctctttctac ctctatacct
3061 agctcacaca ggccgcactc cactatttcc tcccaagggt ctgtcagctc ctccagcgac
3121 tccgtttccc caccgcagag cctcccaccc aggcggcata caagatccca cgaaagcgaa
3181 gagggaagcg ctagtagcac caccgggacc ccgccgcaga ctccagttcg acaacgacga
3241 cgacgacgag aaggagaacc aacgtccacc accagagaag ctcccagaaa caagagacaa
3301 cgacgagcca gagcggtggt cggtgctggg gtatctgctg gagaagtggg aagcggacat
3361 cgaacggttc cagcaacagg tcttacagga cttgcaagac ttgaagctga agctcgggat
3421 ccattgattg caatctttaa aggtcgctca aatcagttaa aatgttggcg ttatagaatt
3481 ccaaaaaatc tttatactca ggcaacaact gtgtttagat gggctgggga agaggaagat
3541 gttagttatg catcacatag aatgcttgta gcatttcaaa atcaggctca gagaaagcag
3601 tttctaagta gtgtgtctat tccaaggggg atactttatg cttatggaca tttggactca
3661 ttataaattg cactatgaat cctagcaagc gtgcaaagcg tgatactgtt gacaatttgt
3721 ataggcaatg tcaattaggg gctgattgtc cacctgatgt aagaaataaa gttgaagcca
3781 caactcttgc tgacaaactt ctgcaagcat ttggaagtat tattttttta gggggtttgg
3841 ggatagggtc tggcagcgga tcgggtactg ttacggcagg tagagcaata cctgaggtag
3901 tgccagaaat aacagcacca gccccagaac ctgtacgacc tttacgacca actaatccta
3961 gaaacaccac acgaccgttt tcggtgccct tggataggat tggggtacct ggttcaggag
4021 gtcgtccagt aacaattgat gcctccagtt cttctatagt tcccttatca gaccctattc
4081 ctgacacggt aataacgtta ggtgatccaa cagttggtgt tactacaaat attgctgtag
4141 atgtaaatcc aatagaattg gaaactataa caacaactac aaatagacca gcaattataa
4201 atgtaactcc catagaaccg ccaccggtac gtgtagtata tagtgaaaat ccttctttta
4261 caccattaga tacactttat acaacccgtg tagagcctaa tgtaaatgtg tttgtggatc
4321 ccacatcttt aggggaacat ataggcctgg aggaaataga attagagact ttgggaggtc
4381 ctgaaacatt tgaaatagaa gaatcaggtc ctagcactag cacacctatt gagaggctgc
4441 aacgtgttta tgccagagcc cgccaatttt atcaaaggca tgtagagcaa gtgcctacaa
4501 gaaatttaga ttttttaggt caaccttccc gcgcaatttt atttggctat gataatcccg
4561 cctttacgga tgacatcact ttagaatttc aacaagactt gcaagaggta gctgctgctc
4621 cagatgaggc atttagagat attcggacat taagtagacc aacattcaca ttaactaatg
4681 aaggtacaat tcgattaagt aggctaggaa cccgagggac catgcaaacc agaagtggtc
4741 gtgtagttgg tcaaactgca catttttatt atgatgtgtc atctattcca gaggctggag
4801 aaatagaaat gcaagaccta gtcacaccag gcgtgccaca cactattgtt aacccacagg
4861 cagaaagtag ttttatagat gcattagctg agtctgctgt ttttaatgag actgacttaa
4921 tagatccata taatgagtct tttgacaatg cacaattaat attagaagct caaccagaga
4981 cagatgattg gattgctcat cccacattta tacctacaga atatactaca ccattaatag
5041 ctgatattgg tgatggttta ttttattcag ctccaaccaa catgtcagaa aatacacata
5101 tatcctttcc aagcacccct ataatgcctg gagtaactat agatatttat tccattgatt
5161 atgatataca cccgtcttta ttaaaaagga aacgcaaacg aatagattat gtttgatgtt
5221 ttgcagatgg cattgtggtt gcagacgcgt ggtaatttat atctacctcc cagcaaacca
5281 gttgcaactg tgatgagtac agatgattat gttattccta ccaatatgta ttttcatgga
5341 ggtactgatc gcatgttaat tgtgggacat ccatatcatg atgttactga tggtattgat
5401 tctaacaagt tattggtacc caaatgttca ggtaatcaat tcagagttat taggttgtta
5461 ttcccagatc ctaataaatt tgcaattgct gataaatcta tatttaatcc tgaaaaggaa
5521 cgtttggtgt ggaggttgga aggtatagaa ataggacgtg ggggaccttt aggcattgga
5581 ttaacaggaa atcctttgtt caataaatat gctgacgtgg agaacattaa gcaaaatcct
5641 gcacctcaac aggatgagga ttacagagta gatgttgcta tggatccaaa acaaattcag
5701 ctttttwttg ttggatgttc cccacccact ggtgagcatt gggacgttgc agatagatgc
5761 cctaatgata aaccagatgc agggtcttgt cccccaattc agttagtgac atctataatt
5821 gaggatggag acatggttga tataggtttt ggaaattgta atttcaagac cttacagcag
5881 gataaagctg gaacaccttt agagttaact aatgaaaagt gtaaatggcc agattttttg
5941 aaaatggaaa aagatacgta tggtgatcaa atgttttttt gtggtagaaa ggaacaaatg
6001 tattccagac atatgttagc cagagcgggt attgatggtg atcatgtgcc agaaacgttg
6061 tatcactcac cagtaaataa ggtaaatggc cttgctccct acacgtattt tccaaccaca
6121 agcggttcct tagttactag tgataatcaa ttatttaata gaccatattg gctgcataat
6181 tcacaaggtg ctaataacgg tatttgctgg gaaaatcagc tatttgtgac tgttgttgat
6241 aacaccagaa ataccaattt caacatttct gtctataagg agaatggagg tattcctaat
6301 gaatatcagt ataaagctaa ggattttaaa aactatgttc gtcatactga agagtatgaa
6361 ttagaggtaa tattacagtt gtataaagtg cctttaaatc cagaggtttt gtcccatata
6421 aatgtaatga atcctgatat acttgagaac tgggaactat cttttgttcc acctcctcct
6481 gaaggaatcc aggactcata cagatacctt ttatctaaag caactaaatg tcctccagat
6541 gctgctgaaa tagctaaaaa ggatccctgg ggacaatatg cattctggac tatggatctg
6601 tctgaaagac tgtcctctga actatctcag tttgcattag gtaaaaagtt tttatatcaa
6661 accggtatgt tacggaaaaa acgtgtaagg accgatggta tatcatcaaa aaggtctgct
6721 aaacgcaagc ggacgaagta atctgtattg gtattgattt ctatgtctgt aagttatgtt
6781 tacatactgt gaatatttgt gaataataaa aattgctatg tgagcaataa tctgactcat
6841 ggggtcaata tttttgccac cgcctccatc ctttaattgc atccttagga cttagttaca
6901 gactgctgtg gacagtgtgg tcagtctgtt gactctttac catcttcggt gctaaaaagg
6961 cgccaaaggc aaaatttggc agcccttcca tgttttgaca accgttcacg gtcggtaagt
7021 atagctgcgg gtgagtacaa gttcaaacaa aatgggttga ctcaaacaca cctggctgaa
7081 acctgagtcg gttgcctcgg gaccgaaggc ggtactaaag tgtagataag agcaatagtt
7141 ggcaacaaca atcttcctaa ggctttataa tacaccggga gtggtatata taaaatcagc
7201 agcttctgca cttttcagca gctttt
//
