LOCUS NC_038715 5088 bp RNA linear VRL 24-AUG-2018
DEFINITION Alajuela virus strain MARU 11079 segment M, complete sequence.
ACCESSION NC_038715
VERSION NC_038715.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Alajuela virus
ORGANISM Alajuela virus
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae;
Orthobunyavirus; Alajuela orthobunyavirus.
REFERENCE 1 (bases 1 to 5088)
AUTHORS Nunes,M.R., Chiang,J.O., de Lima,C.P., Martins,L.C., Aragao
Dias,A., Cardoso,J.F., Silva,S.P., Da Silva,D.E., Oliveira,L.F.,
Vasconcelos,J.M., Ferreira,J.P., Travassos da Rosa,A.P., Guzman,H.,
Tesh,R.B. and Vasconcelos,P.F.
TITLE New Genome Sequences of Gamboa Viruses (Family Bunyaviridae, Genus
Orthobunyavirus) Isolated in Panama and Argentina
JOURNAL Genome Announc 2 (6) (2014)
PUBMED 25414487
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5088)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-AUG-2018) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5088)
AUTHORS Nunes,M.R.T., Lima,C.P.S., Martins,L.C., Diniz Junior,J.A.P.,
Cardoso,J.F., Silva,S.P., Da Silva,D.E.A., Oliveira,L.F.,
Vasconcelos,J.M., Chiang,J.O., Travassos da Rosa,A.P.A., Guzman,H.,
Tesh,R. and Vasconcelos,P.F.C.
TITLE Direct Submission
JOURNAL Submitted (04-AUG-2014) Center for Technological Innovation,
Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para
67.030-000, Brazil
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KM272187.
##Assembly-Data-START##
Assembly Method :: Mira 4.0
Coverage :: 90
Sequencing Technology :: ION
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..5088
/organism="Alajuela virus"
/mol_type="genomic RNA"
/strain="MARU 11079"
/host="Aedeomyia squamipennis"
/db_xref="taxon:1552846"
/segment="M"
/country="Panama: Panama State"
/lat_lon="9.13 N 79.70 W"
/collection_date="09-Jan-1963"
5'UTR 1..42
gene 43..4821
/locus_tag="D1S36_sMgp1"
/db_xref="GeneID:37618993"
CDS 43..4821
/locus_tag="D1S36_sMgp1"
/codon_start=1
/product="polyprotein"
/protein_id="YP_009507856.1"
/db_xref="GeneID:37618993"
/translation="MIHLIAIILATASAEPTRCFSGGSKIFEKTSNFAVSEVCLKDDV
GLIKIQTDYHKNDTGIFATMSSWRKWTVTEWHSCKPRKVNMGSISVIEIDSNFTIKTA
SYSCNKDCMITVDKEHATVLLQSTGLNHYELTGTTIKTGWFKSTATVPLDQTCEHIKI
ICGLKSLQFHACFKQHMACVRFLHRSILLGYIASSICHNIELILMCCLIIFIFTILVI
LTKTYICYILLPIFVPIAYSYGWIYNKSCKKCQLCGLAYHPFTKCGQNCVCGALFDTT
ERMRIHRISGLCPGYKSMRTARVLCKNRGSALLLSIALGFLTVSFLTPIADAKTLESH
EDDTKLFLHMVQNTTIDQPILYKQCYYRVHFCQTVIDHNKYRMLSRFVCSNQDLFMTL
LLLPASYAAIQLIDFIVKTAIRLIKQRRWIKVSQDADENSYVEMNPISMNSTRTVFKI
RKFSFNKPFFALSAAILVNSFLSVNGAMLPTPKTVYDINELPDDFRELHAQAGLLHII
TYLNAMWTTMAAILVLSIMILLSKKQRKLLGLCAMYCEECDMYHSKRGIKYNGDFTNK
CGKCTCGTVEDATGLTVHKLRLECLIKYKLKWFKTLLVFILCVYITKDMALLTAAEEI
TDCLKKTELTGNCTGPFFKPSGCNGIASGKLGPEEIITLLKSKKAISSLDEPLIKDLP
LEVGIAIKKINSVQDIHKKMVLEFAFLQRNCDYYSRFTGDSGYSQVSWRSYTQISMFD
LCKNSQAAGTCKCLKIGNSCTKNDSLEDTSVEFYKEGNKIQHDHELFLSIFKLAFPGT
AYAYVLNQTEQQNFEAVKNYLAAIQTKYPENYMLKSLMKVGSIIYKNLSSANLSSEHK
EDLPKYIPVYHGNTRGRTGVNRHDKKLNQSNVREDGICINPKDIVCISPRSKMHAPIY
TWCEKGTTVYIPNLDGLKLYRSALNSGVFCFGDKHCLIKPKMFDSKTAEDIFNNECLA
SPHTEEVDQYSLGQLRCNIISYGRCFVDSKGEYWPVALCAGGFHFYASQGSVPEDAVD
PSERCLGEECHLRRYPINPVSLSNCTYYDPKVRMNRVKESVHTDFESYKNSIIRRLAD
DLTVHKFLKTSNLPYFNPNFKYITMSGVDTTEGIENAYIEFEIPASTGVAAGYNILAD
NQIHIFDVIIYIKSAKTVAEYQWIYSTGPTITINTEHAEHCTGRCPSVIEAKKGWATF
SKERTSNWGCEEFGCLAIDDGCVFGSCQDVIKPEANVYKKIGQEKTTAEICVSMNHDA
YCTEIEATVPIISSSIEAQFKTVDAPVMPNLVLVRDHKLYRGQINDLGSFGKYCGNVQ
VRNLTVLGQADVKFDYLCHAAQRKDIIVRKCLENNYASCKLLDLEEHFILDESESNVK
LSDLGRLTGALKVKLYLGDFKYKSFSREIDVDATIECVGCYNCLKGIDCKLNLHTTVE
ASCKIDTPCPASLSRIVIKPTIDEYAINMKCQKPLEGDNVLIKVCNAAIKTQIAISKK
TEQIELSTGEQSTYIHEEDLRCSTWICKIKDEGFSFLLKPITDWLGTFTRPVLISFAV
IFILLVLLYILIPVFAKIRDKLREIEKEYQKEARASRKHK"
misc_feature 94..936
/locus_tag="D1S36_sMgp1"
/note="Bunyavirus glycoprotein G2; Region: Bunya_G2;
pfam03563"
/db_xref="CDD:397566"
misc_feature 1417..1902
/locus_tag="D1S36_sMgp1"
/note="bunyavirus nonstructural protein NSm; Region:
bunya_NSm; TIGR04210"
/db_xref="CDD:211933"
misc_feature 2020..4623
/locus_tag="D1S36_sMgp1"
/note="Bunyavirus glycoprotein G1; Region: Bunya_G1;
pfam03557"
/db_xref="CDD:281546"
3'UTR 4822..5088
ORIGIN
1 agtagtgtac taccgtgtta aacaaaatat tcaattctca aaatgattca cttgattgcc
61 ataattctgg ccacagcatc tgcagaacct acgagatgtt tctctggtgg ttcaaagatc
121 tttgagaaaa cttcaaactt tgcagtttct gaggtctgcc ttaaagatga tgttggcttg
181 attaagatac aaaccgatta ccataagaat gacacaggca tctttgcaac aatgagttct
241 tggaggaaat ggactgtgac agagtggcac agctgcaagc ctcggaaagt caacatgggc
301 tctatatcag ttattgaaat agatagcaat tttacaatta aaaccgccag ctactcctgc
361 aataaagact gcatgataac tgttgacaaa gagcatgcta cagtgttatt gcaaagcact
421 gggttgaacc attatgaatt aacagggact acaatcaaaa cgggatggtt taaatcaact
481 gccactgtac cattagacca gacttgcgaa cacatcaaaa ttatatgcgg cctgaaaagt
541 ttgcagttcc atgcttgctt caaacagcat atggcttgtg ttaggttctt acataggtct
601 attttactag gctatatagc ttcttcaatc tgtcataata ttgaattaat cttaatgtgt
661 tgcttaatta tctttatatt tactattttg gttatattaa caaagacgta tatatgttat
721 atactgctac ctatatttgt ccctatcgct tatagttatg gttggattta caacaagagc
781 tgcaaaaaat gtcaactgtg tggattagca tatcatcctt tcacaaagtg tggccaaaat
841 tgcgtatgtg gtgccttatt tgacactact gaaagaatga ggatacatag gatttccggt
901 ttatgtccag gatacaaatc aatgagaacc gccagagtcc tatgtaaaaa taggggttca
961 gcattacttc tatccatagc actaggattc ttaactgtat cgtttttaac acctatagct
1021 gacgcaaaga ccctggaaag tcatgaagat gatactaaac ttttcttaca tatggttcaa
1081 aatactacaa tagaccaacc tattttatat aagcagtgtt attatagagt tcatttttgt
1141 caaacagtaa tagaccacaa caagtataga atgttatcca gatttgtttg ttctaatcaa
1201 gatcttttta tgaccctcct actcttacca gcttcctatg cagcaataca acttattgat
1261 tttatagtta aaactgcaat tagattaata aaacagagga ggtggataaa agttagccaa
1321 gatgctgatg agaattccta tgtcgaaatg aatccaattt caatgaacag tactagaaca
1381 gtctttaaaa ttaggaagtt ttcatttaat aaaccatttt ttgcactatc agctgctata
1441 ttagtaaatt cttttctttc tgtgaatggg gcaatgctgc caacacctaa aactgtatat
1501 gatataaatg agcttcctga tgacttcagg gaactgcatg ctcaagcagg gttactacat
1561 atcataacat acttgaatgc aatgtggacc actatggctg cgatcctggt tctgtctatc
1621 atgatattgc tttcaaagaa gcagcgtaag ttacttgggc tctgtgcaat gtattgtgaa
1681 gaatgtgaca tgtatcatag caaacgagga atcaaatata atggcgattt cactaacaaa
1741 tgtgggaaat gtacatgcgg aactgttgaa gatgcaactg gactaacagt acacaaatta
1801 agattagagt gtttgattaa atataaatta aagtggttta aaaccttgtt ggtctttatt
1861 ctttgtgttt atataacaaa agatatggca ttgttaacag ctgctgagga aattactgat
1921 tgtctaaaaa aaacggaatt aacaggaaat tgcacaggtc cttttttcaa gcctagcgga
1981 tgcaatggta ttgcttctgg aaaacttgga cctgaagaaa tcataacctt attaaaatca
2041 aaaaaggcaa tttcaagttt agacgaacct ctaattaaag atcttcctct agaagttgga
2101 attgctatca aaaaaatcaa ttctgtacag gacatacata agaaaatggt tttagaattt
2161 gcatttctac aacggaactg tgactactac agcaggttta caggtgattc cggttattct
2221 caagtaagct ggaggtcata tacacagatt tccatgtttg acctttgtaa aaatagtcaa
2281 gcagcaggaa cttgtaagtg tttgaaaatt ggcaactcct gcacaaaaaa tgattcctta
2341 gaagatacat ctgtagaatt ttataaagag gggaataaga ttcaacatga ccacgaatta
2401 tttttgagca tttttaaatt agcttttcca gggacagctt atgcatatgt gctaaaccag
2461 actgaacaac agaattttga agctgtaaaa aattatttag ctgcaataca aacaaaatat
2521 ccagaaaatt atatgcttaa aagcttgatg aaagtaggat ctattattta caaaaatcta
2581 tcaagtgcta atttatcgtc agaacacaaa gaagaccttc caaaatacat acctgtctat
2641 catgggaata ctaggggtag aacaggagtt aatagacatg ataagaaact aaatcagagt
2701 aatgttagag aagatggcat ttgcattaac cctaaggata tagtttgtat atctccacgg
2761 tccaagatgc atgctccaat atacacctgg tgtgaaaaag gaacaacagt atatatcccg
2821 aatctagatg gacttaaact atatagatct gcattaaatt caggtgtctt ctgctttgga
2881 gataaacact gcttgattaa acctaaaatg tttgattcga aaactgcaga agatattttc
2941 aacaatgaat gtcttgcaag ccctcataca gaagaagtgg accagtactc attaggtcag
3001 ctgcgttgca acataatttc ctatggccga tgttttgtag actcaaaagg cgaatattgg
3061 cctgtagcat tatgtgcagg aggattccac ttttatgctt ctcaaggttc agttcctgaa
3121 gatgctgttg atcctagtga aagatgcctt ggagaggaat gccacctgcg gcgctatcca
3181 ataaaccctg tatccttaag caattgcaca tactatgatc caaaagtaag aatgaataga
3241 gttaaagaaa gtgtacatac tgactttgag tcttacaaga attccattat aagacgacta
3301 gctgatgacc taacagtaca taaattcctg aaaacttcta acctgccata ttttaaccca
3361 aactttaaat atataactat gtcaggggtt gatacaactg aaggcataga aaatgcatac
3421 atagaatttg aaatcccagc ttctactgga gttgctgcag gctataatat attagctgat
3481 aatcaaatac acatttttga tgtcataatt tatatcaagt ctgcaaagac agtggctgaa
3541 taccaatgga tttacagcac tggtcctacg atcacaataa acactgagca tgcagagcat
3601 tgtacaggga gatgcccttc tgtaatagaa gcaaaaaagg gctgggcaac cttcagtaaa
3661 gaacgaacca gcaattgggg atgcgaagaa tttggatgct tggcaataga tgatggctgt
3721 gtttttgggt catgtcaaga tgtgataaag cctgaagcaa atgtatacaa gaagataggg
3781 caagaaaaaa caactgcaga gatttgtgtt tcaatgaatc atgatgcata ctgcacagaa
3841 atagaagcaa cggtgcctat aatttctagt tcaatagagg cacaatttaa gactgttgat
3901 gctccagtaa tgcccaactt agtacttgtt agggatcaca aattatatag agggcaaatt
3961 aatgatctag gcagttttgg caaatattgt ggaaatgttc aggtcagaaa tttaacagtg
4021 ttgggacagg cagatgtaaa atttgattac ctttgtcatg ctgctcaaag gaaggatatt
4081 atagtaagga agtgccttga gaataattat gccagttgta aattgctaga tctagaagag
4141 cattttatac tggatgagtc agaaagcaat gtcaagttga gtgatcttgg aaggcttact
4201 ggagcattaa aagtaaagct atacctgggt gatttcaagt acaaatcatt tagcagggaa
4261 atagatgtgg atgccacaat agaatgtgtt ggctgttaca attgtcttaa aggaattgat
4321 tgcaaactga atttacacac tacagtagaa gctagctgta agatagatac accatgtcca
4381 gctagcttga gcaggattgt aatcaaacct acaattgatg aatatgcaat caacatgaag
4441 tgccaaaagc ctctagaagg agacaatgta ttaattaaag tttgtaatgc agcgattaaa
4501 acacaaattg ctatttcaaa aaagacagag caaattgaat tgtcaacagg agaacaatcc
4561 acttatatcc atgaggagga tctaaggtgt tcaacttgga tatgcaaaat aaaagatgaa
4621 gggttttcat ttttactaaa gccaataaca gattggttag gaacattcac taggcctgtt
4681 ttaataagtt ttgcagtaat atttatttta ctggtacttt tatacatttt aataccagtt
4741 tttgccaaaa ttagagataa attaagggaa atagaaaagg agtatcaaaa agaagctagg
4801 gccagtagaa aacataaata agctatagaa cacacgaggc aaatccagaa cataggcatt
4861 tcaaatgggg acaagccaaa actagaacaa acctagaaag attggaaaat ttttttttta
4921 aaaatcatat ttgggttagg gtcaaatttc ggggatcgca tttgggtcgg ggtcaaaatt
4981 tcaaacagca catgttatat tatctagtat attttcagaa gtttatataa tatttttgtt
5041 ttaaacacgg tagcacacta ctcaaaatga ttcacttgat tgccaata
//
