LOCUS       NC_039060               2459 bp    DNA     circular VRL 24-AUG-2018
DEFINITION  Chicken associated huchismacovirus 2, complete genome.
ACCESSION   NC_039060
VERSION     NC_039060.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Chicken associated huchismacovirus 2
  ORGANISM  Chicken associated huchismacovirus 2
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus;
            Huchismacovirus chicas2.
REFERENCE   1  (bases 1 to 2459)
  AUTHORS   Lima,D.A., Cibulski,S.P., Finkler,F., Varela,A.P.M., Teixeira,T.F.,
            Cerva,C., Domingues,G., Loiko,M., Scheffer,C.M., Santos,H.F.,
            Mayer,F.Q. and Roehe,P.M.
  TITLE     Fecal virome of healthy chickens reveals a large diversity of the
            eukaryote viral community, including novel circular single-stranded
            DNA viruses
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2459)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2018) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2459)
  AUTHORS   Lima,D.A., Cibulski,S.P., Finkler,F., Varela,A.P.M., Teixeira,T.F.,
            Cerva,C., Domingues,G., Loiko,M., Scheffer,C.M., Santos,H.F.,
            Mayer,F.Q. and Roehe,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2016) Microbiologia, Parasitologia e Imunologia,
            Universidade Federal do Rio Grande do Sul, Rua Sarmento Leite, 500,
            Porto Alegre, Rio Grande do Sul 90035-190, Brazil
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to KY086300.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2459
                     /organism="Chicken associated huchismacovirus 2"
                     /mol_type="genomic DNA"
                     /strain="RS/BR/2015/3"
                     /isolation_source="feces"
                     /host="Gallus gallus"
                     /db_xref="taxon:2169933"
                     /country="Brazil"
                     /collection_date="31-Jul-2015"
                     /collected_by="Diane Lima"
     gene            1..747
                     /locus_tag="D1U59_gp1"
                     /db_xref="GeneID:37620355"
     CDS             1..747
                     /locus_tag="D1U59_gp1"
                     /codon_start=1
                     /product="replication associated protein"
                     /protein_id="YP_009508839.1"
                     /db_xref="GeneID:37620355"
                     /translation="MPSPKWYDITASMDKIPEETLRAWLDKHCERYAYGRETGENGYK
                     HYQIRLVLKTGADISEMRKIWSAVGHVSCSHTRNFDYVLKEGDFVCSWIKIPEEMKNP
                     VFRPWQKALLELEQNDREIDVIIDLKGNTGKSWITKYLCLKNRATNIPCGLEAKDIMR
                     MCLKRQNTGWYILDMPRASTKQAKSTWSAIESIKNGYLWDDRYTWEEKWIDPPKVTVF
                     TNEYPKYDLVSEDRLRFWAPVETGLVSLAK"
     gene            complement(1110..2090)
                     /locus_tag="D1U59_gp2"
                     /db_xref="GeneID:37620354"
     CDS             complement(1110..2090)
                     /locus_tag="D1U59_gp2"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="YP_009508840.1"
                     /db_xref="GeneID:37620354"
                     /translation="MTNRISQTFQWYADFSTSPERMQVIKITCGGERTRRRLLPFFGA
                     FKYYKLGSVDVKFVPASTLPVDPTGLSLEAGENTVDPRDQFNPGLVRITNGEDFWEDF
                     PSGDTNKADALYYQMMLDQRWYKFNLQSGFRRSATPRYWTVGQFHQDVFPGFITNVPS
                     FTKETGPPVSVHNFDTDHLKYQVENNDRLYNVSQGSSPYSLFQTGNKGTLGWLTTDNF
                     LNVDSNYDRMCIADVPEVELMRVILPKAYKTKFYYRIYVSETVYFKEPVTMNAASYAI
                     GTSPETYGYLTNSLDRFVFSRTEGVGTPSPYALATIQSQWHNDAHPGGVN"
ORIGIN      
        1 atgcctagcc ctaaatggta cgatataacg gcttctatgg acaaaattcc agaggagaca
       61 ctaagagctt ggttagataa acattgtgag aggtatgctt atggaagaga aacaggagaa
      121 aacggataca aacactacca gatacgactt gtacttaaaa ctggtgccga tattagcgaa
      181 atgcggaaga tatggtccgc tgttggccat gtgtcttgta gtcatactag aaatttcgac
      241 tatgttctaa aagaaggtga ttttgtatgt tcatggataa agataccaga agaaatgaaa
      301 aatccagtgt tcaggccttg gcagaaagca ttgctagagc tagaacaaaa cgacagagaa
      361 atagatgtca tcatagatct aaaagggaac actgggaaat catggataac gaagtacttg
      421 tgtttgaaaa atcgggcgac gaatataccc tgtggattag aggcgaaaga tatcatgcgt
      481 atgtgtctga agcgtcaaaa tactggttgg tatatcttag atatgccgag agcgagcacc
      541 aagcaggcaa aaagtacatg gagcgctatc gaaagcataa agaacgggta cctatgggac
      601 gaccgctaca cgtgggagga gaagtggata gatccaccga aggtaacggt gttcacaaat
      661 gagtatccaa agtacgacct cgtgtcggag gatcgactaa ggttttgggc accggtggaa
      721 acggggcttg ttagcctcgc gaaataaacg ccgggctttt agcgctgccg cgtaatactg
      781 cgcccggcta atatctttct tacttatatt tctttaactt ttgggaaccg tgtctgaaat
      841 ccgacaaagt atataaatgg ttatcagcgc gtagaatggt tggttaaaaa taaaaaaagg
      901 tcgagggtag cacctaggac gtgtgcaagg cgcaacggcg cttcgcgcaa tgataggtac
      961 cagacctcag acctcagacc tcagacctca gacggatcaa ggtaagtggt tttcagggtc
     1021 agagtagtct gcctcatcga catcatccca ctcaaactcc atataacgac cttcgcgtag
     1081 cttcctacca ttgatgtaga tattagccat tagttaacac ctccaggatg tgcgtcatta
     1141 tgccattgag actgtatagt cgctagagca taaggagaag gagtaccaac accttcagta
     1201 cgtgaaaaca cgaacctatc gagactatta gtaagatatc catatgtctc aggactggtt
     1261 ccaatagcat aggaggcagc attcatagta actggctctt taaagtacac tgtttcagat
     1321 acgtatattc tgtaataaaa cttagttttg taagccttag gaagaataac acgcataagc
     1381 tcaacctctg gaacatcagc aatacacata cgatcatagt tactgtcgac atttaagaag
     1441 ttgtcagttg ttaaccagcc taaagtacct ttgtttccag tttggaataa actgtatgga
     1501 ctagaacctt gggatacatt gtaaagccga tcattgttct ctacctgata cttaagatga
     1561 tctgtatcga aattatgaac agaaactgga gggcctgtct ccttagtaaa ggatggaaca
     1621 ttggtaataa aaccagggaa gacatcctga tggaactgac ctacagtcca gtaccttgga
     1681 gtagcagacc ttctgaaacc agactgtaaa ttgaatttat accaacgttg gtcaagcatc
     1741 atctgataat agagagcgtc agctttgttg gtatcacctg aagggaaatc ctcccagaaa
     1801 tcctcaccat ttgttatacg gactagacca gggttaaatt gatctctagg atcgactgta
     1861 ttttctccag cctctaagct aagaccagtt ggatcaaccg gtaaagtact agcaggaacg
     1921 aacttaacat cgacagaacc aagcttatag tacttaaagg caccaaagaa tggaaggagt
     1981 ctcctacgtg ttctttctcc accacacgta atcttaatga cctgcattcg ttcaggtgaa
     2041 gtagaaaagt ctgcgtacca ttggaatgtt tgagatattc gattagtcat aattcatcac
     2101 actcctggaa gatttatata aacttgtacc agcacgaaca gcagactcaa cgagataatt
     2161 ggcaggacca ctaaatgcct gggcttcata cgaattagta gcataagcat aagatcgacc
     2221 tgtatttttc ctccaatctc tgtccatctg acgtaagtcc ttatagcggt cgtactggtg
     2281 aatagccttg cctataccca taggaagggc atacatccag tattcagcca tattaatacc
     2341 ttctcctgcg gtaatatctt ctgcgaccat agccaccgta gtaacgtcta cgggaatagc
     2401 gtctataacg tctgtaatac gccataaaga gtaaataggt gtccgggtat taaaggttt
//