LOCUS       NC_039081               1379 bp    DNA     circular VRL 24-AUG-2018
DEFINITION  Nanovirus-like particle rep gene for replication associated
            protein, clone SB45-2.
ACCESSION   NC_039081
VERSION     NC_039081.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq; rep gene; replication associated protein.
SOURCE      Nanovirus-like particle
  ORGANISM  Nanovirus-like particle
            Viruses; Alphasatellitidae; Geminialphasatellitinae.
REFERENCE   1
  AUTHORS   Briddon,R.W., Bull,S.E., Amin,I., Mansoor,S., Bedford,I.D.,
            Rishi,N., Siwatch,S.S., Zafar,Y., Abdel-Salam,A.M. and Markham,P.G.
  TITLE     Diversity of DNA 1: a satellite-like molecule associated with
            monopartite begomovirus-DNA beta complexes
  JOURNAL   Virology 324 (2), 462-474 (2004)
   PUBMED   15207631
REFERENCE   2  (bases 1 to 1379)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2018) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1379)
  AUTHORS   Briddon,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2002) Briddon R.W., Dept. of Disease and Stress
            Biology, John Innes Centre, Coney Lane, Norwich, NR4 7UH, UNITED
            KINGDOM
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AJ512960.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1379
                     /organism="Nanovirus-like particle"
                     /mol_type="genomic DNA"
                     /host="Gossypium hirsutum"
                     /db_xref="taxon:96892"
                     /clone="SB45-2"
                     /tissue_type="leaf"
                     /country="Egypt"
     gene            92..1039
                     /gene="rep"
                     /locus_tag="D1U76_gp1"
                     /db_xref="GeneID:37620415"
     CDS             92..1039
                     /gene="rep"
                     /locus_tag="D1U76_gp1"
                     /function="involved in initiation of rolling circle
                     replication"
                     /codon_start=1
                     /product="replication associated protein"
                     /protein_id="YP_009508879.1"
                     /db_xref="GOA:Q6HA12"
                     /db_xref="InterPro:IPR000605"
                     /db_xref="InterPro:IPR003365"
                     /db_xref="UniProtKB/TrEMBL:Q6HA12"
                     /db_xref="GeneID:37620415"
                     /translation="MPALQSVFWCFTIFFTSSSIPELTPLFENSCVSYACWQEEESPT
                     TKRRHLQGYLQCKGKRSFNQVKLLFGDLNPHLEKQRARKTDEARDYCMKEETRVSGPF
                     EFGEYTAAGSHKRRQRESVQRSPVRMAEENPSVYRRVKAKLAEEEFQKSAPEIQISNL
                     KSWQLRLRQLLQRDPDDRTIYWVYGPTGGEGKSTFARDLFRTGTWFYTRGGSADNVAY
                     QYIGCLGNNIVFDIPRDKKDYLQYSLVEMFKDRLVVSNKYEPIMAPMTKCIHVVVMSN
                     FPPDMEKVSSDRVHVIPCIPCGACLKHHVAEIKCDEYLD"
     misc_feature    107..373
                     /gene="rep"
                     /locus_tag="D1U76_gp1"
                     /note="Putative viral replication protein; Region:
                     Viral_Rep; pfam02407"
                     /db_xref="CDD:280553"
     misc_feature    635..919
                     /gene="rep"
                     /locus_tag="D1U76_gp1"
                     /note="RNA helicase; Region: RNA_helicase; pfam00910"
                     /db_xref="CDD:425942"
ORIGIN      
        1 accccgcctc tcctccccct cctcggatcc ctcgtgcgat tcacgtgcct tccttgagaa
       61 aattgagata tttgtttccg cagggtttaa aatgcctgcc ctacaaagtg tcttctggtg
      121 ctttaccatc ttcttcactt catcttccat ccctgaatta actcctctct ttgagaattc
      181 ttgtgtctcg tatgcctgtt ggcaagaaga ggaatcacct acgacgaaac gtcgtcatct
      241 ccagggatat cttcagtgta agggcaaaag gagttttaat caggttaaat tattatttgg
      301 tgacctgaat cctcatcttg agaaacaacg agctcgtaag acagacgaag ctcgtgatta
      361 ttgtatgaaa gaagaaacta gggtttctgg cccctttgaa tttggggaat atacagctgc
      421 tgggtcacat aagagaagac aacgagagtc cgtacaaaga tctccggtga gaatggcgga
      481 ggagaatccc tccgtttaca ggcgtgtaaa ggcgaagctt gctgaggaag aattccagaa
      541 gtccgctcct gaaattcaaa tttcaaattt gaaatcttgg cagctgcgcc tcagacagct
      601 tcttcagagg gacccagatg accgcactat ctactgggtt tatggaccta ctggtggaga
      661 aggaaaatcc acctttgcta gagacctctt caggactggg acctggttct atacacgtgg
      721 aggatctgca gataatgtag cttaccagta tataggatgt ttaggaaata atattgtatt
      781 tgatattcct cgtgataaga aggattatct acagtatagt ttagtagaga tgtttaagga
      841 taggttagta gttagtaata agtatgagcc tattatggcc cctatgacta aatgtattca
      901 tgttgtagtt atgtctaatt ttcctccaga catggagaag gttagtagtg atagggtcca
      961 tgtaattcct tgtattccat gtggtgcctg tcttaagcat catgttgctg aaataaaatg
     1021 tgatgagtat ttggattaat atttgtgtga ttctattaaa taaaaaagaa tggccgcagg
     1081 ccgaatgggc gaagcccatc atagtcacag ttttgcttct tgaaaacaag aaggaatgta
     1141 atgaaaaaaa aaatatttga gttttgacat ctttttttaa tgttgggctg tttggatttg
     1201 gatttgggtt gcaactgtat aatgttaaac tagggtttct ggcccatttg tttgatttac
     1261 tttcgctagg gacctatttg caatttctga aaagttttag aaacgcggag gggcttattt
     1321 gcaattattg aaagtccgta cgggatccga ggatatataa gcgaggcggg tgtagtatt
//