LOCUS NC_040315 3161 bp DNA circular VRL 21-DEC-2020
DEFINITION Chicken stool associated circular virus 2 strain RS/BR/2015/1R,
complete genome.
ACCESSION NC_040315
VERSION NC_040315.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken stool associated circular virus 2
ORGANISM Chicken stool associated circular virus 2
Viruses.
REFERENCE 1 (bases 1 to 3161)
AUTHORS Lima,D.A. and Roehe,P.M.
TITLE A case-control study in search for viruses in malabsorption
syndrome affected and healthy chickens
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3161)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-FEB-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3161)
AUTHORS Lima,D.A. and Roehe,P.M.
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2018) Departamento de Microbiologia, Imunologia e
Parasitologia, Universidade Federal do Rio Grande do Sul, Sarmento
Leite, 500, Porto Alegre, Rio Grande do Sul 90050-170, Brazil
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MG846355.
##Assembly-Data-START##
Assembly Method :: MetaSPAdes v. 3.10.1; Geneious v. 9.1.8
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3161
/organism="Chicken stool associated circular virus 2"
/mol_type="genomic DNA"
/strain="RS/BR/2015/1R"
/isolation_source="feces"
/host="Gallus gallus"
/db_xref="taxon:2109374"
/country="Brazil"
/collection_date="2015"
/collected_by="Diane Lima"
gene 361..1275
/locus_tag="EXH62_gp1"
/db_xref="GeneID:41701964"
CDS 361..1275
/locus_tag="EXH62_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_009551343.1"
/db_xref="GeneID:41701964"
/translation="MPRYKSRRTSSRYSRRYRRYRRYRRYARIPRRVSYANGRDSSRT
NIKVVTTTYRAGDIAAGANDSIVFTLPAFSRTGGSGPSIVDSICVLNSPLYRAYTSLY
EEVLLRGVSYEITVNNPIGASATTLPPFMIFTSVDRRYAYGEVPPSQSQLTNYSSSKP
ISYVTYNVTKFRKYVGARDLVEKTQYHDCTVSYYNSGGNQYWYDPAVNSAGVNPNFFN
PALFFFVRFPFAPTSTMQLQLSIRCTFYLTFRNPAPFDSVPVPAAAAAAASGPFESFS
TLSADEQLLDIPDPHPLSGSTDPPLIET"
gene complement(1824..3158)
/locus_tag="EXH62_gp2"
/db_xref="GeneID:41701963"
CDS complement(1824..3158)
/locus_tag="EXH62_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_009551344.1"
/db_xref="GeneID:41701963"
/translation="MRSNFVISNSVANFRARRDIETAAKRWCFTINNPTDRDRFWESP
DALEQLSYIIVQEERGENGTVHYQGFLILKKRNRVTWLKRNMNERAHWEKTRGTDKQA
ADYCRKDDTHVPGGLRFEHGKPPREKKDKEQEANEILDSLRTGYKRPQEIPAELLRSR
NFISAYKLITTDVLGPFRPNLKIITLVGPPGCGKSYLINYLFPDCARLIMGNAGFWWQ
NPCSKVACIEEFAGQIPLQKMLNLLDPYPQSLEVKGGTRPCLFEVIFITSNSCPEDWY
RNKVPGIPEEAKRHDALLALYDRLGYHPAWHHGALERTCGHYLEPPQLGAITPEWIQE
TRKWLLREVRRILEMPEEQPAAAAAAAQPEEQPTQRLEEAEEFPEHQPELTLLETTTS
SQTSITLKLSADKTHLGKTSTSSKHKAHNTQDTHSTKRKFVSQLRQLKLWAV"
misc_feature complement(2832..3089)
/locus_tag="EXH62_gp2"
/note="Putative viral replication protein; Region:
Viral_Rep; pfam02407"
/db_xref="CDD:280553"
misc_feature complement(2352..2603)
/locus_tag="EXH62_gp2"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl38936"
/db_xref="CDD:453896"
ORIGIN
1 tgggtttaag tacgcaaata gctggaactt tccacagaac tttccatgtg tcgacttttt
61 gtcgactttt cgtcgacttt tccgtcagtt ttcttagatt tgcgtatctt ctgtgccggg
121 aggctgatgt tgcgctgctg aattcttctg aattcttagg aattctatag aaatccacgg
181 aattcttggg aattattttt cttccgaatt cttctgaatt ctctggaatt cccccacttt
241 tcttgggaat tctctggaat tcttctgaaa ttttaggaaa aatatttcct tggaattctt
301 tggaattctt tgtaattctt aggaattcaa gaaaattcgt gagtgactga ctgcttctac
361 atgccgcgtt acaagtccag gagaacatca tcaaggtatt cacgtagata ccgtcggtac
421 cggaggtacc ggcggtatgc acgtattcct cgcagggttt cttatgccaa tggtcgtgac
481 agttctagga ctaatattaa ggtggttacg actacctata gggctggaga tattgcagct
541 ggtgccaatg attctattgt ttttactctt ccagcttttt ctaggactgg tggttctggt
601 ccgagtattg ttgattctat ttgtgtgttg aatagtcctc tttatcgtgc atatacttca
661 ttgtacgaag aggttcttct tcgcggcgtt tcgtatgaaa tcactgtgaa taatccaatt
721 ggcgcctctg ctactacatt gcctcccttt atgatattta cttctgttga tcgtagatat
781 gcttatgggg aggtacctcc ttctcagtct cagttgacta attattcgtc gagtaagccc
841 atttcttatg tcacttacaa tgtgactaag ttccgtaagt atgttggtgc tcgggatttg
901 gttgagaaga cacagtatca tgattgtact gtttcttatt ataactctgg tgggaatcaa
961 tattggtatg atcctgctgt gaatagtgct ggtgtgaacc ctaatttctt caatcctgca
1021 ctgttctttt tcgtcaggtt cccatttgca ccgacatcta cgatgcagct tcagctctct
1081 attcgttgta ctttttacct cacgttccgt aacccggctc cttttgattc ggttcctgtt
1141 cctgctgctg ctgctgctgc tgcttctgga ccatttgagt ctttttcgac tctttctgct
1201 gatgaacaat tactggacat tcctgaccca cacccacttt ctggttccac tgatcctcct
1261 cttattgaaa cataacttta ataattaacg cgaagctccc ccctcgttaa tcttcctttc
1321 attggataga tagggtaggg ttttagggaa tcaccttgtc agactgtggc gcctttagag
1381 cgcagcgccg aaggcgcgga gcgtgcgcca cagtgtgtca agctgatgga caaaacccta
1441 ccctatctgt agatgaaagg ggggttagag gggggatgcg gagcgtttag ggctattccc
1501 ccatcacttg gggctatgtt tatgttgcgt tctggttgcg gggccatctt agatggcccc
1561 tttctggttg tgcttgttgc tggttgctct gcttctggtt gctctgctgc tggttgctgc
1621 tttgctggtt gctggttgct ggtagagctg ctgctggttg ctggttgcta gtaatatagc
1681 gctctaagca ctataaaatt ttttctatta gattatatat aaattactta aatggacata
1741 agaaatagag catttttcta ttaggttaaa acgctctatc cttgcggtat aaggggcgcg
1801 ggttgagtat tacccgcgcc cctctatacc gcccatagtt tcagttgtcg taattgggag
1861 acgaattttc ttttagttga gtgagtgtct tgtgtgttgt gtgctttgtg tttagaagag
1921 gtcgatgtct tgccaagatg cgttttgtct gcggagagct tgagggtgat ggatgtctgg
1981 ctcgaagtcg tcgtctcgag gagtgtgagt tctggctggt gctccgggaa ctcttctgcc
2041 tcctctaagc gttgcgttgg ttgctcttct ggttgcgctg ctgctgctgc tgctgctggt
2101 tgctcttcag gcatttccag gatcctcctt acctctctca ggagccactt gcgtgtctcc
2161 tggatccact ctggtgtgat tgcaccaagc tgtggtggtt ccaggtagtg tccgcaggtg
2221 cgctcaagtg caccgtgatg ccaagcagga tggtatccca ggcggtcgta gagcgccagg
2281 agtgcgtcgt gtctcttagc ctcctcaggg attccaggta ccttgttcct gtaccagtcc
2341 tcagggcagg agttggaggt gatgaatatc acctcgaaga gacagggcct agttccgccc
2401 ttgacttcca ggctctgtgg gtacggatct aggaggttga gcatcttctg gagcgggatc
2461 tgtcccgcga actcctcaat gcaggctacc ttggagcaag ggttctgcca ccagaatccc
2521 gcgttgccca tgatgagcct ggcgcagtca gggaagaggt agttgatcag gtaggatttg
2581 ccgcatccag gagggccgac cagggtgatg atcttcaggt ttggcctgaa gggaccaagg
2641 acgtctgtcg tgatgagttt gtacgccgag atgaagttgc gtgaacgcag tagttctgcc
2701 ggtatttctt gtggtctctt gtaccctgtt cttaaggagt ccaggatttc gtttgcttct
2761 tgctccttgt ccttcttctc tcttggtggc tttccgtgtt cgaagcgtag acctccgggg
2821 acgtgagtgt cgtccttcct gcagtagtct gctgcttgct tgtccgttcc gcgtgtcttt
2881 tcccagtgcg ccctctcgtt catgttcctc ttgagccaag taactctgtt tcttttcttt
2941 aggatgagga acccctggta gtgcacggtt ccgttctcgc ctctctcttc ctggacgatg
3001 atgtaggaga gttgttccag agcgtctgga ctctcccaga acctgtccct atccgtgggg
3061 ttgttgatgg tgaagcacca cctcttagct gctgtttcta tatctcttct tgctctaaaa
3121 tttgcgacgg aatttgaaat cacaaagttg gatctcataa t
//
