LOCUS NC_040316 3173 bp DNA circular VRL 21-DEC-2020
DEFINITION Chicken stool associated circular virus 1 strain RS/BR/2015/1R,
complete genome.
ACCESSION NC_040316
VERSION NC_040316.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken stool associated circular virus 1
ORGANISM Chicken stool associated circular virus 1
Viruses.
REFERENCE 1 (bases 1 to 3173)
AUTHORS Lima,D.A. and Roehe,P.M.
TITLE A case-control study in search for viruses in malabsorption
syndrome affected and healthy chickens
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3173)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-FEB-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3173)
AUTHORS Lima,D.A. and Roehe,P.M.
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2018) Departamento de Microbiologia, Imunologia e
Parasitologia, Universidade Federal do Rio Grande do Sul, Sarmento
Leite, 500, Porto Alegre, Rio Grande do Sul 90050-170, Brazil
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MG846356.
##Assembly-Data-START##
Assembly Method :: MetaSPAdes v. 3.10.1; Geneious v. 9.1.8
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3173
/organism="Chicken stool associated circular virus 1"
/mol_type="genomic DNA"
/strain="RS/BR/2015/1R"
/isolation_source="feces"
/host="Gallus gallus"
/db_xref="taxon:2109373"
/country="Brazil"
/collection_date="2015"
/collected_by="Diane Lima"
gene 360..1271
/locus_tag="EXH63_gp1"
/db_xref="GeneID:41701960"
CDS 360..1271
/locus_tag="EXH63_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_009551345.1"
/db_xref="GeneID:41701960"
/translation="MPRYKSRRTSSRYSRRYRRYRRYRRYARIPRRVSYANGRDYSSV
NLKVVTNSYNSGQIQPSVNDSIVFVVPSFQRTGPSVSIPGYIGNAGCLNSPLYRAYTS
LYDEVKLRGVSFEISVANPMGVGATAMPSFLIFASVDRRWTINEDPPKPSQLASSASI
TPSCYVNYNKTKFKKYVSARDLIEKTQYHDTTIRFNPDPMNYWEDLAVSGANNNPNFF
CPALFFFVRFPFAPSAAMTLQFSVRTVFYLTFRNPAPFESVPAPPAAAAAAAAVSEPA
LPREFLEFTDDDPHPLSGSTAPPLFET"
gene complement(1823..3169)
/locus_tag="EXH63_gp2"
/db_xref="GeneID:41701961"
CDS complement(1823..3169)
/locus_tag="EXH63_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_009551346.1"
/db_xref="GeneID:41701961"
/translation="MRSNFVISNSVANFRARRDIEMPQETQVKRWCFTINNPTERDRF
WESPDALEQLSYIIVQEERGENGTVHYQGFLILKKRNRVTWLKRNMNERAHWEKTRGT
DKQAADYCRKDDTHVPGGLRFEHGKPPREKKDKEQDAEEMLEQIKAGYKRPSDIPAEI
LCTRNFISAYKLITTDVLGPFRPNLKIITLVGPPGCGKSYLINYLFPDCARLIMGNAG
FWWQNPCSKVACIEEFAGQIPLQKMLNLLDPYPQSLEVKGGTRPCLFEVIFITSNSCP
EDWYRNKVPGIPEEAKRHDALLALYDRLGYHPAWHHGALERTCGHYLEPPQLGAITPE
WIQETRKWLLREVRRILEMPEEQPAAAAAAAQPEEQPTQRLEEAEEFPEHQPELTLLE
TTTSSQTSITLKLSADKTHLGKTSTSSKHKAHNTQDTHSTKRKFVSQLRQLKLWAV"
misc_feature complement(2831..3088)
/locus_tag="EXH63_gp2"
/note="Putative viral replication protein; Region:
Viral_Rep; pfam02407"
/db_xref="CDD:280553"
misc_feature complement(2351..2602)
/locus_tag="EXH63_gp2"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl38936"
/db_xref="CDD:453896"
ORIGIN
1 gggtttaagt acgcaaatag ctggaacttt ccacagaact ttccatgtgt cgactttttg
61 tcgacttttc gtcgactttt ccgtcagttt tcttagattt gcgtatcttc tgtgccggga
121 ggctgatgtt gcgctgctga attcttctga attcttagga attctataga aatccacgga
181 attcttggga attatttttc ttccgaattc ttctgaattc tctggaattc ccccactttt
241 cttgggaatt ctctggaatt cttctgaaat tttaggaaaa atatttcctt ggaattcttt
301 ggaattcttt gtaattctta ggaattcaag aaaattcgtg agtgactgac tgcttctaca
361 tgccgcgtta caagtccagg agaacatcat caaggtattc tcgtagatac cgtcggtacc
421 ggaggtaccg gcggtatgca cgtattcctc gcagggtttc ttatgctaat ggaagggatt
481 attctagtgt caatctgaag gtggttacca actcgtataa ttctgggcaa atacagccat
541 ctgtgaatga ctctattgta tttgtagttc ctagttttca acgtactggc cccagtgtta
601 gtattcctgg ttatattggt aatgctggtt gtttgaatag ccctctttat agagcttata
661 cttctctgta tgatgaagtt aagcttcgcg gtgtttcttt tgagatttct gttgctaatc
721 ccatgggggt tggtgcaacg gcgatgcctt cttttcttat ttttgctagt gttgaccgtc
781 gttggacaat taatgaggac cctcccaagc ctagtcagct tgctagttct gcttctatta
841 ctccgtcttg ttatgtgaat tataataaga cgaagtttaa gaagtatgtc tctgctagag
901 atcttattga aaagacgcag taccatgata ctactattcg ttttaatccc gatcctatga
961 attattggga ggatcttgct gtttcgggag ctaataacaa tcccaacttc ttctgccctg
1021 ccttgttctt ctttgttcgg ttcccgttcg caccttctgc tgcgatgact cttcagtttt
1081 cagttaggac agtgttttac ttgaccttcc gtaaccctgc tccatttgag tctgttcctg
1141 ctcctcctgc tgctgctgct gctgctgctg ctgtttctga gcctgctctt cctcgagaat
1201 ttttagagtt tactgatgat gatccacacc ccctatctgg ttccaccgca cctcctctct
1261 ttgaaactta actgttcaaa ataattaacg cgcagctccc ccctcgttaa tcttcctttc
1321 attggagaga tagggtaggg ttttagggaa tcaccttgtc agactgtggc gcctttagag
1381 cgcagcgccg aaggcgcgga gcgtgcgcca cagtgtgtca agctgatgga caaaacccta
1441 ccctatctgt agatgaaagg ggggttagag gggggatgcg gagcgtttag ggctattccc
1501 ccatcacttg gggctatgtt tatgttggtt ctgtttatgt tgcgttctgg ttgcggggcc
1561 atcttagatg gcccctttct ggttgctctg ctgctggttg ctctgctgct ggttgctctg
1621 ctgctggttg ctggttgctg gtagagctgc tgctggttgc ttgttgctag taatatagcg
1681 ctctaagcac tataaaattt tttctattag attatatata aattacttaa atggacataa
1741 gaaatagagc atttttctat taggttaaaa cgctctatcc ttgcggtata aggggcgcgg
1801 gttgagtatt acccgcgccc ctctataccg cccatagttt cagttgtcgt aattgggaga
1861 cgaattttct tttagttgag tgagtgtctt gtgtgttgtg tgctttgtgt ttagaagagg
1921 tcgatgtctt gccaagatgc gttttgtctg cggagagctt gagggtgatg gatgtctggc
1981 tcgaagtcgt cgtctcgagg agtgtgagtt ctggctggtg ctccgggaac tcttctgcct
2041 cctctaagcg ttgcgttggt tgctcttctg gttgcgctgc tgctgctgct gctgctggtt
2101 gctcttcagg catttccagg atcctcctta cctctctcag gagccacttg cgtgtctcct
2161 ggatccactc tggtgtgatt gcaccaagct gtggtggttc caggtagtgt ccgcaggtgc
2221 gctcaagtgc accgtgatgc caagcaggat ggtatcccag gcggtcgtag agcgccagga
2281 gtgcgtcgtg tctcttagcc tcctcaggga ttccaggtac cttgttcctg taccagtcct
2341 cagggcagga gttggaggtg atgaatatca cctcgaagag acagggccta gttccgccct
2401 tgacttccag gctctgtggg tacggatcta ggaggttgag catcttctgg agcgggatct
2461 gtcccgcgaa ctcctcaatg caggctacct tggagcaagg gttctgccac cagaatcccg
2521 cgttgcccat gatgagcctg gcgcagtcag ggaagaggta gttgatcagg taggatttgc
2581 cgcatccagg agggccgacc agggtgatga tcttcaggtt tggcctgaag ggaccaagga
2641 cgtctgtcgt gatgagcttg tacgccgaga tgaagttgcg agtgcacagg atctctgcag
2701 ggatatcaga tggccgcttg taccctgctt tgatctgctc tagcatttcc tccgcgtctt
2761 gctccttgtc cttcttctct cttggtggct ttccgtgttc gaagcgtaga cctccgggga
2821 cgtgagtgtc gtccttcctg cagtagtctg ctgcttgctt gtccgttccg cgtgtctttt
2881 cccagtgcgc cctctcgttc atgttcctct tgagccaagt aactctgttt cttttcttta
2941 ggatgaggaa cccctggtag tgcacggttc cgttctcgcc tctctcttcc tggacgatga
3001 tgtaggagag ttgttccaga gcgtctggac tttcccagaa cctgtctctc tctgtcgggt
3061 tgttgatggt gaagcaccac cttttcactt gtgtctcttg tggcatttct atatctcttc
3121 ttgctctaaa atttgcgacg gaatttgaaa tcacaaagtt ggatctcata att
//
