LOCUS NC_040438 2532 bp ds-RNA linear VRL 13-SEP-2019
DEFINITION Chicken picobirnavirus strain PBV/CHK/M3841/HUN/2011 segment RNA1,
complete sequence.
ACCESSION NC_040438
VERSION NC_040438.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken picobirnavirus
ORGANISM Chicken picobirnavirus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes;
Durnavirales; Picobirnaviridae; Picobirnavirus.
REFERENCE 1 (bases 1 to 2532)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-SEP-2019) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MH327933.
##Assembly-Data-START##
Sequencing Technology :: ABI PRISM; Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2532
/organism="Chicken picobirnavirus"
/mol_type="genomic RNA"
/strain="PBV/CHK/M3841/HUN/2011"
/isolation_source="faecal sample"
/host="chicken"
/db_xref="taxon:1930304"
/segment="RNA 1"
/country="Hungary"
/collection_date="2011"
gene 51..182
/locus_tag="EXI53_s1gp1"
/db_xref="GeneID:41703989"
CDS 51..182
/locus_tag="EXI53_s1gp1"
/codon_start=1
/product="hypothetical protein"
/protein_id="YP_009551571.1"
/db_xref="GeneID:41703989"
/translation="MVFTQSTKTSTKTFTYLCNGLKTGRVHGLKRYKVLTSQGGVYL"
gene 179..904
/locus_tag="EXI53_s1gp2"
/db_xref="GeneID:41703988"
CDS 179..904
/locus_tag="EXI53_s1gp2"
/note="ORF1"
/codon_start=1
/product="hypothetical protein"
/protein_id="YP_009551572.1"
/db_xref="GeneID:41703988"
/translation="MTSNQIAWQNMIEAKRSNAAREAETYRSNTAKEQEAYRHNLATE
QQAKWYNEASIAETRYKTDTDAAARISSANITAQANRYATDAKIAADWERALLDAETR
KYAADRNFEGALVGGGTHIVSSLIPGIIGAVTGAVAGGMAAKDKDSGAGKGGKPPKGG
TTANVRETTPQRTEVSAYEKQLGSEGRVIQPDDQGYFFGSNTATVAGAAIGLGLLGSV
AMNGGGGGLGVRRKIFDPAFTSK"
gene 922..2502
/locus_tag="EXI53_s1gp3"
/db_xref="GeneID:41703990"
CDS 922..2502
/locus_tag="EXI53_s1gp3"
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="YP_009551573.1"
/db_xref="GeneID:41703990"
/translation="MRKGKNQGHSNKSTSTEKNRTSGGKYQRQQKDSECEEKKIPDGK
GNHVSWYTANPQMVKDACSIPFAERLGTEVSTFNTDTYVFPGIMAYDWIPTVGTAVNA
TDPINVAALKLYTYIRHAKSGSPTYDAPDLANYFIAVDSLINFWATVRRAYGVLMWNS
VYNVYMRQYVFEAMGFDYDYFVSHIADFRNFINYMAHQINAVPIVKDLGWYARHRMLN
DYVYADSQSTQRAQVFMARQRYYWLFNEHVAGSPARFDLTRMPDKFTTIEQLREFFVS
LANPVLGSESMGVIYSDLLRVYGTERLEILPMVDESYVTLPLFDPAIMEQFRNCVTPL
PWTGCDFSGLMTTDADTNAIVSRIQILQVPAKYKTFDHDYLYYARVDMPTPEEVMVGT
RWMAVWEHSDDTTLDLVSCGCDVPISMHIYTLHYTGGGQPTLKNETLYSDAFVDFTND
DAQGLERFVNGLISMSPFNEHPRRYIWLSDNYAAVAKPMGMCDNYTVVEPRSLTQMHT
IAMLGAFDLKETVRPYGR"
ORIGIN
1 gtaaatttaa acgtttgcaa aaattctatg gaaaggagga ctgacagtaa atggtattta
61 cgcagtctac aaaaacatca actaaaacct ttacctatct gtgcaacggc ctgaaaactg
121 gcagagtaca tggattgaaa aggtataagg tacttactag tcaaggaggt gtttatttat
181 gactagtaat caaattgcgt ggcagaatat gatcgaagcc aagcgatcaa acgctgcgcg
241 tgaagcagag acctatcgct ctaacactgc taaagagcaa gaggcgtatc gccataatct
301 tgctactgaa cagcaagcta agtggtataa cgaggcgtcc atagcggaaa cacgctataa
361 gacggacact gatgcagcag ctaggatttc ctcagctaac attactgcac aagctaatcg
421 ttatgcaacc gacgctaaaa ttgctgcgga ctgggaacgt gctctactgg acgcggagac
481 tagaaagtat gccgcggaca gaaactttga gggtgccttg gttggcggtg gtacccacat
541 tgtaagcagt ctaattcctg gtatcattgg tgcagtaact ggagctgtcg ctggaggtat
601 ggcggcaaaa gataaggatt ctggtgctgg aaagggtggt aaaccaccca aaggtggcac
661 aactgcgaat gtgcgggaga caacacctca acgtactgag gttagtgcct atgagaagca
721 gctaggttct gaagggcgtg taattcagcc ggatgatcaa ggctacttct ttggtagcaa
781 tactgctacc gtagcaggtg ctgctatagg tttaggtcta ttaggcagtg tagcaatgaa
841 tggcggggga ggcggtcttg gcgtgcgtcg gaaaattttt gatcccgcat tcacaagtaa
901 gtaattaagg agtgtgttaa catgcgcaaa ggtaaaaatc agggtcattc gaataagtct
961 acctctactg agaagaaccg tacttctggg ggtaagtatc agcgtcaaca gaaagactcc
1021 gagtgtgaag aaaagaaaat ccctgatggg aagggcaacc atgtgtcttg gtacacagca
1081 aatccgcaga tggttaagga cgcttgctcc attcctttcg cggaacggtt gggtactgaa
1141 gtatccacct ttaatactga tacctatgta tttcctggta tcatggctta cgactggatc
1201 cccactgtgg gaactgctgt aaatgcaaca gatcccatca acgtagcagc gttgaagctg
1261 tatacgtata tccgtcatgc taaatctgga tcccctacgt acgatgcccc cgatctggct
1321 aactacttca tcgctgttga tagcctgatc aacttctggg ctacagtacg gcgtgcgtat
1381 ggcgtcctga tgtggaattc cgtgtacaat gtgtacatgc ggcagtatgt attcgaagct
1441 atggggttcg attacgacta ctttgtgtct cacatcgctg acttccggaa cttcatcaac
1501 tacatggcac accagattaa tgccgtaccc attgtgaaag acctgggttg gtacgctcgg
1561 catcgtatgc tgaacgatta tgtgtacgct gattctcagt ctacacagcg tgcccaagtt
1621 ttcatggcgc gacagagata ttactggctg ttcaatgagc atgttgcggg aagtcccgct
1681 agatttgatc ttaccagaat gcctgataag ttcactacta ttgaacagtt gagggaattc
1741 ttcgtgagct tggcaaaccc tgttttgggt tctgaatcca tgggagtcat ttattccgat
1801 cttctgcgtg tctacggcac cgaacggttg gaaatattac ccatggttga tgagtcctat
1861 gtgactctgc ccctattcga tcctgcaatt atggagcagt ttcgaaactg tgttacacct
1921 ctaccttgga cggggtgtga cttctccggt ctcatgacta cggatgcaga cactaacgcc
1981 attgtgtctc gtatccaaat tcttcaggtc cctgcaaagt acaagacttt cgatcatgac
2041 tacctctact acgctagagt ggatatgccc actcctgagg aagtgatggt tggcaccaga
2101 tggatggcag tgtgggaaca ttccgatgac acaactttgg atctcgtatc ctgtggctgt
2161 gacgttccta tctccatgca catctacacg cttcattata caggtggtgg tcagcctacc
2221 ctcaaaaatg aaaccttgta ctcggatgca ttcgtggact tcacaaatga tgatgcccag
2281 ggtttagaga gattcgtgaa tggacttatt tctatgtctc cgttcaatga gcatcctcgt
2341 agatacatct ggttgagtga caactacgct gccgtagcaa agcctatggg tatgtgtgac
2401 aattacactg tagtggagcc tagatctctt actcagatgc acacgatcgc tatgcttgga
2461 gcattcgatc ttaaagagac cgtgcgtcct tatggacgtt aacttagcgc gtgtggacat
2521 atgtccacat gc
//
