LOCUS       NC_040639               1778 bp    DNA     circular VRL 12-SEP-2019
DEFINITION  Chicken associated cyclovirus 2 strain RS/BR/2015/4R, complete
            genome.
ACCESSION   NC_040639
VERSION     NC_040639.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Chicken associated cyclovirus 2
  ORGANISM  Chicken associated cyclovirus 2
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus
            naahoohai.
REFERENCE   1  (bases 1 to 1778)
  AUTHORS   Lima,D.A. and Roehe,P.M.
  TITLE     A case-control study in search for viruses in malabsorption
            syndrome affected and healthy chickens
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1778)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2019) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1778)
  AUTHORS   Lima,D.A. and Roehe,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2018) Departamento de Microbiologia, Imunologia e
            Parasitologia, Universidade Federal do Rio Grande do Sul, Sarmento
            Leite, 500, Porto Alegre, Rio Grande do Sul 90050-170, Brazil
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to MG846358.
            
            ##Assembly-Data-START##
            Assembly Method       :: MetaSPAdes v. 3.10.1; Geneious v. 9.1.8
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Chicken associated cyclovirus 2"
                     /mol_type="genomic DNA"
                     /strain="RS/BR/2015/4R"
                     /isolation_source="feces"
                     /host="Gallus gallus"
                     /db_xref="taxon:2109365"
                     /country="Brazil"
                     /collection_date="2015"
                     /collected_by="Diane Lima"
     gene            248..1039
                     /locus_tag="EXJ93_gp1"
                     /db_xref="GeneID:41701958"
     CDS             248..1039
                     /locus_tag="EXJ93_gp1"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="YP_009552746.1"
                     /db_xref="GeneID:41701958"
                     /translation="MAFFPRRRRLFRRRPRYNLKRRYFRRRRRFMRSSRATTRHELSR
                     GGQLFTRLHQSYILNSTTGRTIYLAPQLQSFTHYTNFAQFWSSIRVWKIAYKITPVIT
                     ENVPIDNAGATYVLSFGRHVGSIYYDDQFPGAANTGVAQSYYDEISNFPNSKSTSITK
                     PLRFSFVPKTVVNAVGVNGTITGKGWVARRKLDCDTSVGTSLYGLVYCYEGQQPESTN
                     IQVRVDCYIYATFYEYRQFQYSPTLEKIDLNKMDINKIDDKKTFM"
     gene            complement(1041..1778)
                     /locus_tag="EXJ93_gp2"
                     /db_xref="GeneID:41701957"
     CDS             complement(1041..1778)
                     /locus_tag="EXJ93_gp2"
                     /codon_start=1
                     /product="replication associated protein"
                     /protein_id="YP_009552747.1"
                     /db_xref="GeneID:41701957"
                     /translation="MLRARRFGSIKKILGHRIHIERSNGSDVDNQKYCSKGGDFWEHG
                     SPQGQGKRNDLISIVEEIKSGTGLVEICENHTESFIRYHSGIEKAYRYIGRGCNDRNW
                     KTKVFTPQTSWGASLMFFLHVFYGATGTGKSRLAALRCSGRRVYYKPHDKWWDGYDGH
                     ECVIIDDFYGWIPYDELLRITDRYPHRVAIKGAMIQFLAKDIYITSNKHPRDWYNHLW
                     FQDNQYAALKRRIDEHICMGEGFNKEL"
     misc_feature    complement(1158..1412)
                     /locus_tag="EXJ93_gp2"
                     /note="RNA helicase; Region: RNA_helicase; pfam00910"
                     /db_xref="CDD:425942"
ORIGIN      
        1 gttaaagaag cattgtaagt gcggtgttga agttgttgga gcaacttctc tcccgatgat
       61 agcatatctg caagagttac tagcgaaatt tcttgctgcg gcatattctt cgtcacttgg
      121 attattaagt gtcacacaaa aacgtttgaa aatcgtgctg ttttgttgcc gaggcatagt
      181 attaccctcg gcaacttcgt tacatctata tatactcaga aacccgtcag gccagtttag
      241 tcgtgggatg gccttctttc cgagaagacg tcgccttttt aggcggaggc ctcgttataa
      301 tctaaaacgt cgttattttc gtcgccgacg gcgctttatg cgctcctcaa gggcaaccac
      361 ccgacatgaa ttatctcgtg gtggacaact ctttactcgt cttcatcaat cctatatact
      421 gaattctacc actggaagaa cgatttatct tgccccccag ctgcaatcgt ttactcatta
      481 tactaacttt gcgcaatttt ggtcgtctat tcgtgtttgg aagattgcat ataaaataac
      541 acctgttatc accgaaaatg tacctatcga caatgccggc gccacctatg tcttatcctt
      601 tggccgtcat gttggaagca tatattatga cgatcagttt cctggggctg ctaatactgg
      661 cgtggcgcaa tcatactacg acgaaatatc aaactttccc aattcaaaat ctacttcaat
      721 aacgaagcca ttacgtttct ctttcgttcc gaaaacggtc gttaatgctg ttggagttaa
      781 tggcactata actggcaaag gctgggttgc taggcgaaaa cttgattgcg atacatctgt
      841 tgggacttca ttatatggac ttgtttattg ctatgaaggg caacaacctg aatcgactaa
      901 tattcaagtg cgtgtggatt gctacatcta tgcaaccttt tacgaatatc gacaatttca
      961 atattcacct acccttgaaa aaattgattt aaacaaaatg gatatcaaca aaatagatga
     1021 caaaaagaca tttatgtgaa ttataattct ttattaaaac cttcacccat acaaatatgt
     1081 tcgtcgattc ttctttttaa agcggcatat tggttatctt ggaaccatag atgattatac
     1141 caatcccttg gatgtttatt cgatgttata tagatatctt tggctaaaaa ttgaatcata
     1201 gcacctttga ttgctactct gtggggatat cggtcagtga ttctgagtaa ctcgtcataa
     1261 gggatccatc cgtagaaatc gtcaatgatg acgcattcat gtccgtcata tccgtcccac
     1321 catttgtcgt gaggcttgta ataaactctt ctcccagaac atcgtagagc agccaaacgt
     1381 gattttcctg ttccagtagc tccatagaag acatgcaaaa aaaacattag tgaggccccc
     1441 cagcttgtct ggggggtaaa tacctttgtt ttccaatttc ggtcattaca tcctcttcca
     1501 atatatcgat aagctttttc aataccactg tgataccgaa tgaatgactc ggtatgattc
     1561 tcacagattt ccacaagtcc agtgcccgat ttaatctctt caacaatcga tataaggtca
     1621 ttacgttttc cctggccttg aggacttcca tgttcccaaa aatcacctcc tttcgaacaa
     1681 tatttttgat tgtcgacatc agatccattg cttctctcaa tgtgaattcg gtgtcccaga
     1741 atcttcttaa tgcttccaaa ccttctggcg cgtagcaa
//