LOCUS       NC_040845               1706 bp    RNA     circular VRL 12-SEP-2019
DEFINITION  Avian HDV-like agent, complete genome.
ACCESSION   NC_040845
VERSION     NC_040845.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Avian HDV-like agent
  ORGANISM  Avian HDV-like agent
            Viruses; Ribozyviria; Kolmioviridae; Deltavirus.
REFERENCE   1  (bases 1 to 1706)
  AUTHORS   Wille,M., Netter,H.J., Littlejohn,M., Yuen,L., Shi,M., Eden,J.-S.,
            Klaassen,M., Holmes,E.C. and Hurt,A.C.
  TITLE     A divergent hepatitis D-like agent in birds
  JOURNAL   bioRxivorg (2018) In press
REFERENCE   2  (bases 1 to 1706)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2019) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1706)
  AUTHORS   Wille,M., Netter,H., Littlejohn,M., Yuen,L., Shi,M., Eden,J.-S.,
            Klaassen,M., Holmes,E.C. and Hurt,A.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-SEP-2018) WHO Collaborating Centre for Influenza,
            Peter Doherty Institute for Infection and Immunity, 792 Elizabeth
            Street, Melbourne, Victoria 3000, Australia
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to MH824555.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity v. 2.1.1
            Coverage              :: 42x
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1706
                     /organism="Avian HDV-like agent"
                     /mol_type="genomic RNA"
                     /isolation_source="cloacal swab"
                     /host="dabbling duck"
                     /db_xref="taxon:2364132"
                     /country="Australia"
                     /collection_date="2013"
     gene            complement(1033..1590)
                     /locus_tag="EXL71_gp1"
                     /db_xref="GeneID:41702877"
     CDS             complement(1033..1590)
                     /locus_tag="EXL71_gp1"
                     /codon_start=1
                     /product="HDAg-like protein"
                     /protein_id="YP_009553679.1"
                     /db_xref="GeneID:41702877"
                     /translation="MENKEESQKKKRGREETLQKWVDDRKRKRELEEELEKLRKRIKD
                     RERKNPWLGNLKGMLKQDSGGGQEKKKEAAEPMDTGESPKKKKKKDYEGLSFTPEEKQ
                     RHKRKCDLENKKKQLNAKGKQLTSQEEDELRNLQEEDKKRLLKKREERERRSGGVNLF
                     GSASPSTSGGGNASSTQGLRLPWQK"
     misc_feature    complement(1054..1590)
                     /locus_tag="EXL71_gp1"
                     /note="Hepatitis delta virus delta antigen; Region:
                     HDV_ag; pfam01517"
                     /db_xref="CDD:426302"
ORIGIN      
        1 aggacgagga acagaatccg aaggggcacc gagacacggc tatgagaaag gagaaccgag
       61 acgtgcagag agtgcccgaa atgagaccag aacttgggag ccgaaagatg aggctgcact
      121 cttgagaatg tcttaagaat aggatgatcc ggagaaacgg aacaggattg gaaaatttgg
      181 caaagtcggt cgccggatgg aatgagagct acccaaaagt gaagaattga attactttgg
      241 gccagctctc tctccactcg gagaaacgac gagcgacaac agaaggtgcg aatgggaatg
      301 atagaagaac agagcagcga atctcaaatg ttcaaacctg aactcagcgg atgcgacagg
      361 gcagggatct cagggtagac aagtatcttc atgaagtgga agtcgagcaa tcggagggga
      421 gttccgccct ttgcaggagt tgtccctctt tctctcttgg tatggaagaa taagcttgcc
      481 agcccgagag ggccgttccc ccgaggcgga tgattcagaa agcaatcgga gaagaggaaa
      541 acagaaagag agtaaagccg gaggagagct gggaggaccg gagttcacag cttacctgat
      601 aaaataggtt ggtgggaatc tcctctctaa agggaatctt acctgtgttc ctcttcttgg
      661 acggcgaagg tgccctcctc ctcgcggggc cgtccgggca acaaatccta gagatcgagt
      721 cgatcactag agatttggcg aagaggcacc atttcctata gagattcttt ccaaagaaag
      781 aaatctcttg gattgggagc tcccttcagc caatcctagg atctcacaag atctactatg
      841 gattgcccag gccggaccac ggggaggtag gagcttcctt cgccggcccg aagagaggac
      901 acgatttggt aagtaattca tctttattga gagaacccac caccattttc aggaattgct
      961 ggagactccg gccgccttca acctctcccg gtgtctcttc tctcgcttcc tccctcctca
     1021 ttttgctcct gatcatttct gccaagggag tctgagccct tgggttgaag aagcatttcc
     1081 tccaccagag gtggagggac tagcgctccc aaagaggttc actcccccac tccgacgttc
     1141 tcgttcttcc cttttcttca gaagacgttt cttgtcttct tcctgtagat tccgcagctc
     1201 gtcttcctcc tgagaagtca attgtttgcc tttggcattc agctgcttct tcttattctc
     1261 cagatcgcat ttccttttat gtcgctgctt ttcttcaggc gtgaaggaga ggccctcgta
     1321 atccttcttc tttttctttt tggggctctc tccagtatcc atcggctccg ccgcctcttt
     1381 tttcttctcc tggcctccgc cggaatcctg cttaagcatt cccttcagat tgccaagcca
     1441 tggattcttt ctctcccggt ccttgattct ttttcggagc ttctctagct cttcttcgag
     1501 ttctctcttt cgcttccggt catcgaccca cttctggaga gtttcctcac gtcctctttt
     1561 cttcttctgg gactcttcct tgttctccat tttggggcga gaggcgcgcg gagagaagtt
     1621 ttctactttc tcacaagaga ttgagaaact ctcccggccc tctgtccctc cttggaggca
     1681 aggagagcta accagcgaga gtaagt
//