LOCUS       NC_055149               2080 bp    DNA     linear   VRL 07-JUN-2021
DEFINITION  Rodent associated circovirus 5 isolate RtNe-CV/YN2013, partial
            genome.
ACCESSION   NC_055149
VERSION     NC_055149.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Circovirus gnaver
  ORGANISM  Circovirus gnaver
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Cirlivirales; Circoviridae; Circovirus.
REFERENCE   1  (bases 1 to 2080)
  AUTHORS   Wu,Z., Lu,L., Du,J., Yang,L., Ren,X., Liu,B., Jiang,J., Yang,J.,
            Dong,J., Sun,L., Zhu,Y., Li,Y., Zheng,D., Zhang,C., Su,H.,
            Zheng,Y., Zhou,H., Zhu,G., Li,H., Chmura,A., Yang,F., Daszak,P.,
            Wang,J., Liu,Q. and Jin,Q.
  TITLE     Comparative analysis of rodent and small mammal viromes to better
            understand the wildlife origin of emerging infectious diseases
  JOURNAL   Microbiome 6 (1), 178 (2018)
   PUBMED   30285857
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2080)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2021) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2080)
  AUTHORS   Wu,Z., Du,J. and Jin,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2016) MOH Key Laboratory of Systems Biology of
            Pathogens, Institute of Pathogen Biology, Chinese Academy of
            Medical Sciences & Peking Union Medical College, No. 6 Rongjing
            East Street, Yizhuang, Beijing 100176, China
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to KY370027.
            
            ##Assembly-Data-START##
            Assembly Method       :: DNASTAR v. 7.0.1
            Sequencing Technology :: Sanger dideoxy sequencing; Illumina
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Circovirus gnaver"
                     /mol_type="genomic DNA"
                     /isolate="RtNe-CV/YN2013"
                     /host="Niviventer eha"
                     /db_xref="taxon:3052122"
                     /country="China"
                     /collection_date="Jul-2013"
     gene            1..756
                     /locus_tag="KM492_gp1"
                     /db_xref="GeneID:65099725"
     CDS             1..756
                     /locus_tag="KM492_gp1"
                     /codon_start=1
                     /product="Rep"
                     /protein_id="YP_010084720.1"
                     /db_xref="GeneID:65099725"
                     /translation="MFKGGVVGNAKNDYNILQVKKLSGLARTHLEPALGSPEQASEYC
                     QKDGDYIEFGQRGKQGKRTDLDQAVSVLRESNGDLRQLAETCPVAYLKYSSGFQKLCD
                     VMQWGQNRDFKTKVIVLIGPPGCGKTRQVLGSVGGDLSKVYFKPRGPWWDGYVGQVVT
                     CLDDFYGWIPYDELLRVCDRYPLKVPIKGSFVNFVSRTIYITSNVPPEEWYSRENFRG
                     RYEAFFRRIDEYLTWSEESGQFASGNPAYRISY"
     misc_feature    349..612
                     /locus_tag="KM492_gp1"
                     /note="RNA helicase; Region: RNA_helicase; pfam00910"
                     /db_xref="CDD:425942"
ORIGIN      
        1 atgtttaagg gtggggtggt gggaaatgca aaaaatgatt ataatatttt gcaggtgaaa
       61 aagttatcag ggcttgcaag gacccatttg gagcccgccc tggggagtcc ggagcaagcc
      121 tctgagtatt gtcagaagga tggagattac attgaatttg gccagagagg taaacaagga
      181 aagaggactg acctggatca agctgtgtct gttctgagag agtccaacgg agatctgcgg
      241 caactggctg agacctgtcc tgtggcttac cttaaatact caagtggatt tcagaagcta
      301 tgtgatgtca tgcaatgggg gcagaaccgg gattttaaaa caaaagtgat tgtattgatt
      361 ggtccacctg ggtgtggtaa aacccgccaa gtgttgggga gtgtgggtgg ggatttatct
      421 aaggtttatt ttaaacccag gggtccttgg tgggatggat atgttggaca agttgtgaca
      481 tgtctggatg atttttatgg gtggatacct tatgatgagt tgttgagggt ttgtgataga
      541 tatcctttaa aggtacctat taaaggttct tttgttaatt ttgtatctag gaccatttat
      601 atcacctcta atgttcctcc cgaggagtgg tattcaagag agaattttag aggcagatat
      661 gaggccttct tccgaagaat tgatgagtac cttacctgga gtgaggagag tggccagttt
      721 gccagtggga acccagccta ccgcatctcc tattagcatg gcgcgggaaa aaattagagc
      781 actcatttgt ttgcttgatg aaattaatgt ttattatgga aattaaagtt gtcccatgaa
      841 agtaacatat acagttgtct ttgagttcat tctcactttg aggggattgt ggatccaggg
      901 cacctcatca tctacttcca ttccattgtt gtctgtggag ggtgggttga gggtattcat
      961 ggcatctaag ttgaattttg tccaaagccc caaatgataa acagaccagt catctatggt
     1021 aatccaaggg ttctttcttt ggaaccacca attttctatg cctggttcat ctatacttgg
     1081 aatagtgttc ccatgttttt ctagtgtggt catgggtgtg ggcttaaaat accttttatg
     1141 gtatctggtg ctctgcaagg ctctatgtgt aaagctgtta attccaggag gaaaatatct
     1201 ccctgtagtc cagtgagggt ttttgtcagg tttgttaacc ctgtctatgt aggaaaagcc
     1261 ccttagtatg aatgttgttc cgtctgttct ttgtggtgtt agttctaatt tgaccttagt
     1321 aattttgaag tactggaaag ttagattagg gggtttgtct tcattcatgt ggtcttgcag
     1381 agtccaggac caatgcaaat tataccattc atagaattgg tttacagttt tagcttgcac
     1441 agcatctttt gtgtaattgt cagggacttg tttgccaaag aaattgttcc attgctcaaa
     1501 cttgagtctg gtgaaagcca tcctcctgtg gtggcggagt gggcggtgtg ggcgggcatg
     1561 cctataatat cttctcctga agtgcctccc tctccttcta tatcttctat atcttctgtg
     1621 cttcatccta gagaagtggt ggtacagtat tacccaccac ttcagtacca gcaccctacc
     1681 caagccgtgt taaaatggca agaaatgagg tgcccttttt taagtatcag ggttgtagtg
     1741 aaggtttaga gtgggttttg atagatatgc ctggagagtt ttttgggtgt gagttgtcta
     1801 gtgagggtat tgctaatcag agagaatatg agaatgaaga taagagagga gtttggttta
     1861 ttcctaagca tattttttgt tcttcagccc cgggaggctg ccagggtaag gtggtgcttt
     1921 actctaaaca actggacagc agaagagtgg gatgctatta cacagcagtt aggcccatca
     1981 gtgaagtacc tctgtgtggg caaagaggtt ggagaaggag gtaccccaca cttgcaagga
     2041 tatttggagc tcaagagaag gctgcggctg cagcaggtaa
//