LOCUS NC_055488 5091 bp DNA circular VRL 07-JUN-2021
DEFINITION Mus musculus polyomavirus 3 isolate MPoV3/NYC/2015/K003/3347,
complete genome.
ACCESSION NC_055488
VERSION NC_055488.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Mus musculus polyomavirus 3
ORGANISM Mus musculus polyomavirus 3
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Papovaviricetes; Sepolyvirales; Polyomaviridae; Betapolyomavirus;
Betapolyomavirus tertimuris.
REFERENCE 1 (bases 1 to 5091)
AUTHORS Willams,S.H., Che,X., Garcia,J.A., Klena,J.D., Lee,B., Muller,D.,
Ulrich,W., Corrigan,R.M., Nichol,S., Jain,K. and Lipkin,W.I.
TITLE Viral Diversity of House Mice in New York City
JOURNAL MBio 9 (2), e01354-17 (2018)
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5091)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2021) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5091)
AUTHORS Williams,S.H. and Lipkin,W.I.
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2017) Center for Infection & Immunity, Columbia
University, 722 West 168th St, New York, NY 10034, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MF175082.
##Assembly-Data-START##
Assembly Method :: MIRA v. 4.0
Sequencing Technology :: Sanger dideoxy sequencing; Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..5091
/organism="Mus musculus polyomavirus 3"
/mol_type="genomic DNA"
/isolate="MPoV3/NYC/2015/K003/3347"
/isolation_source="faecal pellet"
/host="Mus musculus"
/db_xref="taxon:2171394"
/country="USA"
/collection_date="27-Aug-2015"
gene 570..1706
/locus_tag="KM653_gp1"
/db_xref="GeneID:65102068"
CDS 570..1706
/locus_tag="KM653_gp1"
/codon_start=1
/product="VP2"
/protein_id="YP_010086827.1"
/db_xref="GeneID:65102068"
/translation="MGALLAIPELIAAAVEGGAEAIAIAGSESAILTGEGAANLGLLS
ESAAVLDGSIEVSAAAESVLVNTPKVVPELIAIQGGVQAGAGLTGGIASYFLTADSPG
ELPAQQHTSGGRDVQGYNGAQGSMALQGIPLHALEHGVPGIPDWVLQLVPDLPSLQDI
VYRIASGIVSSYYHTGRVIVQRALSEEMQRLLNDLSDGFRYTFETLGRSDPVGAMIDQ
IQSAHRYFRRREQMLLIEGSDPIPFGEIASRAGEIAGNVAETVSNVVVDVANLPRDGY
NALSEGIHRLGQWVQYAGSDGGTGHYSTPSWILYVLQELERELPKIPRTSLKRKDTDN
VHNNNRPKKARARKNPSGPKASKSNQKRRSGSVRRRSTRTNNRV"
misc_feature 942..1652
/locus_tag="KM653_gp1"
/note="VP2/VP3; Provisional; Region: PHA02616"
/db_xref="CDD:222911"
gene 945..1706
/locus_tag="KM653_gp2"
/db_xref="GeneID:65102064"
CDS 945..1706
/locus_tag="KM653_gp2"
/codon_start=1
/product="VP3"
/protein_id="YP_010086828.1"
/db_xref="GeneID:65102064"
/translation="MALQGIPLHALEHGVPGIPDWVLQLVPDLPSLQDIVYRIASGIV
SSYYHTGRVIVQRALSEEMQRLLNDLSDGFRYTFETLGRSDPVGAMIDQIQSAHRYFR
RREQMLLIEGSDPIPFGEIASRAGEIAGNVAETVSNVVVDVANLPRDGYNALSEGIHR
LGQWVQYAGSDGGTGHYSTPSWILYVLQELERELPKIPRTSLKRKDTDNVHNNNRPKK
ARARKNPSGPKASKSNQKRRSGSVRRRSTRTNNRV"
misc_feature 945..1652
/locus_tag="KM653_gp2"
/note="VP2/VP3; Provisional; Region: PHA02616"
/db_xref="CDD:222911"
gene 1570..2607
/locus_tag="KM653_gp3"
/db_xref="GeneID:65102065"
CDS 1570..2607
/locus_tag="KM653_gp3"
/codon_start=1
/product="VP1"
/protein_id="YP_010086829.1"
/db_xref="GeneID:65102065"
/translation="MSTTTTGRKRLGPGKTPVVQKLPRVIKKGGVEVLGAVPQGPTTE
YKVELFVKPAFGKENNGPNYWNHSSPLTGTALTDGDFHLCFSLAEVGLPDIPDQCAED
FMTVWECYRMETELLYSPKVTATGLTDSRINGIQGTQMYFWAVGGSPLDVMYVLPKEN
MRPRGNLNVPDGNHNSVYNSSIFREKLTNETYPIEYWIPDPSRNDNCRFFGRIVGGAA
TPPVVTYSNSSTIPLLDENGVGILCNSQRCYVTSADMTGFLSNRIEAAHGRFFRLHFR
QRKVKNPYTMSLLYKQVLNQNSPPEVVRAQHNVTEVTMEEGQGVAAIHAPVGSCGIVA
QQASSLINVQG"
misc_feature 1591..2517
/locus_tag="KM653_gp3"
/note="Polyomavirus coat protein; Region: Polyoma_coat;
cl27648"
/db_xref="CDD:452766"
gene complement(2697..4091)
/locus_tag="KM653_gp4"
/db_xref="GeneID:65102066"
CDS complement(2697..4091)
/locus_tag="KM653_gp4"
/codon_start=1
/product="large T antigen"
/protein_id="YP_010086830.1"
/db_xref="GeneID:65102066"
/translation="MDKSINLYKKLLSKFKCTFCSRHTYGATGLVFLITPAKHRVTAI
NNYCKAFCTVSFLYCKGVNNPYLCYSRMCDEPFKKVEENVSGGLKENDFKAEDIFGEA
AEQINWRMIADYAQATKQEDVYLLMGHYMQFASEPTKCTICDEKKIKEHCKYHSGHHK
NALLFVECKNQKNICQQAVDTVTAAKRVFQQHKTREELVLLRFKQKLEELNDRLKGES
DIMLFMSGVAWYTCLFEDIDLKVYKILDILTCNVPKKRYVVFKGPINSGKTTLACALL
DLLGGKSLNINVPADKLNFELGCAMDQFMVVFEDVKGSNKDRPDLPKGQGIYNLDNLR
DYLDGCVPVNLEKKHMNKRSQLFPPGIVTMNDYFIPPTLQVRFCKTIIFSVKTYLKDS
LARTQEILYNRVLQSGLTLLLLLIWHRPVSDFAEEIQKDVVYWKECLDKYVSVTDFAQ
MCLNVEQGKNIFEK"
misc_feature complement(2700..>4088)
/locus_tag="KM653_gp4"
/note="large T antigen; Provisional; Region: PHA02624"
/db_xref="CDD:222912"
gene complement(4535..5056)
/locus_tag="KM653_gp5"
/db_xref="GeneID:65102067"
CDS complement(4535..5056)
/locus_tag="KM653_gp5"
/codon_start=1
/product="small T antigen"
/protein_id="YP_010086831.1"
/db_xref="GeneID:65102067"
/translation="MELLGLHMACWGNVPLMRKAFLEKAKEYHPDKGGDENKMKRLNT
LYRKLEEKVHVVQEEAEAEAWDSTKVHSCDGPCCDPRSLVGYVFGEALEDCLLKQWEC
VVQPKTFCKCIHCYLERLHAFRYKISKIPVVWLRCYCFTCYCKWFGKPKDPLSLHYWK
IVLMNSQMGHVGL"
misc_feature complement(4607..5056)
/locus_tag="KM653_gp5"
/note="Small T antigen; Reviewed; Region: PHA03102"
/db_xref="CDD:222986"
ORIGIN
1 catttcaggg caatgctgag cagtgctgca aagcctcctg aagcctccag aagcctccga
61 aagcctctct cctttttctt atttgagaag tgaataagag gcctccagcc tccacttata
121 tctgaaaaaa aggttccttg tgaggattaa atccccaggt gcagtgactt aatgttttga
181 ttgttagaca tgtgtatttg ggctggtttg tgttttgctt ggcttctcta atacacgctt
241 ggctgggttt taaatcctac ttaatcctct tatcagggtg taacctgaaa taatttctcg
301 cttgaccggt tttgcggttt ccaaattacc cgcttcacta agcagcaggg ggcggtgttt
361 acctgtggtt gctatggtgc tcttactcta ttgggtgcgg ctatggtgct cttactctat
421 tgggtgcggc agatgggcgg gtttccgctt caattggtca gtgcttccgc ttgaatgcgc
481 aactcggatg cgcatttccg ccttcgcccg actgggggtt gggttttaca taccaggtaa
541 gcctcatttt gtatttttta cctaggtcta tgggagcctt gcttgcgatt cctgagttaa
601 ttgccgccgc tgttgaagga ggggctgagg ctattgcaat agccggatca gaatcagcta
661 ttttgactgg tgaaggtgct gctaatttag gattactctc tgagagtgcc gctgttttag
721 acggatctat tgaagtgtct gctgcagccg aatctgtttt agttaataca cccaaagttg
781 taccagagct aattgccata caagggggtg ttcaggcagg tgctggtctt acaggtggta
841 tagctagcta tttcttaacc gctgatagtc ctggggaact gcctgcgcag caacacacaa
901 gtggtggacg ggacgtccag ggatacaacg gagcccaagg ctcaatggct cttcagggta
961 tccctttaca cgcattggaa catggagttc cagggatccc ggactgggtc ctccaactcg
1021 tgccagacct gcctagcttg caggacattg tctatagaat tgccagcgga atcgtctcct
1081 catattatca tacgggcaga gtaatagtgc aaagagccct aagtgaagaa atgcaaaggc
1141 ttcttaatga tttaagtgat ggcttcaggt acacctttga aactttgggt aggtctgatc
1201 cagtaggagc tatgattgat caaatacaat cagcccatag gtacttcaga agaagagaac
1261 aaatgttatt aattgagggt tcagatccaa taccttttgg ggaaatagct tcaagggcgg
1321 gtgaaattgc aggtaatgta gcagaaactg taagtaatgt ggttgttgat gtagcaaatt
1381 taccaaggga tgggtacaat gctttgtcag agggcattca taggttaggc cagtgggttc
1441 aatatgcagg gtcagatggg ggtacaggcc actattctac cccttcatgg atattgtatg
1501 ttttacagga attggagaga gagctcccta aaattcctcg tactagtcta aaaagaaaag
1561 acacagacaa tgtccacaac aacaacaggc cgaaaaaggc tcgggccagg aaaaacccca
1621 gtggtccaaa agcttccaag agtaatcaaa aaaggaggag tggaagtgtt aggcgccgtt
1681 ccacaaggac caacaacaga gtataaagta gagttatttg taaagcctgc ttttggaaag
1741 gaaaataatg gccctaatta ttggaatcac agcagccctc taactgggac ggctctgact
1801 gatggagact tccatctttg cttcagtctg gcagaagtag ggctgccaga tatacctgac
1861 caatgtgctg aggacttcat gacagtgtgg gaatgctaca gaatggagac tgagctgctc
1921 tatagtccta aggttactgc tacaggactg actgatagca gaataaatgg cattcaggga
1981 actcaaatgt atttttgggc agtggggggt agtcccctag atgttatgta tgtacttcct
2041 aaggaaaaca tgagacccag aggcaacctt aatgttccag acggcaacca caatagtgtt
2101 tataatagca gcattttcag agaaaaactg actaatgaaa catatcctat agagtactgg
2161 attcctgacc cttcaagaaa tgacaactgc agattttttg gacgcattgt tggaggggct
2221 gcgacaccgc ctgttgtgac atacagtaat tcgagtacca ttcctttatt ggatgagaat
2281 ggtgtcggta tactgtgcaa ctcacaaagg tgctatgtaa cctctgcaga catgacaggg
2341 tttctgtcaa atagaattga agctgcccat ggccgctttt tcagacttca tttcaggcaa
2401 agaaaggtga aaaaccctta tacaatgagc ttattgtata agcaggttct gaaccagaac
2461 agtcccccag aagtagtgag ggctcaacat aatgtaacag aagtgacaat ggaagaaggt
2521 cagggggtgg cagctataca tgctcctgta ggctcttgtg gtatagttgc tcagcaggcc
2581 tctagcctga ttaatgttca gggttagatc tttgtgttgc tgtttactgc tgcttatggt
2641 gctatatgta acaatacttg taaataaata ggcatttatt tgtaaataaa tatattttat
2701 ttctcaaaaa tatttttgcc ttgttctaca ttcaaacaca tttgtgcaaa gtcagtcaca
2761 ctgacatatt tatccaagca ctctttccaa tacactacat ccttttgaat ttcttctgca
2821 aaatcactaa caggtctatg ccatataagg agcaatagca gtgtgagccc actttgcaac
2881 accctattat acagtatttc ttgtgttcta gctagtgagt cctttaaata ggttttaaca
2941 gaaaatatta tagttttaca aaatctgacc tgcaatgtgg gaggtatgaa gtaatcattc
3001 atagttacaa ttcctggggg aaatagttga cttcttttat tcatgtgttt cttctctaaa
3061 ttaacaggta cacagccatc taaataatcc ctgagattgt ctaagttgta gatgccttga
3121 ccctttggaa gatcaggtct atctttattt gaccccttca catcttcaaa tacaaccata
3181 aattgatcca tagcacaccc tagttcaaaa tttaatttat cagcaggaac attaatattt
3241 aaactctttc caccaagtaa atccagtaat gcacatgcca gtgtagtttt accactatta
3301 attggtccct taaacactac ataccttttt ttagggacat tacatgttaa tatgtccaat
3361 attttataca cttttaaatc tatatcttca aataggcagg tgtaccaggc tacaccactc
3421 ataaaaagca taatatcact ttcccccttt agcctatcat ttaattcttc cagtttttgt
3481 ttaaatctaa gaagaactaa ttcttctctt gtcttatgct gctgaaacac tctttttgct
3541 gctgtgacag tatccactgc ttgttgacag atattttttt ggtttttaca ttcaacaaac
3601 agtaatgcat ttttatgatg cccagaatga tacttacaat gttccttaat ctttttttca
3661 tcacatatag tacacttggt gggctcactt gcaaattgca tatagtgacc cattaatagg
3721 tatacatcct cttgtttagt ggcctgtgca tagtcagcaa tcattctcca attaatttgt
3781 tctgctgcct caccaaatat atcttctgct ttaaaatcat tttcttttag acctccagac
3841 acattctctt caaccttttt aaagggctca tcacacattc tagaatagca caaataagga
3901 ttatttacac ccttacagta cagaaaggat acagtacaaa aggctttgca ataattatta
3961 atagcagtta ctctgtgttt tgcaggtgta atcaaaaaaa ctaatcctgt tgccccatat
4021 gtgtgcctac tacaaaaagt gcatttaaat ttagataaca gttttttata caggtttatg
4081 gatttatcca tggtagtgtg aatcacaaaa cttgtaagtg ttctattgct aaatatggcc
4141 tgacttacaa actcatttaa ggcttcagga aatgaaggaa tgtcattttt tttatttttt
4201 ggtggagttg cttgtgagct tgttggtggg ggctcctctt caaattcttc atcacaaaat
4261 agattttctt catcaaatga tgcagatgag gtgctagccc cttgggattg ggattgatat
4321 gattgatatc ctgagtctgg ctggctatct tttttagctg attttctttt tctttcttct
4381 ctgtcccggc gaatttgttc ttcttcccag gctctattga atgtttccca ccactcattc
4441 cattctctag ttccatattt aggaacctgc aataaaaatg gctttttagc aactgtttat
4501 acaaaattaa ctaattatgt taaactcaac ttacctataa ccctacatgg cccatttgag
4561 agttcatcaa cacaatcttc cagtaatgca atgataaggg gtcttttggc tttccaaacc
4621 acttgcagta gcatgtaaag caatagcatc tcaaccatac aacaggaatt ttagatattt
4681 tatatctaaa agcatgcaat ctttccagat aacaatgaat gcatttgcaa aatgtttttg
4741 gctggacaac acattcccac tgcttaagca gacagtcctc aagtgcttcc ccaaaaacat
4801 agccaaccaa ggaccgcgga tcacagcatg gcccatcaca gctgtgtacc tttgtagaat
4861 cccatgcctc tgcttcagct tcttcctgca caacatgcac cttttcttcc aatttcctgt
4921 agagggtatt taatcttttc atcttatttt catctccccc cttatcaggg tggtattcct
4981 tagctttttc taaaaaagct tttctcatca agggaacatt tccccagcat gccatatgta
5041 ggcctaagag ctccattagc tcaatagctt ctccgcggct tatgtgcgat c
//
