LOCUS NC_075342 2343 bp DNA circular VRL 05-MAY-2023
DEFINITION Chicken associated smacovirus strain RS/BR/2015/1, complete genome.
ACCESSION NC_075342
VERSION NC_075342.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken associated smacovirus
ORGANISM Chicken associated smacovirus
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus.
REFERENCE 1 (bases 1 to 2343)
AUTHORS Lima,D.A., Cibulski,S.P., Finkler,F., Varela,A.P.M., Teixeira,T.F.,
Cerva,C., Domingues,G., Loiko,M., Scheffer,C., Santos,H.F.,
Mayer,F.Q. and Roehe,P.
TITLE Fecal virome of healthy chickens reveals a large diversity of the
eukaryote viral community, including novel circular single-stranded
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2343)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2343)
AUTHORS Lima,D.A., Cibulski,S.P., Finkler,F., Varela,A.P.M., Teixeira,T.F.,
Cerva,C., Domingues,G., Loiko,M., Scheffer,C., Santos,H.F.,
Mayer,F.Q. and Roehe,P.
TITLE Direct Submission
JOURNAL Submitted (07-NOV-2016) Microbiologia, Parasitologia e Imunologia,
Universidade Federal do Rio Grande do Sul, Rua Sarmento Leite, 500,
Porto Alegre, Rio Grande do Sul 90035-190, Brazil
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KY086298.
##Assembly-Data-START##
Assembly Method :: Spades v. 3.5.0; Geneious v. 8.1.7
Assembly Name :: Chicken smacoviurs strain RS/BR/2015/1
Coverage :: 22
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2343
/organism="Chicken associated smacovirus"
/mol_type="genomic DNA"
/strain="RS/BR/2015/1"
/isolation_source="feces"
/host="Gallus gallus"
/db_xref="taxon:1932006"
/country="Brazil"
/collection_date="31-Jul-2015"
/collected_by="Diane Lima"
gene 1..777
/gene="REP"
/locus_tag="QKC28_gp1"
/db_xref="GeneID:80521937"
CDS 1..777
/gene="REP"
/locus_tag="QKC28_gp1"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010784667.1"
/db_xref="GeneID:80521937"
/translation="MNKQAYKDLGECQSMQTYMLTIPRKVHKRTLKIMLEQNDVKKYI
IAKERGFGGYEHWQIRLKTSNKNFFIWCKINIPEAHVEEAMDTWDYERKEGVYWTSDD
TNEIRALRFGKPNLKQKRVLKLLKYQGDRNILVWYDPVGKAGKSWIVGHLWEQGKACY
VPPTLGTPKEIIQWVHSAYDNEGLIIIDIPRSWKWNEALYTAIETIKDGLVYDPRYSA
RMKNIRGVKVLVMTNTYPRVSALSEDRWDIINEGGEAPLS"
gene complement(987..1961)
/gene="CAP"
/locus_tag="QKC28_gp2"
/db_xref="GeneID:80521936"
CDS complement(987..1961)
/gene="CAP"
/locus_tag="QKC28_gp2"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010784668.1"
/db_xref="GeneID:80521936"
/translation="MNSQTYSYFLDLQTRSDRVSVVKVAAGGREAMRRLLPFFAAYKY
FKLGRVKLKFVPASTLPVDPTGLSLEAGEQTVDPRDQFNPGLVRITNGEYWGNPQDDS
QVTNMDRYYQLMLDNRWYKFNLQSGFERHATPLYWGIGQIRQDIFPGIAQNYPGRQAI
GESEVPQVISSKTYISKDAQGSVKTNLIWNSDSSGWGIFQVGERKELGWLPTDYTLNE
QLGNFPGDTGVNVPPEIELLTIILPKAYKTIYYYRVYVTETVHFKDPVAMNTVPMSDS
TQLFNVGINGYDRFWNVLAPGQASYNVTPITSTQQYNDGDGYRFREGE"
ORIGIN
1 atgaacaaac aggcatataa agatttagga gaatgtcaaa gcatgcaaac ttatatgctg
61 acaataccaa gaaaggtaca caaacgtaca ttaaagatca tgttagaaca aaatgatgta
121 aaaaaataca tcattgcaaa agaacgtggt tttggagggt atgaacattg gcaaataagg
181 ctaaaaacaa gcaacaagaa ttttttcata tggtgcaaga taaacattcc tgaagctcat
241 gtagaagaag caatggacac atgggattat gagagaaaag aaggtgtata ttggactagt
301 gatgatacca atgagataag agcattaaga tttggaaaac cgaatttaaa acagaaacga
361 gtgttaaagc tcctcaaata tcaaggtgat agaaacatac tagtttggta cgatcccgtc
421 gggaaagccg ggaaatcgtg gattgtgggg catttatggg agcagggtaa agcatgttat
481 gttccaccaa cattagggac accaaaagag atcatacaat gggttcattc agcatatgat
541 aatgaagggt taatcataat tgacatacca agatcatgga aatggaacga agcattatac
601 acagccatag agacaataaa agatgggttg gtatatgatc caaggtattc agcaagaatg
661 aaaaacataa gaggagtaaa ggtcttggta atgacaaaca catatccaag ggttagtgca
721 ctgtcggagg acaggtggga cataataaat gaggggggcg aggctccttt atcgtaacac
781 tatcggagcc tctaccccct ttagggggta ggggtttgat tatcctcggt caaagcagcg
841 tgtacgtcgg aagcttgttc cggggacaaa ggcaatatga taccctcatc ggatacacca
901 acaggtgtat cctcagaggg agggtcataa ggctgcataa aagccatagg gcgaagttta
961 acaccattaa ggtagatgta aaccatttat tctccctccc tgaatctata accatctcca
1021 tcattatact gttgagtact agtgatcgga gtaacattat agctagcttg acctggtgcc
1081 aagacattcc aaaacctatc atagccattg ataccgacat taaagagttg tgtagaatcg
1141 gacataggta cggtattcat tgctactgga tccttgaaat gaactgtttc tgttacatat
1201 acacggtagt agtagattgt tttatatgcc ttaggtaaga taattgttaa gagttctatc
1261 tctggaggaa cattaactcc agtatcacca ggaaaatttc ctagctgttc gttaagcgta
1321 tagtcagttg gtaaccagcc aagctccttg cgttctccta cctgaaagat accccagcca
1381 gatgaatcag aattccatat caaattagtt ttgacagatc cttgtgcatc cttagagata
1441 taagttttag agctaataac ctgtggaact tcagattcac caatagcctg acgaccaggg
1501 tagttttgcg caattccagg gaaaatatct tgcctaatct gaccgatacc ccaataaaga
1561 ggtgtagcat gcctttcaaa accagactgt aaattgaatt tataccaacg gttatcaagc
1621 atcaactgat agtagcgatc catattagtt acctgcgaat catcttgagg gtttccccag
1681 tactcaccat tggtaatacg cactaatcca ggattaaatt gatctcgagg atcgaccgtc
1741 tgctcaccag cttctaatga aagaccggtt ggatcaacag gtaaagtgga cgctggtaca
1801 aatttaagct taacacgtcc aagcttaaaa tatttatatg cagcaaagaa gggtaaaagc
1861 cttctcatcg cttcacgtcc accagcagca accttcacaa cagacactct atctgatcta
1921 gtctgcaagt cgagaaaata agaataggtt tgagaattca ttaaatcacc ttggttacat
1981 cagaagtagt ttttccagct cctctagcca tagttgcaac acgtcctccg gtatggatga
2041 catcatcgat aagagaacca gcagtcctaa aagcacgaga atcatagctt tgcgaactat
2101 atttgacggt tctcccagta ttcttattaa aatccctttg catttgtcta aaatctttgt
2161 aggaatcata tttatacacc atatttccaa gaccgaaggg aattgcatac atccaggttt
2221 gataagccat atcaatacct tctcctgcgg taatatcttc tgcgaccata gccaccgtag
2281 tatctcctac gggaatagtt ataacgtcta tagtatgcca ttaaggtaca cctatgagga
2341 ata
//
