LOCUS NC_075411 7908 bp RNA linear VRL 05-MAY-2023
DEFINITION Calicivirus chicken/V0021/Bayern/2004, complete genome.
ACCESSION NC_075411
VERSION NC_075411.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Calicivirus chicken/V0021/Bayern/2004
ORGANISM Calicivirus chicken/V0021/Bayern/2004
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae.
REFERENCE 1 (bases 1 to 7908)
AUTHORS Wolf,S., Reetz,J. and Otto,P.
TITLE Genetic characterization of a novel calicivirus from a chicken
JOURNAL Arch. Virol. 156 (7), 1143-1150 (2011)
PUBMED 21404111
REFERENCE 2 (bases 1 to 7908)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 7908)
AUTHORS Wolf,S., Reetz,J. and Otto,P.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2010) Institute of Microbiology, Dresden
University of Technology, Zellescher Weg 20b, Dresden 01217,
Germany
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to HQ010042.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..7908
/organism="Calicivirus chicken/V0021/Bayern/2004"
/mol_type="genomic RNA"
/isolate="Bavaria04V0021"
/host="chicken"
/db_xref="taxon:889389"
/country="Germany"
/collection_date="2004"
gene 5..6940
/locus_tag="QKC98_gp1"
/db_xref="GeneID:80527658"
CDS 5..6940
/locus_tag="QKC98_gp1"
/note="contains non-structural proteins 2C
helicase/NTPase, 3C cysteine protease, and RNA-dependent
RNA polymerase, and a major structural capsid protein
(VP1)"
/codon_start=1
/product="polyprotein"
/protein_id="YP_010790303.1"
/db_xref="GeneID:80527658"
/translation="MKMVTLALAPITPIGAFLVIPPLFARRWMVSSMTFGLVAHAPQA
TTTPAPETNPTSEQVLPNPPEPSFWHRLIDGVAPPQEPPLLSAITSLISLLGGLANLT
FTALVEKVRPVALLTILRAHGWRLTIPCLTAVLELYGMVRSTTDLLIDGLSWFIDFIG
RHLPCKMQAGGEEDSDTDLEDLYTRENPSRLSPRVIQLIGAVAALPIALLLGRAACRP
ILRFLGSLSRVNTIPTFVKNVASLVSWGKNHLASQRIRRTIGGFIMVEDEVARNINNS
TAPQLDAYSSTIDQLLEEARERQVSHPGHPLLSALTKHASDLKELQNQLRGKLSLLAK
RDPPAFYLFTGPPGIGKTTLVQHLAARLSPIAPSNFPGHLDHYDTYNPGPVCIWDEMT
NTPPDLMVQHVLGMVNSTPYPLNCDRPENKGMVFNSRVVFATSNLSTPLDPGHPLAGA
FYRRVQIIDCSAPTISNYITETGEMPPSTHYRQDGSHITLKKRPRMAYTPQGDLLTSD
GVARKGRITPTTPDAILTSLRGTVVMEAGRRILLVVDKNWPEALPTSWMFESRGHQVD
VVVDGPETNQEANVLILAVMNANDWPAHRVAGLLKKVNPALWSLAYVAGTPEVVVASK
RISPGDLMDHVKRTWTAPQNFREEQGWHPDWPAYYAKCREAGRLPGYVLLGIDPALAP
DLATHLHQWAARRGIPLPIYDGTKNPCAAIERAETEILTAIVMVKPIDDPDLKVTHFD
PTRPPGLSLSDVIQTENNEALEKFLGHVWAPGTISPHILHRITSACELDVSDSSTGVG
AVMNHFSLASGVRVIWQAWKNAGSTSQFFQTLLTMAARPEPRLTVLHWGDSTYWLYTS
TCVGFAITPRIAPHRLPGCARPRPAGDRSLYGLLSEMLSTFLTALRNAAPLILTLYSW
NQLNSTEMEKKKGKTKHGRGRRHAGGGRGPRLTDEDYDEWQQMREDWREDVTAEQYYQ
AKYGENRDTKTSQRYDAWRRLKDLRAGQNDPRMSRPETRREAGLVSRHHGLSRQDLGF
ATSRAERRLATYDASNPGDDEAPRRLRHHMEGGITSPVVPALSGSLEVGWAVHLGSGR
FILPKHLGATTIAGHPFVVCGLRNVDLLFVDCQALRSIPQVRIGTGHPVKLHGRGYIN
ASKTTATHLLPVGTVQGYSYNLLAGITKQGDCGLPLYDAAGGVVGIHVARNQVVSICL
AYQQLTEAAARPLRSFRGLDVVDSEVPSGPPMTVTRYWVAPGMEFDEQMPYQPGLVGS
NDPRNPAPLVTILTSGLAPYTDPGPDIPPAELALARAQVTAALQALMGVEVSPNLDFA
AAWGSLNKDTSCGPLVPGKKRDYMDEAGNLLPGTLRDHLSTSWGIATTGKALRHIYAL
ALKDELLPRRKIYETPKKRLLWGCDAGVALAAAGVFQPVYERIKSTAAWGPISVGICL
ERPEVFNAFQHRFTGPVSCLDYSGWDSTMHHAVITAAVEILSVFAEDTPLTHSVVSTL
TSPAIGCFMGCEVTVKRGLPSGQPGTSMINSVCHMLYFCMALNISARGACLPPLQNPI
LDCELATYGDDCIYKFPTLYQGAFGNFIQALRTLGLKPTAPDKTSDIALGLRIVYLKR
ELRDAEGNWRDGPVLDLDSIVRQAYWVRGTAHRDPREVATRVHDGRGLQLDLALAALS
QHGPEVFSQNVHPFIRTALASGCPISLTTWEVAHQWWKDFSASLSTAEGDITTLVMSP
KVDYVMEGVTTPPAPRGQAPTGTPQTTQELSLATSGMVVTAPDTGVPVAPQPVAPQAP
TIIEASGGITTLPPDMASMFVQVGRLGWNGTNPTGTMLGTFDLGPALNPFTRLIAQAY
CAWGGGFEFQVMLSGSGAYGGRLLIGIFPPGINPGNQDPTAFPHFYVDARESSPVTFP
VPDLNPARYHSTNGADLTTSVAIFVAAPLLNPFSANNGYSCEITILARPGPDFGFAML
RTPTTTEVTVIRDALGRSTAGWIGCRWATTITSITPFLGARDTRVYNHFTSQGTTAGW
GNGWPYTRIYVNIYNTTTSHPGPPSSGLTAGQFLSVQAAPDSGQAPTVIPGIPPGWTD
LPTSQVTVSQGADPSAGSGAMYVGILATPTNSGPDITEAYSERLFQQNGMISGGATSG
TILPVPNNVSNQTLAFAIGETRTGSSATTAQTIVASCMCWFTATNTSPGDNALTVPGY
NGRAAPYHHTILSFNSHVPTNYPGGGTIGSSQPVPLSTTLAANPSDGWDATRMAVWNL
TGGGYTRQLGMLSDGTMVTGNFTGTVSLTTPHEISFQGFSSITAPLQPPTPNGNDAAF
RFVNW"
misc_feature 953..>1090
/locus_tag="QKC98_gp1"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl38936"
/db_xref="CDD:453896"
misc_feature 1028..1312
/locus_tag="QKC98_gp1"
/note="RNA helicase; Region: RNA_helicase; pfam00910"
/db_xref="CDD:425942"
misc_feature 1037..1060
/locus_tag="QKC98_gp1"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature 1040..1063
/locus_tag="QKC98_gp1"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 3239..3556
/locus_tag="QKC98_gp1"
/note="Southampton virus-type processing peptidase;
Region: Peptidase_C37; cl28040"
/db_xref="CDD:332861"
misc_feature 4124..5053
/locus_tag="QKC98_gp1"
/note="conserved catalytic core domain of RNA-dependent
RNA polymerase (RdRp) from the positive-sense
single-stranded RNA [(+)ssRNA] viruses and closely related
viruses; Region: ps-ssRNAv_RdRp-like; cl40470"
/db_xref="CDD:454764"
misc_feature order(4343..4351,4367..4402)
/locus_tag="QKC98_gp1"
/note="conserved polymerase motif A; other site"
/db_xref="CDD:438017"
misc_feature order(4541..4591,4595..4612)
/locus_tag="QKC98_gp1"
/note="conserved polymerase motif B; other site"
/db_xref="CDD:438017"
misc_feature order(4673..4678,4682..4711)
/locus_tag="QKC98_gp1"
/note="conserved polymerase motif C; other site"
/db_xref="CDD:438017"
misc_feature 5285..6052
/locus_tag="QKC98_gp1"
/note="Calicivirus coat protein; Region: Calici_coat;
pfam00915"
/db_xref="CDD:366366"
gene 6940..7803
/locus_tag="QKC98_gp2"
/db_xref="GeneID:80527657"
CDS 6940..7803
/locus_tag="QKC98_gp2"
/note="VP2"
/codon_start=1
/product="putative minor capsid protein"
/protein_id="YP_010790304.1"
/db_xref="GeneID:80527657"
/translation="MAAAGFAAVAGGASNLISSLGSTATNAASLAIQKELGEKSLAIQ
QQGQMLSAVSPYISADAYMKTIGAAIEARYDAPTAMGVEKSYAMMRSLNPNWGYTLNG
NHTMPEVRTPTVGSVSAPVLSPLNLSTSFQSTQSYTINNGQAIDRQSNWGSVRASSWV
NNPSNYSRDTTMSGTHGSSIGTVSPFSSVRSSSSSNSSFSVLNWEGYVYNSWPGRTIS
TQTDPHHTPVADAGVQATVSSADASVGTRPRTYRFNSSRSSWNPNAFRNPQMAIDLNT
PHGGPPARYPR"
ORIGIN
1 gtagatgaag atggtgacct tagctttggc tccaatcaca cctattgggg cctttttggt
61 gatcccgcca ctgttcgcaa gaaggtggat ggtctcttcc atgacattcg gactggtagc
121 tcacgccccc caagcaacta caacgcccgc tcctgagact aaccccacct cagaacaggt
181 cctccctaac ccgcctgagc ctagcttctg gcaccgactg attgacgggg tcgcacctcc
241 ccaggaaccc ccacttctct ctgccatcac tagccttatc tcactcttag gtggtctagc
301 caatctgacc ttcactgccc ttgttgaaaa ggtcaggcct gtagcccttc tcactatcct
361 tcgggcacat ggctggcgct tgaccatacc ctgtctcacc gctgttcttg aactctatgg
421 tatggtgcgc tcaaccacag acctcctgat cgacggactt agctggttca tagactttat
481 tggtaggcac ctcccctgta aaatgcaagc tggcggggag gaggactcag acactgacct
541 ggaggacctc tataccaggg agaacccctc ccgactctcc cccagggtca tacagctcat
601 aggggctgtt gctgcactac ccattgcact cctcttaggt cgtgcggcct gtcggcccat
661 cctccgcttt cttggctcgc tctcacgcgt gaacaccatt ccaaccttcg tgaagaacgt
721 agctagccta gttagttggg ggaagaatca tcttgcctcc caacggatta ggaggactat
781 tggcggtttc attatggttg aggatgaagt tgcaagaaac attaacaact caactgctcc
841 acaacttgat gcctactcca gtactattga ccaactcctg gaggaggctc gtgagcgcca
901 agtctcccat ccggggcacc ctttgctctc agccctgaca aagcatgcct cagatcttaa
961 ggagctccaa aaccaactcc gggggaaact ctccctactt gccaagcgtg atccaccagc
1021 cttctacctt tttactggcc cacctggtat tgggaaaacc acactggtgc aacatctggc
1081 agctcgtctc tcaccaattg ccccctccaa cttccctggg catttagacc actatgacac
1141 ctacaaccca gggccagtct gtatttggga tgagatgaca aatacaccac ctgatctaat
1201 ggtccagcat gttctgggga tggttaactc aacaccctac ccccttaact gtgaccgacc
1261 agagaacaag gggatggtct tcaactcacg agttgtcttt gcaactagca atctctccac
1321 ccccttggat ccggggcatc ccttagctgg tgccttctat cggcgtgtcc agattattga
1381 ctgctctgcc cccaccatct ctaactatat tactgagact ggggaaatgc caccctcaac
1441 acactatcgc caggacggta gccacatcac acttaagaaa cgaccccgta tggcctatac
1501 acctcagggt gaccttctaa catcagatgg ggttgcccgt aagggacgca ttactcccac
1561 aacacctgat gcaattctta cctccctccg tggcactgtg gttatggaag cgggcaggcg
1621 tatcctcttg gttgtggata aaaattggcc agaggcactt ccaactagtt ggatgtttga
1681 atcccgtggc caccaagtgg atgtcgtcgt ggatggacct gagaccaacc aggaggctaa
1741 tgtcttgatc ctagcagtca tgaatgccaa tgactggcca gcccatcgtg tggccggtct
1801 tctaaagaaa gttaatcccg cgctctggtc tctggcctat gtagctggca cacctgaagt
1861 tgttgttgcc tcaaagcgga taagcccagg tgatctgatg gaccatgtca aacgcacttg
1921 gactgcccct cagaatttcc gtgaggagca gggctggcat cctgactggc cggcctacta
1981 tgccaagtgc cgtgaggcgg gacgcttacc tggctacgtt ctcctgggga tagaccccgc
2041 tttggcacca gatctcgcaa ctcacctcca tcagtgggct gccaggcgag gtatcccgct
2101 tcccatctat gacgggacta agaacccttg tgcggcaatt gagcgtgctg agacagagat
2161 cctcactgca attgtgatgg ttaaacccat tgatgacccg gaccttaagg tcacccactt
2221 tgacccaact cggcctcccg gtttgtccct ctctgatgtc atccaaactg agaacaacga
2281 ggccctggag aagttcttgg gtcatgtctg ggcccctggg acaataagtc cccatatcct
2341 ccacaggata acttcggcct gtgaattaga tgtgagtgac tcgagtactg gagttggagc
2401 tgttatgaat cactttagcc tggctagtgg tgtgcgcgtc atctggcaag cctggaagaa
2461 tgctggctcc acctcgcaat tcttccagac cctcttgact atggctgccc gtcctgaacc
2521 gagactaact gttcttcact ggggtgactc cacctactgg ctctacacct ccacctgtgt
2581 tggctttgca atcacccctc gtattgcccc ccaccggcta ccaggctgtg cccggcctcg
2641 acctgccggg gatcggtcac tttatggcct cctcagtgag atgttgagca cctttcttac
2701 cgcacttagg aatgcagccc ccctcatcct cacactctac tcctggaatc agttaaactc
2761 cactgagatg gagaaaaaga aggggaagac aaaacacggc cgtgggcgac gtcatgctgg
2821 tggtggccgt ggtccccgac tgacagatga agactatgat gagtggcaac aaatgcgaga
2881 agactggcgg gaggatgtca ctgctgaaca gtactaccag gccaagtacg gtgagaatcg
2941 tgacacaaag acctcacagc gctatgacgc ctggcggcgt cttaaagatc ttcgcgctgg
3001 gcagaatgac cctcgcatgt cccggcctga aacccgtcgt gaagctggtc ttgtctcacg
3061 acaccacgga ctctcaagac aggacttggg ctttgccacc tcacgtgctg aacggcgcct
3121 tgccacctat gatgcctcca acccaggtga tgatgaggct ccacgccggc ttcgacatca
3181 tatggagggt gggataacct ctccagtagt tcctgccctc tccggctccc ttgaggttgg
3241 ctgggcagtc caccttggct ctggtcgctt cattcttcct aaacaccttg gcgcaacaac
3301 gattgctggt catccctttg ttgtttgtgg ccttcggaat gtcgatctgc tctttgtgga
3361 ctgccaagca ttgcgctcaa taccccaggt taggattggt acaggtcacc cagttaagct
3421 gcatggtcgg gggtatatca atgcctcgaa aaccactgcg acacacctcc tccctgttgg
3481 cacagtccaa ggctactcct acaacctcct tgctggtatc accaagcaag gtgactgtgg
3541 tctgcccctc tatgatgcag ctggtggtgt tgtgggcatt catgttgcga gaaatcaggt
3601 tgtctcaatc tgccttgcct atcagcaact tactgaggca gctgccaggc ccctacgctc
3661 ttttcgtgga cttgatgttg ttgactcaga agtccctagt ggtcccccaa tgactgtgac
3721 ccgctactgg gtggcacctg gaatggaatt tgacgaacag atgccctatc aaccaggctt
3781 ggttggttcc aatgatccta ggaacccagc accacttgta accatcctca cctctgggct
3841 agcaccctat acagatccag ggccagacat tccaccagca gagcttgccc tggcccgtgc
3901 acaggtcact gccgccctcc aggcacttat gggtgttgaa gtttccccca acttagactt
3961 tgctgcagcc tggggctcac tcaacaagga cacctcttgt gggcccttgg taccgggtaa
4021 gaagcgtgac tacatggatg aggccggtaa cctcctccca ggtactctcc gtgatcacct
4081 ctcaacctct tgggggattg ccacaactgg aaaagcccta cgccacattt atgccctggc
4141 actgaaggat gaactcttgc caagaaggaa gatctatgaa acccccaaga agagactcct
4201 ctgggggtgt gatgctggtg ttgcacttgc tgctgcaggg gtcttccagc cagtctatga
4261 gcgcattaaa tcaactgctg cctggggccc aatctcagtt ggcatctgtc tggagcgacc
4321 agaggtcttt aatgcattcc aacatcgctt cactggtcca gtctcctgcc ttgactactc
4381 tggctgggac tcaactatgc accatgccgt aatcactgcg gctgttgaga tcctctccgt
4441 ctttgcggaa gacactcccc tgacgcactc cgtggtctct accttaacct caccagcaat
4501 tggctgcttt atgggctgtg aggttacggt caagcgtggt ctcccctctg ggcaacctgg
4561 gacctcgatg atcaactcag tctgccacat gctctacttc tgcatggccc ttaacatctc
4621 ggccagaggg gcctgtttac cgccactcca gaatcccatc cttgactgtg agcttgcaac
4681 ttatggtgat gactgtatct ataagttccc caccctctat cagggggcct ttggaaactt
4741 tatacaggca ctccgcacat taggcctaaa acccactgct ccggacaaga cctcggacat
4801 agcacttggc cttcggattg tctatcttaa gcgtgaacta cgcgacgctg aggggaactg
4861 gagggatgga cctgtcctgg acctagactc cattgttaga caagcctact gggtccgtgg
4921 aactgcacat agggacccaa gagaagtcgc caccagggtc cacgatgggc gtggacttca
4981 gcttgacttg gccttggccg ccctctcaca gcatggccca gaagtcttct ctcagaatgt
5041 gcaccctttc atacgcacag ctctagcctc tggctgcccg atctccctta ccacctggga
5101 ggtcgcacat cagtggtgga aggatttctc cgcaagcctt agcactgcgg aaggagacat
5161 aacaacacta gtcatgtcac cgaaggttga ttatgttatg gagggtgtca ccacaccccc
5221 ggcccctcgg ggccaggcgc ctacgggcac cccacaaaca acacaagaac tttcgctcgc
5281 cacctctggc atggtggtca ccgcccctga cactggggtg ccggtggccc cccagccagt
5341 ggccccacag gctccaacca tcattgaagc ctcaggtggg atcaccacct taccccctga
5401 tatggcgagc atgtttgtac aggttgggcg tcttggctgg aacggtacca atccaactgg
5461 tactatgctt ggcacctttg acctcggccc tgctctgaac cccttcacgc gactcattgc
5521 tcaagcctac tgtgcctggg gtggtggctt tgaatttcag gtcatgctct cggggtcagg
5581 ggcctatggt ggtcggttgt taataggaat ctttccacca gggattaatc caggcaatca
5641 ggacccaact gccttcccgc atttctatgt ggatgcacgg gaatcttcac cagtcacctt
5701 tcctgtccct gaccttaatc ctgctcgcta ccactcaaca aatggtgctg acttaacaac
5761 ctcagtggcc atcttcgttg ctgcaccact cttaaacccc ttttcagcga ataatggcta
5821 ctcctgcgag atcaccatcc ttgctcgccc tggccctgac tttggctttg caatgctgcg
5881 taccccaaca actacagagg tcacggtcat tcgggatgca cttggacgca gcacggccgg
5941 ctggattggt tgccgttggg ccaccacaat tacctccatc acacccttcc ttggtgcaag
6001 ggatactcgg gtctataacc acttcacttc ccaaggtaca actgctggct ggggcaatgg
6061 ctggccctac actcggatct atgtcaacat ctataataca acaaccagcc atcccggccc
6121 accctccagt ggtcttactg cggggcagtt tctctcagtg caggctgccc cagactcagg
6181 gcaagcccca actgtcatac ctgggatccc ccctgggtgg actgatttac ccacttccca
6241 agtcacagtt agccaaggtg cagacccctc agcaggctct ggtgccatgt atgtcggtat
6301 tcttgcaacc cccaccaaca gtggtccaga cataactgag gcttattctg aaaggctctt
6361 ccaacagaat ggtatgatct caggtggtgc tacatctggt accatcttgc ctgtccccaa
6421 taatgtctct aatcagaccc ttgcttttgc cattggggaa acaagaactg ggagttcagc
6481 caccactgca cagaccatcg tagcatcctg catgtgctgg ttcactgcta ctaacacctc
6541 acctggtgat aatgccctca ctgtcccggg ctataatggc cgagcggctc cctaccacca
6601 cacaatcctt tcattcaact cgcacgtgcc aacaaactat cctggtggtg gcactattgg
6661 ctcctcacag ccagtacccc tttcaaccac gcttgccgcc aacccctctg acggctggga
6721 cgctactagg atggctgtct ggaatctcac tggtggtggc tacacccggc agttaggcat
6781 gctctctgat gggactatgg tgactgggaa ctttacaggc acggttagcc tgactacacc
6841 gcatgagatc agctttcaag gcttctccag tatcactgcc cccttgcaac ccccaacgcc
6901 gaatgggaac gatgcggcgt tccgatttgt taattggtaa tggctgcagc ggggtttgct
6961 gccgttgctg ggggggccag caatctgatc tcatctctgg gttcgactgc aacaaatgct
7021 gcttcccttg ccattcagaa ggaattgggt gaaaagtctc tggcaattca acaacagggc
7081 cagatgcttt cagcagtctc tccctacatc tcagctgatg cctatatgaa aactattggt
7141 gcagccattg aggcgcgcta tgatgcccca acggcaatgg gtgttgaaaa atcttatgcc
7201 atgatgcgct cccttaatcc caactggggc tacaccttga atggcaacca cacaatgcca
7261 gaggttagaa caccaactgt aggctcagtg agtgcaccag ttctctcacc cctgaatctt
7321 tccaccagct ttcagagtac tcagtcatac actatcaata atggtcaggc tattgatcgc
7381 cagtccaact ggggctcagt gcgtgcaagc tcttgggtta ataatccctc gaactactcg
7441 agggacacaa caatgtctgg cacacatggt tcatccattg ggacagtgag tccgttctcc
7501 tcagttcggt cttctagctc gtctaacagt agcttctctg tcctcaactg ggaaggctat
7561 gtctataaca gctggccagg tcgcaccatc tcaacccaaa ctgacccaca ccatacccca
7621 gtggctgacg ctggtgtgca ggccacagtc agtagtgctg atgcgtctgt tggtacgcgt
7681 cctaggacgt acagattcaa ctccagcagg agcagctgga atccaaatgc cttccggaac
7741 ccccagatgg caattgactt gaacaccccc catgggggcc cccctgcaag atatccccgt
7801 tgatatcccc taatcacaac agtgaaaatt tctttgctga tttctgttta gttttaggtt
7861 gtaagtttac tagataatct tagacttagc ttagatagtg gttctaac
//
