LOCUS NC_075989 3661 bp DNA linear VRL 06-MAY-2023
DEFINITION Chicken chapparvovirus HK isolate ParvoQ45/2013 NS1 (NS1) gene,
complete cds.
ACCESSION NC_075989
VERSION NC_075989.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE chicken chapparvovirus HK
ORGANISM chicken chapparvovirus HK
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Quintoviricetes; Piccovirales; Parvoviridae; Hamaparvovirinae;
Chaphamaparvovirus; Chaphamaparvovirus galliform3.
REFERENCE 1 (bases 1 to 3661)
AUTHORS Kim,H., Choi,J., Lee,H. and Kwon,Y.
TITLE Viral metagenomic analysis of the feces of chickens with
Runting-Stunting Syndrome
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3661)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3661)
AUTHORS Kim,H., Choi,J., Lee,H. and Kwon,Y.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2014) Avian Disease Division, Animal and Plant
Quarantine Agency, 175 Anyangro, Manangu, Anyangsi, Gyeonggido
430-757, Republic of Korea
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KM254174.
##Assembly-Data-START##
Assembly Method :: VectorNTI v. 10
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3661
/organism="chicken chapparvovirus HK"
/mol_type="genomic DNA"
/isolate="ParvoQ45/2013"
/host="chicken"
/db_xref="taxon:2849623"
/country="South Korea"
/collection_date="Aug-2013"
gene 691..2712
/gene="NS1"
/locus_tag="QKJ55_gp1"
/db_xref="GeneID:80533790"
CDS 691..2712
/gene="NS1"
/locus_tag="QKJ55_gp1"
/codon_start=1
/product="NS1"
/protein_id="YP_010796335.1"
/db_xref="GeneID:80533790"
/translation="MSAQVQCGRKSVRRLLWRGIRGECCGHQLECQQETEGEIVEEKD
FVARVMPIIEVEENLMNMRTYLGGVVIIADEDGQIIENPVLYGNLLNNMACNDDWIAI
SEYNKNNVFHVHTMCKTGVRSDSFRRTANTVWETIKKDPTIIEHYGQCSLDMMKCQKA
HRPSSLLQYMCKKPIWILSNTEKLLQMSYDIELWDLGSRFKSPANDQTVSVDNANPMI
QELLECIMQHNCKTFEDVVKKGADVVLKYLHRPGFSSVVQNCLVYAKCVGHTWSLSNY
GKVVPDPSGIHCILITQGINPDDFDPIFWQWITKKHLKRNTIHVFGPSNTGKSCFLTG
LGKCCPGGEIVNGNNFNFEGMIDVYWAKWEEPLCAPELAEKFKQIAEGMETFIPVKFK
RPYMLPRTPVWITTNSMIWDWCPNQEGPFRNRMWFFEFTYDMSNGLFVPRISQSSCKC
RYCSQCGSGPSTSGLTTAKRVQRSKQSVQKQLDARPGTSKSAMGTGSMCRTGGSIAKS
DEAGSSGGESSSNTTIGGSTSTTVSRIDGSDTQHGSSNTNERICSSDTGSTESVEPDS
SRGCDGYDSRKLSGGCRTSGGDDVRRDSRTHVLLHNVVSVGSARHKKRKMEAGLQTDQ
QSVGGQLDTKIKIPDKDEWSKYLAYIFHRFEKQSSTDLTAYEDLSSDSE"
misc_feature <1555..2010
/gene="NS1"
/locus_tag="QKJ55_gp1"
/note="Parvovirus non-structural protein NS1; Region:
Parvo_NS1; cl24009"
/db_xref="CDD:451657"
ORIGIN
1 tctggaaaag caaatgtagg tataagtaac gataaagggg gcggggcagg ggggtaccgc
61 ccataatatt gatgtgtgtg tgtggatgtg gtgtaagaca cagagactat aaatatgagc
121 aagaagtaca atcagtggta cgctatgcgt aaaaatttac aggataaagg taaatggaaa
181 ggagcagcgc ataaagttcc tgctagagaa gaaggagaac ctgaaccgaa gaatcctaaa
241 ttcggtgatc ctctggaaaa tcaggaagca gctgtacaag aaggtgctac acctgatcca
301 gaagaaggaa ccagtaaaac tgcacaaggt atgttattaa tatgacatat tttgcagatt
361 cattatggca ggattcggtg catcaaatgg attcacattg ctggtatggg tcgatcccga
421 ctcctggaga cttacaaata tggaagatca gcaacgctat aacaagaaga aagagatttt
481 ggaagacgtt attaccttat tatgtggaag atgggggatg gagggtacct ttatggagca
541 tagcggggat ttatacgcat tcttctgttg taccaaattt gtggttagca cagcgacctt
601 ggttagggct gtaggagatt taggttcctg tgttaaattt catagaggtg gttctgctga
661 taaaccagaa tttcttatta gatatcgtga atgtctgcgc aagtacaatg tggcagaaaa
721 agtgtccgac gccttctctg gaggggaata cgcggagaat gctgtgggca ccagttggaa
781 tgccaacaag agacagaggg cgaaatagta gaagaaaaag atttcgttgc cagagtcatg
841 ccaatcatcg aagtggaaga aaatttaatg aatatgcgga catatctcgg tggtgttgtt
901 attatagcag atgaagatgg acaaatcatt gaaaatcctg tactgtatgg aaatttgtta
961 aataacatgg catgtaatga tgattggatt gcaattagtg aatacaataa aaacaatgtg
1021 tttcatgttc acacaatgtg taaaactggt gttcgatcag attcatttcg aagaactgct
1081 aatactgttt gggaaacaat taaaaaagat ccaacaatca ttgaacatta tggacaatgt
1141 tcattggaca tgatgaagtg tcaaaaagct catagacctt catcattgct tcaatatatg
1201 tgtaaaaaac caatatggat tttatcgaac acagaaaaat tactgcaaat gtcatatgac
1261 attgaacttt gggatttggg ctcgagattc aaaagtccag caaatgatca aacagtgtca
1321 gtagataacg ctaatccaat gatacaagag cttttagaat gtattatgca acacaattgt
1381 aaaacatttg aagatgtagt taaaaaaggg gcggacgttg ttctcaaata tttacataga
1441 ccaggattct ctagtgtagt acaaaattgc ttggtttacg cgaagtgcgt tggtcataca
1501 tggtcgttgt cgaattatgg aaaagtggtt cctgatccta gtggtatcca ctgcattctc
1561 attactcaag gaattaaccc agatgatttt gatcctattt tttggcaatg gatcacaaag
1621 aagcatctca aacgaaacac aatccatgtc tttggaccgt caaacacggg taaatcgtgt
1681 tttctcacag gactaggtaa gtgctgtcca ggcggagaaa ttgttaatgg caataatttt
1741 aattttgaag gaatgattga tgtttattgg gcaaaatggg aagaaccatt atgtgctcca
1801 gaattagcag agaaatttaa acaaattgca gaaggcatgg aaacatttat tcctgtgaaa
1861 ttcaaacgac catatatgtt accacgcaca cctgtctgga ttactactaa tagtatgatt
1921 tgggattggt gtccgaatca agaaggacca ttcagaaatc gtatgtggtt ttttgaattc
1981 acatatgaca tgtctaatgg tctttttgtt cctagaatct ctcaatcaag ctgcaaatgc
2041 cgctattgca gccaatgtgg gagcgggccg tctacttctg gcctcacaac agctaagaga
2101 gtgcagagaa gcaaacaatc cgtacaaaaa cagctggatg ccaggcctgg caccagcaaa
2161 tctgcaatgg gcaccggatc catgtgcaga acaggaggaa gcattgcaaa atctgatgaa
2221 gcagggagca gcggagggga atcaagtagc aacacaacaa ttggggggag caccagcacc
2281 acagttagca gaatcgacgg atccgacacc caacacggat ccagcaatac caatgaacga
2341 atatgtagtt ccgacacagg gagcacagaa tcagtggagc ccgatagttc cagaggatgt
2401 gatggatatg attctagaaa actatccgga ggatgcagaa cctccggagg agatgatgtt
2461 agacgagatt ctagaacaca tgttttatta cataatgtgg tgtccgtggg gtcagccagg
2521 cacaaaaaac gcaaaatgga agctggttta caaaccgatc aacagtcagt gggtgggcaa
2581 ttggacacca agataaaaat tcctgataaa gatgaatggt ctaaatatct tgcttatatc
2641 tttcatagat ttgaaaagca atcatctact gatttaactg catacgaaga tctatcatct
2701 gattcagaat gactgaaact attgctttcg ataatgtcta tatgacatac atagacaata
2761 atccttatca ctatcctagc atcgatgtct taaatatgat tcaaggtgat acatttgaag
2821 cactagaagt taatactgga tggcatttga ttccgaactt tttatggaga catgtaatta
2881 ttccaagaca atgggatgct ctcattcgta attgtgaagc gtatactgta aaatcaataa
2941 aaggacaaat tttcaatcca ataccaatca cacataatat ctctttacaa cgcacgagct
3001 tgttttctgc attcaacaat tgcacatatg ctatgacata cactgatgac aaatatgaaa
3061 ctgattggtt tgcctggaat tcactcttac cagaaaaaca attacattta tcacaacgtg
3121 aaggacttgt atggacagga acacaacaaa atgcacaaaa tcatgttcct aaacgctacc
3181 aatggccaat atattcatgg aacaaaccaa tatgcagaac aatatttcca tctgtatgga
3241 gtcaaggaaa agatggatct gcaggtgtat atgacacaca atataccaac atcacacaat
3301 cagcaacaac aactataaaa gaagcaattc ctaatggagt cttctgggat ccattaaatt
3361 gctctaatga aattggtgaa ttgcgtgcag gaaaaaatag tattgaattt agttggcatg
3421 ttgcaagttg cgatgaaggt aaatttttca atactgattg gatcgcagca tttgcaacat
3481 ggacagtcga tggtccatat caatcagaag gtcgaccatg gacattatgg cgaacaaatg
3541 atatggatcc aggaaatttc agtacattcg gacttgcaat gtcgcaaggc gattcaacat
3601 ctggaaatca accacaaaat ttccaagact acactgtacc aaacatgttc aacatgccaa
3661 t
//
