LOCUS NC_076004 4432 bp DNA linear VRL 05-MAY-2023
DEFINITION Chicken chapparvovirus 2 strain RS/BR/15/2S NS1 (QKJ70_gp1) and
capsid protein (QKJ70_gp2) genes, complete cds.
ACCESSION NC_076004
VERSION NC_076004.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken chapparvovirus 2
ORGANISM Chicken chapparvovirus 2
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Quintoviricetes; Piccovirales; Parvoviridae; Hamaparvovirinae;
Chaphamaparvovirus; Chaphamaparvovirus galliform2.
REFERENCE 1 (bases 1 to 4432)
AUTHORS Lima,D.A. and Roehe,P.M.
TITLE A case-control study in search for viruses in malabsorption
syndrome affected and healthy chickens
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4432)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4432)
AUTHORS Lima,D.A. and Roehe,P.M.
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2018) Departamento de Microbiologia, Imunologia e
Parasitologia, Universidade Federal do Rio Grande do Sul, Sarmento
Leite, 500, Porto Alegre, Rio Grande do Sul 90050-170, Brazil
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MG846442.
##Assembly-Data-START##
Assembly Method :: MetaSPAdes v. 3.10.1; Geneious v. 9.1.8
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4432
/organism="Chicken chapparvovirus 2"
/mol_type="genomic DNA"
/strain="RS/BR/15/2S"
/isolation_source="feces"
/host="Gallus gallus"
/db_xref="taxon:2109367"
/country="Brazil"
/collection_date="2015"
/collected_by="Diane Lima"
gene 582..2603
/locus_tag="QKJ70_gp1"
/db_xref="GeneID:80533854"
CDS 582..2603
/locus_tag="QKJ70_gp1"
/codon_start=1
/product="NS1"
/protein_id="YP_010796383.1"
/db_xref="GeneID:80533854"
/translation="MSQQVSCSRESVRRLFWRGIRGEPVGAQLECQQETTGEMIQEMD
FVARVMPVIQVEQNLMNMRTYLGGVKQISDADGQIVENPVLYGNLLHNMACNEDWIAI
AEYNKDGIFHVHTLCKTGVRSDSYRRTANSVWEQIKKDPIIIEHYGNCSLDMLKCQKA
HRATSLLEYMCKAPVWIMSNTEKLLQMTYDIEVWNLGERFKSSANDQTASIDNANPMI
QELLECIMQHNCKTFEDVVKKGPEVTVKYLHRPGFSSIVQNCFIYAKCVGHTWSLQQY
GKVVPDPSGIHCILLHQGIAPTHFDYIFWQWITKRHLKRNCIHLYGPSNTGKSCFLSG
LGKCCPGGEIVNGNSFQFEGLIDVYWGRWEEPLCPPEMAEKFKQVAEGMETAIPVKFK
RPYMLPRTPIFITTNSMIWDWCPNQKGPFKNRMWFFEFLHDMSDGIFHPRVTESGCEC
RYCGQCRSGPSTSGIPTTSGVQRDKQSISKQLVSRSSSEQPAMGTRSMCEGAGSSRQS
NETECSGGESSSNTAAGGSTCTTISDSSGSCSEHGSSNTNERVCDSTTRSTKQLESDS
ARGCDGDDIRKLSGGSRSSGRHDVRSNIRRHVQVHDVVSMGGTREKKRKMEVHLQTSE
QQLGGQLDTKMKIPGKDEWSNYLAYIYHRYEKASVPDLSAYEDLHSDSE"
misc_feature <1446..1892
/locus_tag="QKJ70_gp1"
/note="Parvovirus non-structural protein NS1; Region:
Parvo_NS1; cl24009"
/db_xref="CDD:451657"
misc_feature 2079..2357
/locus_tag="QKJ70_gp1"
/note="Serine-rich region of AP3B1, clathrin-adaptor
complex; Region: SEEEED; pfam14797"
/db_xref="CDD:434218"
gene 2600..4273
/locus_tag="QKJ70_gp2"
/db_xref="GeneID:80533853"
CDS 2600..4273
/locus_tag="QKJ70_gp2"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010796384.1"
/db_xref="GeneID:80533853"
/translation="MTETIKFQNVYMTYIDNNPYQYPSIEVANMIQGTIYDAIEVNTG
WHIIPNFLWRQCIIPRQWDSLVRNCEAYCVKGIKGTIFNPIPITHNISLQRTSLFSAF
NNCTYAMTYTDDKYETDWFPWNTLERKKQLHLSQREGLVWTGTQTDAQHHTPTRYQWP
IYSWRKPYCRNLFDDNWSQGKSGQAGVYDTDATTSLADSHQAIPNGVFWDPFNCADEI
GELRAGKNSIEFSWAPADCDANKFFNLDWLAAYSTWTVDGPFQGEGRPWTLYKTIDMD
PGNFATYGLAMSQSQSNTSSQPKKYQDYTVPNMFNMPIMPTTQFWIEIKNSIVDWYGE
SSQQQSGTMTWFKKPDKYWSGTEYEACTYPPQQWFCKGIPIYDAGNNPIKTTTQVSFR
IEITLEGRKRRSAYFAPTYGPTSGDQLYYQHNSKGIFQPACIRYRTGGRRRAWQNMNT
PQAFGSSTENKNNIDRYPRQDCYQWKYDATNVGEIQYNQHHRPVGIGDDTSANHPTRT
VKNIEKIRVTWSRDTDSTEIHMDDEEEQSQPKPEPRKRSHDIMKLMHLK"
ORIGIN
1 ctagggtata agtatgagta agtacagggg gtggtatgcc atgaaaaagc gtttagaagc
61 tcaaggcaag tggaaagggg cttcacacag agttccagca caagaagaag gtgaaactgc
121 tgcaaagcaa ccgaaattga ctgaaaatca agaagaagca attggtgaag caggaggttc
181 gccatcagat cctgaagaag gtaccagtca taatgcacaa ggtatgtcat tattttctta
241 tatttcagag tatctatggc gggctttgga tcttcaagcg gattcacatt gttggtatgg
301 ctcgataccg acacctggag atttcaaaat atggctgaaa agcaacgcga tgataaggag
361 agagaaatcc tcgaagatgt ctgtacctta ctatgtgggc gatggggtat ggagagtacc
421 actttggaaa atagcgggaa agtatacgca ttcttctcct gtcccaaatt tgtggttagt
481 tcagcgacac ttattagggc tttaggtgat ttaagtgatt gtgttaaatt tcatagggga
541 ggttctgctg ataaacctga atttctcatt cgatatcaac aatgtctcaa caagtatcat
601 gttcccgaga aagtgtccga cgccttttct ggaggggaat acgcggagaa ccagttgggg
661 cacaactgga atgccaacaa gagacaacgg gcgaaatgat acaagaaatg gactttgttg
721 ctcgggttat gcctgttatt caagtagaac aaaatttgat gaatatgcgt acatatttag
781 gtggtgttaa gcaaatttct gatgctgatg gacaaattgt tgaaaatcca gttctttatg
841 gaaatttact gcataatatg gcttgtaatg aagattggat tgctattgct gaatacaata
901 aagatggaat ttttcatgtt catacattat gcaaaactgg tgttcgttct gattcttacc
961 gacggactgc caatagtgtt tgggaacaaa taaaaaaaga tccaattatc attgaacact
1021 atggcaattg ctcattagac atgttaaaat gtcaaaaagc acatcgtgca acatctttgt
1081 tggaatacat gtgcaaagca ccagtttgga taatgtcgaa tacagaaaaa ttacttcaga
1141 tgacatatga cattgaagtt tggaacttag gtgaaagatt caaaagttct gctaatgatc
1201 aaacagcatc gatcgacaac gctaatccaa tgatacaaga acttttagaa tgtattatgc
1261 aacacaattg taaaacattt gaagatgtag ttaaaaaggg gccggaggtt actgttaaat
1321 atttacatag accaggattc tctagtatag tacaaaattg tttcatttac gcgaagtgtg
1381 ttggtcatac atggtcgttg caacagtatg gaaaagtggt acctgatcct agtggtatcc
1441 actgcattct cttgcatcaa ggaattgctc caactcactt tgattatata ttttggcaat
1501 ggattacaaa gaggcacctc aaacgcaact gcatccactt gtatggacca agtaacacag
1561 gcaaatcctg ctttctctcg ggactaggta agtgctgtcc tggaggagaa atcgttaacg
1621 gtaattcatt tcaatttgaa ggtcttattg atgtatattg gggacgttgg gaagaacctt
1681 tatgtccacc agaaatggca gaaaaattca aacaagttgc agaaggcatg gaaacagcaa
1741 ttcctgtaaa attcaaacga ccatatatgt taccaagaac accaatcttt atcactacaa
1801 atagtatgat atgggattgg tgtccaaatc aaaaaggacc atttaaaaat cgaatgtggt
1861 tttttgaatt tttacatgat atgtctgatg gtatttttca tcctagagtt actgaatcag
1921 gctgcgaatg ccgctattgc ggacaatgta ggagcgggcc gtctacttct ggcatcccaa
1981 caacttcagg agtgcagaga gacaaacaat ccatatcgaa acagttggtt tccaggtcta
2041 gctccgaaca gcctgcaatg ggcaccagat ccatgtgcga aggagcagga agcagtagac
2101 aatctaatga aacagagtgc agcggagggg aatcaagtag caacacagca gctgggggca
2161 gcacctgcac cacaattagc gatagcagtg gatcctgttc cgaacacgga tccagcaata
2221 ccaatgaacg agtatgtgac tccacaacca ggagcacaaa acaactggag tccgatagtg
2281 ccagaggatg tgatggagat gatattagaa aattatccgg aggatcaaga tcctccggaa
2341 gacatgatgt tagatcaaat attagacggc atgtacaagt acatgatgtg gtgtccatgg
2401 ggggaacccg ggaaaaaaaa cgcaaaatgg aagttcattt acaaacctct gaacagcagc
2461 tgggtgggca attggacacc aaaatgaaaa ttcctggaaa agatgaatgg tctaattatc
2521 tcgcttacat ttatcacaga tacgaaaaag cttctgttcc tgatttatct gcatacgaag
2581 atctacattc agattcagaa tgactgaaac aataaaattt caaaatgtct acatgacata
2641 catagacaat aatccttatc aatatccaag cattgaagtt gctaatatga ttcaggggac
2701 tatatatgat gcaattgaag ttaatacggg atggcatata attccaaact ttttatggcg
2761 acaatgtata attccacgtc aatgggactc acttgtacgt aattgtgaag catattgtgt
2821 taaaggaata aaaggcacca tttttaatcc tattccgatc acacataata tctcattgca
2881 acgaacaagc ttgttttctg ctttcaacaa ttgcacgtat gcaatgacat acacagatga
2941 caaatatgaa actgactggt ttccatggaa cacactagag agaaaaaaac aactacattt
3001 gtcacaacgt gaaggattag tttggactgg cacacaaact gatgcacagc atcatacacc
3061 aacacgttat caatggccaa tttactcatg gcgaaaacca tactgtagaa acttatttga
3121 tgataattgg agtcaaggaa aaagcggaca agcaggtgtg tatgataccg atgcaacaac
3181 atcattagca gattcacacc aagcaatacc gaatggtgta ttttgggatc cattcaattg
3241 tgcagatgaa attggtgaat tgcgagctgg aaaaaatagt attgaatttt catgggctcc
3301 tgcagattgc gatgcaaata aatttttcaa tttagattgg ttagctgcat attctacatg
3361 gactgttgac ggaccatttc aaggtgaagg aagaccatgg acattataca aaacaatcga
3421 catggatcca ggtaattttg caacatacgg attagcgatg tcacaaagtc agtcaaatac
3481 aagctcacaa ccaaaaaaat atcaggatta tacagtacca aatatgttta acatgcctat
3541 catgcctaca acacaattct ggattgaaat aaaaaattcc atcgttgatt ggtatggaga
3601 aagctcacaa caacaatctg gcactatgac atggttcaaa aaacctgaca aatattggtc
3661 aggaactgaa tatgaagcat gcacatatcc accacaacag tggttttgta aaggaatacc
3721 aatatacgat gcaggaaata atccaatcaa aacaaccaca caagtgtcgt ttagaattga
3781 aataacactt gaagggcgga aacgacgttc agcatacttt gctccaacat acggacctac
3841 atcaggtgat cagttatact atcaacataa ttcaaaagga atcttccaac ctgcatgtat
3901 cagatatcga acaggaggaa gaagacgagc atggcagaac atgaatacac cacaagcatt
3961 tggcagtagc actgaaaaca aaaataacat agacagatat ccaagacaag actgctacca
4021 atggaaatat gatgctacta acgtaggaga aatacagtat aatcagcacc atagacctgt
4081 aggcattgga gatgacacat cagcaaatca tccaacaaga acagtaaaaa atattgaaaa
4141 aatccgtgta acgtggtctc gtgatacaga ttctacagaa atacacatgg atgatgaaga
4201 agaacaatca caaccaaaac ctgaaccgcg taaacgttca catgatatca tgaaactaat
4261 gcatcttaaa taactgtgtc ttactccaca accacaatcg attgtaaaaa aaaatcaata
4321 aaccgtctaa tgcgagcatt aaaaccgcac tctggcctgc attattgcga catggcgggt
4381 accgcacgtg gctgcctaca gcttcgtaca tgacatgcag gcagccacgt ac
//
