LOCUS NC_076432 2222 bp DNA circular VRL 06-MAY-2023
DEFINITION Chicken genomovirus mg4_1165, complete genome.
ACCESSION NC_076432
VERSION NC_076432.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken genomovirus mg4_1165
ORGANISM Chicken genomovirus mg4_1165
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus;
Gemykrogvirus galga5.
REFERENCE 1 (bases 1 to 2222)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2222)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2222)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MN379604.
##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2222
/organism="Chicken genomovirus mg4_1165"
/mol_type="genomic DNA"
/isolate="mg4_1165"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720941"
/country="USA"
/collection_date="2017"
gene 138..1076
/locus_tag="QKO05_gp1"
/db_xref="GeneID:80536559"
CDS 138..1076
/locus_tag="QKO05_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010798384.1"
/db_xref="GeneID:80536559"
/translation="MAYARRRRVRRKRAIGRRKRVGSRRVGQNRRRKYGGRRRPMSVR
RVRAIATKPNHNLLLTRTSADMSSGDNAQVPIMSGQTYFLANMTYLEPNLGNQTVNTI
DNDMRRKDQSIFFRGWRDRLQIQVSQPVTWRRIVFWSHARIQLALPHRIPDPLHGGDL
FYYARNGARWDPAVTHSILAQELWQGTEDYDFVEHTRPVTPLNPSNLSVVSDRKVAIN
PQVNVDPSLGASGNIRSFKRWYPVNRQITYDQRERGNEIVKSVIDDNGYSVRSPNSPG
NLYCMDIFDTGQYLPEESQTQIGRLMQESNVYWRER"
gene complement(1073..2208)
/locus_tag="QKO05_gp2"
/db_xref="GeneID:80536558"
CDS complement(join(1073..1405,1516..2208))
/locus_tag="QKO05_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010798385.1"
/db_xref="GeneID:80536558"
/translation="MPSSFVCQAKQILLTYSQTNHAFDEELRQRANAHYDFVTQALRP
PVLYRLARERHNDGGLHFHCFIAWDAACPIRSQSRLDYNGSHPNIKPIRGNPKRAWEY
TGKDGDIVFQHGELDDDLNDNRSTNDSVWSAAVRAETKDKFFEIVRECAPRYYVLYSA
QLEYYAAKNYTDPKEDYTGPAFTDLSRDRFEQWRLQAGIGAGPTGRPKSLIIWGESRT
GKTIWARSLGMLRSSLIPILGRHSYFQGHFNLDEYDDDCEYAIFDDIAGNFKYFPNYK
GWLGCQKTITVTDKYKPKRKINWGRPCILLCNDDPGSDPCVDYNWLEANCFIVNVPEY
DPIASVP"
misc_feature complement(1879..2196)
/locus_tag="QKO05_gp2"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(1540..1839)
/locus_tag="QKO05_gp2"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
ORIGIN
1 taacattggc caacaaatct ctttttcttt cccccccttc ggtcctatat atagtcgaac
61 ccccgccccc cttcgcttgc aatttctttc ttccgtcaaa aaaattgttc gacgtcagct
121 agatctcgtc gtacgccatg gcgtacgcgc gtcgtcgcag ggttcgccgg aagcgtgcta
181 ttggccgccg taagcgagtt gggtcgcgtc gagtcggcca gaacaggcgt cggaagtatg
241 gtggtcgtcg gcgaccaatg agtgttcgtc gtgttcgcgc tatcgccact aagccgaacc
301 ataatctgct gctgacgcgt acgtcggctg acatgtccag cggcgataac gcccaagtgc
361 cgattatgag tggccagacc tacttccttg ccaacatgac gtacttggag cccaatttgg
421 gcaaccagac cgtcaatacg attgacaatg atatgcggcg caaggatcag tcaatttttt
481 ttcgcggatg gcgtgatcgg ctacagatcc aagtaagcca gcctgttacg tggcgtcgca
541 tcgtgttctg gtcccatgcc cgtattcagc ttgccctacc ccaccgtatc ccggacccgc
601 ttcatggtgg cgacttattt tattacgctc gaaatggcgc tcgctgggat cccgcggtga
661 ctcattctat ccttgcccag gaattgtggc aaggcaccga ggattacgac ttcgtggaac
721 atactcgtcc cgttacgcca cttaacccga gcaatttatc cgtcgtttcc gatcgcaaag
781 tcgcaattaa tccccaggtt aatgtcgacc cgtcccttgg cgcttcgggt aatatccggt
841 cttttaagcg gtggtacccg gttaatcgcc aaattaccta cgatcaacgt gagcggggta
901 atgagatcgt gaaaagtgtc attgatgaca atggttacag tgtgcggagc cctaactctc
961 ccggcaacct ctactgcatg gatatattcg atacgggtca atatctaccg gaagagagtc
1021 agacacagat agggaggttg atgcaggaat cgaatgtata ttggcgggaa cgttagggaa
1081 cactagctat aggatcgtac tccggtacgt ttacaataaa acaatttgcc tccaaccaat
1141 tataatccac gcacgggtcg cttccagggt catcgttgca gagcaagata cacggtcggc
1201 cccagttgat tttccgtttg ggcttgtact tgtccgtaac cgtaattgtt ttttggcaac
1261 ctagccaacc cttgtagttc gggaaatatt taaagttccc ggcgatgtcg tcgaatatgg
1321 cgtattcgca atcgtcatcg tattcgtcta ggttgaaatg accctggaaa taggagtgtc
1381 tgcctagtat cggtattaga gaggactgga agaggccgaa ggccggaagg ggaggggccc
1441 ccccggaggg gggggaggtg ccccgctgga aggacgagaa tatttgggga gggagcgctg
1501 cgaccgaccg cagacccgta acatacctag cgagcgggcc cagattgtct ttccagttcg
1561 agattctccc cagatgatga gcgacttagg tctcccggtc ggaccagctc cgatgccggc
1621 ctgaagtcgc cactgttcaa atcggtctcg actaaggtct gtaaaggctg gccccgtgta
1681 gtcctcctta gggtcggtat agttctttgc ggcgtagtac tcgagttgcg ccgaatatag
1741 aacataatac ctcggagcgc attctcggac aatctcaaaa aatttatctt tagtctcagc
1801 ccgtacagcc gctgaccaga ctgagtcgtt agtcgaacga ttgtcgttaa ggtcgtcatc
1861 aagttctccg tgctggaaca cgatgtcacc gtcctttccg gtatattccc aagccctctt
1921 tgggttgcct cgaatcggtt tgatattcgg gtgagatccg ttatagtcga gtcgagattg
1981 agaccggata gggcaagctg cgtcccaagc gatgaagcaa tggaaatgca gtcctccatc
2041 attatgacgt tctcgcgcaa gtcggtagag cactggaggt cgaagagcct gagtaacaaa
2101 atcataatga gcgttcgctc gttggcgaag ttcctcgtcg aaggcatggt tcgtttggga
2161 gtaggtgaga agtatttgct tagcttggca aacgaaagag ctaggcatga tttgttggct
2221 ta
//
