LOCUS NC_076433 2216 bp DNA circular VRL 06-MAY-2023
DEFINITION Chicken genomovirus mg4_1173, complete genome.
ACCESSION NC_076433
VERSION NC_076433.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken genomovirus mg4_1173
ORGANISM Chicken genomovirus mg4_1173
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus;
Gemykrogvirus galga3.
REFERENCE 1 (bases 1 to 2216)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2216)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2216)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MN379605.
##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2216
/organism="Chicken genomovirus mg4_1173"
/mol_type="genomic DNA"
/isolate="mg4_1173"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720942"
/country="USA"
/collection_date="2017"
gene 113..1048
/locus_tag="QKO06_gp1"
/db_xref="GeneID:80536562"
CDS 113..1048
/locus_tag="QKO06_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010798386.1"
/db_xref="GeneID:80536562"
/translation="MAYSRFRPNRRFRNSRRAGGRRFANRRRRYSGYRRSFRRGRRYG
GRTRGSGMRASRVRRVAARKKSDHAVGSFQETVPVVSNSVLTGPGHVYVLYCPTWMPR
QLAPKDIPRRDHLREQSNIFYRGVKESVYLSASENCFWRRVVFRSRDQIDNAAPLYGS
HPVTGNPFRIRNMQTFDPSVGGEDEQIGENLWAGMPGVDYTEDTRWKAPLDRDNLTIF
YDKTVTVNPNRDFAAEETYGKNIMRKMWHPVNRSLEYGDKETGGDVNPSPWLSDKPGQ
GNVYILDIFSTGRTAETDISFGTWNVNSTIYWHED"
gene complement(1045..2188)
/locus_tag="QKO06_gp2"
/db_xref="GeneID:80536561"
CDS complement(join(1045..1396,1503..2188))
/locus_tag="QKO06_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010798387.1"
/db_xref="GeneID:80536561"
/translation="MPLNINAKTIFLTYSQVNDDVGRDAFLSRASAHHEFLANTLRAP
LCYRLGRESHQDGGCHFHVYVAFDSPVRIQSQSRLDFGGHHPNIQSVRTGHKRVWDYA
GKADDIIAEFGEPPAVPQSAGAKEHDIWAAAVSAETEAEFYQTLRDGAPKYFVTYHRA
IEYYAQKYYARAPEPYVSPAFVDLSGRRLESWRHQATIGLNGSGHRRRSLILWGPTRT
GKTVWARSLGDNVTTNHLLGKHAYFHSYFNINDFDADADYAVFDDIAGGFQYFPNYKG
WLGAQKTFTVTDKYRPKKRIDWGKPCIMLMNDDPMFDSHVDHDWLRGNCDIIFVPTDD
PLVHVPSEHEA"
misc_feature complement(1847..2176)
/locus_tag="QKO06_gp2"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(1520..1819)
/locus_tag="QKO06_gp2"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
ORIGIN
1 taagattcta gcaactgctc tgactgactg actgatttca gaggtataaa tagggcggca
61 cccgccccgc caagtcgaca tcggtagcaa tgccaagtcg acttcgagag caatggcgta
121 ctcaaggttt cgaccaaacc gtcgttttcg caatagtcgc cgtgccggtg gtaggcggtt
181 cgccaatcgg cgccgtcgtt acagtggata tcgccgttcg ttccgaagag gtcgtcgtta
241 cggtggtagg acgcgtggca gtgggatgcg agcctcgcgt gtccgtcggg tcgctgcgcg
301 aaaaaagagt gatcacgcgg tagggtcgtt tcaagagacg gtcccggtcg tgtcgaactc
361 cgttcttact ggccccgggc atgtttacgt gttgtattgc cccacatgga tgccacgtca
421 gctagccccc aaggatattc cgcgccgaga ccacttgagg gaacagtcca atatttttta
481 ccgtggcgtc aaggagtccg tctatttgtc cgcgtccgag aattgttttt ggcgtcgtgt
541 cgtgttccgg agtcgagacc agatcgataa cgctgcgccc ctgtatggat cccaccctgt
601 gacgggtaac ccgttccgta ttcggaatat gcagaccttc gacccgtctg ttggtggaga
661 agatgagcaa attggcgaga atttgtgggc cggtatgcct ggcgtggatt acacagagga
721 tacgaggtgg aaggctccgc tagaccggga taatttaacg atattctacg ataagaccgt
781 gaccgtgaat cctaatcgcg atttcgcagc cgaggagacc tacggcaaga atataatgcg
841 gaagatgtgg catccagtga ataggtcgct ggagtatggt gataaggaga ccggtggtga
901 tgtgaacccg tctccgtggt tgtcggataa acccgggcaa gggaatgtct atatccttga
961 catattctct acgggacgta cggctgaaac ggatattagt ttcggcacat ggaatgtaaa
1021 tagcacaatt tattggcacg aagattaggc ttcgtgttcg ctaggtacat gaactaaagg
1081 atcgtcggtt ggaacaaaaa taatgtcgca attcccccgt agccaatcgt gatcgacgtg
1141 agaatcgaac atgggatcgt cgttcatcaa catgatgcac ggtttccccc agtcgatacg
1201 tttcttgggt cgatacttgt cggttacggt gaatgttttt tgtgcaccaa gccatccctt
1261 gtaattaggg aagtactgaa atcctccagc gatgtcatcg aacacggcat aatcggcgtc
1321 ggcgtcgaag tcgttgatgt tgaaatacga gtgaaaatat gcatgtttac ctaataaatg
1381 attagtggtc acgttactcc cagacgaggt aagaataatg caatgccagg gggccccgcg
1441 acagcgggga agcgcattgc gcgtaaaggc ggagccggag gcgaccagca attcgctatg
1501 actcaccgag agatctagcc caaactgttt tgccggttct tgtcggaccc cacagaatca
1561 ggcttcgtct tcggtgtcct gatccgttga gtccgatagt cgcctgatgt cgccacgatt
1621 caaggcggcg tccgctaaga tcgacaaagg ctggcgagac gtatggttcg ggggctcgag
1681 cgtagtattt ctgggcgtag tactcgatag ctcggtgata tgtgacaaaa tattttggag
1741 cgccgtctcg cagtgtctga taaaattcag cttctgtctc cgcagataca gctgccgccc
1801 atatatcgtg ctctttagca ccagccgact gtggaacagc aggaggttcc ccaaactcgg
1861 caataatgtc gtcggccttt ccggcataat cccaaacccg tttatgtcct gttcgtaccg
1921 actggatatt cgggtgatgt cctccaaagt cgagtcgaga ttgagattgt attcgcacag
1981 gagagtcgaa agcgacgtaa acgtggaaat gacatccacc atcttggtgt gactcgcgtc
2041 cgagtcggta gcatagtgga gctcgaagag tattagcaag gaactcatga tgagcactcg
2101 cacgtgaaag aaaggcatct cgtccgacat cgtcgttgac ttgtgaatat gtaaggaaga
2161 tagttttcgc gttgatgttc aggggcatga caaagcaaag tcaagaagca gttgcc
//
