LOCUS NC_076434 2173 bp DNA circular VRL 06-MAY-2023
DEFINITION Chicken genomovirus mg4_1218, complete genome.
ACCESSION NC_076434
VERSION NC_076434.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken genomovirus mg4_1218
ORGANISM Chicken genomovirus mg4_1218
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus;
Gemykibivirus galga3.
REFERENCE 1 (bases 1 to 2173)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2173)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2173)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MN379608.
##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2173
/organism="Chicken genomovirus mg4_1218"
/mol_type="genomic DNA"
/isolate="mg4_1218"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720945"
/country="USA"
/collection_date="2017"
gene 129..1025
/locus_tag="QKO07_gp1"
/db_xref="GeneID:80536565"
CDS 129..1025
/locus_tag="QKO07_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010798388.1"
/db_xref="GeneID:80536565"
/translation="MAWTRRSGRFGRRRGFRRRYRPRRRFRGRRNYRSRRPRMTTRRV
RNIAARKCRDNMRTGSLNGDGSFNAYGGLNMAGENLYGVLFSPTARIPAQTLAPNPAM
RVKSRCFVRGFSERINFRTDSGETWRWRRIVFSTPNLGQNLSQDFLSNYYDSVNGQIR
SLINVRSGNFASDLARIYSFIFEGTRNADWANPLTAKVDRTKVRIWADQIFTIQSNND
RGTDKNFKFWYPINKTIHYDEGELGADSKFVSKWSDSRMAPGRVGDIFIFDILSSNEN
TTGDTAIFSPHCTYYWHEGSAA"
gene complement(1022..2155)
/locus_tag="QKO07_gp2"
/db_xref="GeneID:80536564"
CDS complement(join(1022..1392,1564..2155))
/locus_tag="QKO07_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010798389.1"
/db_xref="GeneID:80536564"
/translation="MPAYEIRNAQYALLTYPQCGDLDPFRIVDAAASVGAECIVAREL
HADGGNHLHAFIDFGRRYTTRRADVFDVDGRHPNIQSRLRDPVAGYDYVIKDGDVVAG
GAERPEAKQNAVDKRQDNWHAICNATSRDEFFELVREHFPERLVTGWNNILAYANHHF
PLVPEPSQPVSGFDFDTSRYPELDRWAQCIIDWDASLGRGKSLVLYGDTLTGKTQWAR
SLGPHCYHNGQFNPQIHSGHARYAIFDDLKGGFKCWPSFKQWLGQQREFTITGKYLPL
TTITWGKPCIYISNTDPRMEVENSQDLDWLEGNCVFVHIEAPLF"
misc_feature complement(1847..2146)
/locus_tag="QKO07_gp2"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(join(1337..1392,1564..1795))
/locus_tag="QKO07_gp2"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
ORIGIN
1 taatattacc ccatctgttc agctgtaggt gaacactcgt ggactatata taggcagcga
61 cccccgcgga gaaactcaat tttctgagtc attttctcca cccaccctta tgcaagaatc
121 gtacgattat ggcatggaca cgtcgcagtg gccggtttgg tcggaggcgg ggtttccgcc
181 ggaggtatcg accccgccgt cgatttcgcg gtcggcgaaa ttatcgaagc cgtcgtcctc
241 ggatgacaac tcggcgcgtt cgcaacatag cggcaaggaa gtgtcgcgac aacatgagaa
301 cggggagcct caacggagac gggagcttca acgcatacgg gggtcttaac atggcgggcg
361 aaaatcttta cggcgttctt ttcagtccta cggcacgcat acccgctcag acccttgcac
421 cgaatcccgc tatgcgggta aaaagtcggt gtttcgttcg cgggtttagc gagcgaatta
481 atttccgcac agactcggga gagacttggc ggtggagacg aattgttttc agcactccca
541 atttgggtca aaacctgtca caagactttt tgtcgaatta ttatgacagc gttaatggtc
601 agattcgcag cctgatcaat gtccgaagcg ggaactttgc ttccgatttg gcaaggatct
661 actccttcat tttcgaaggt acacgcaatg cggattgggc caaccccctc actgcgaagg
721 tcgatcgcac aaaagtgcgc atctgggcgg atcagatttt tacgattcag tccaacaatg
781 atcgcggtac ggataagaac tttaagttct ggtatccgat caataagacc attcactacg
841 acgaaggaga attgggagcg gactcgaagt ttgtgagcaa gtggtccgat agccgtatgg
901 cacctggcag ggtcggagat attttcatct tcgatattct cagttccaac gagaatacca
961 ctggggatac tgcaattttc agcccgcatt gtacatatta ttggcatgaa ggctctgctg
1021 cctaaaacag tggagcttct atatgaacaa agacacaatt tccctccaac caatcaagat
1081 cctgcgaatt ctccacttcc atgcggggat cagtgtttga aatgtagata catggtttcc
1141 cccaagtgat cgtagtaagc ggaaggtatt ttccagttat agtgaactcc ctctgctggc
1201 ccaaccactg tttaaaggaa ggccagcact tgaaaccacc tttgagatcg tcgaatattg
1261 cataccgggc atgcccagaa tgaatctgtg gattgaactg cccattgtgg taacaatgtg
1321 ggcctaggga cctggcccac tgggtcttgc ccgtcaacgt atctccgtat aacaccagcg
1381 atttgcctct tcctaaaagg gttagcattt cttggcacca gatagttctc tttctgatta
1441 gccgccggca ggcgagcccc gaagagcagg gcgatgctga ccgccaggga aacggcccgc
1501 agggccgtcg ctcgcagctc ctcgtagggt gcgatacaac gctacgcacc cgaggggact
1561 taccgagaga agcatcccag tcaattatgc actgagccca tcgatcgagc tcaggatatc
1621 gcgaagtgtc gaagtcgaat ccgctaaccg gttgagatgg ctctgggacc agtggaaaat
1681 ggtgatttgc gtaggcaaga atgttgttcc agcctgtgac cagtcgttcg gggaaatgct
1741 ctcgaacaag ttcgaaaaat tcatcccgag aagttgcatt gcagatagca tgccaattgt
1801 cttgtctttt gtcaactgca ttctgctttg cctcaggtct ttctgctcca ccagcaacca
1861 cgtcgccatc cttgatgaca tagtcgtatc cagccaccgg atctcgtaag cgagactgga
1921 tgttagggtg tcgaccatcg acatcaaata catctgcgcg tcgggttgta tatcgtcttc
1981 caaagtcgat aaaagcatgg agatggtttc cgccgtcagc atgtagttcc cttgcgacaa
2041 tgcactctgc gccaaccgag gcagcagcgt cgacaatcct gaaagggtca aggtccccac
2101 attgggggta ggtgaggagc gcgtattggg cattgcggat ttcgtaagca ggcataattg
2161 aacagatggg att
//
