LOCUS NC_076436 2189 bp DNA circular VRL 06-MAY-2023
DEFINITION Chicken genomovirus mg7_73, complete genome.
ACCESSION NC_076436
VERSION NC_076436.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken genomovirus mg7_73
ORGANISM Chicken genomovirus mg7_73
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus;
Gemykibivirus galga1.
REFERENCE 1 (bases 1 to 2189)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2189)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2189)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MN379612.
##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2189
/organism="Chicken genomovirus mg7_73"
/mol_type="genomic DNA"
/isolate="mg7_73"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720949"
/country="USA"
/collection_date="2017"
gene 117..1052
/locus_tag="QKO09_gp1"
/db_xref="GeneID:80536571"
CDS 117..1052
/locus_tag="QKO09_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010798392.1"
/db_xref="GeneID:80536571"
/translation="MAYRFGRFGRRNFRRFRRRTNYRRTRRAPYRRRYTRMRRMTRRR
PTVRRVRDLAARKCEDNLIATPIDNTGAAQTPGSTNMTAANQYMYIFSPTARTAGFVT
DAGDRVLTASSSERRKTKCFVRGYKETMEMQTTDASVWVWRRIVFSTIGLAEQFSPEL
LYFRDDTRGYARTTFDLNSGTVEADQYQGMVYGRLFDGLEGVDWSSPFTAKTNPQEVR
VYSDRTVTLQSPNSDRGTYRNYKNWYPINRSIIYNDDEAGDAAKASNTVAKGTPYGNM
GDLFVVDFFRSVGPDTAGLQIVPHGKYYWHEGQSS"
gene complement(1049..2166)
/locus_tag="QKO09_gp2"
/db_xref="GeneID:80536570"
CDS complement(join(1049..1409,1577..2166))
/locus_tag="QKO09_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010798393.1"
/db_xref="GeneID:80536570"
/translation="MSAFRFYARYALLTYAQCSTLDPFAVVEHLATMGAECIIGRETH
ADGGTHLHAFVDFGRRFHSRRASVFDVAGFHPNISITKRNPQIHYDYAIKDGEVVAGG
LERPDGNAEPAAPNKHHEICLAPTREEFFESVRSLDPRLLLTSFNSLQAYADWNYRVD
PEPYRHDPEHVFDTSRFPELQQWVEKYLGWDASVMGKGKSLMLWGKSRTGKTNYARSL
SEHAYFGGLFSLEEPLEGVKYAVFDDIAGGLKFFPQYKSWLGNQLEFYTTDKYKKKKL
VKWGKPCIWISNEYPITEGVDHDWIEENCIIVHIDSPLYS"
misc_feature complement(1846..2157)
/locus_tag="QKO09_gp2"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(join(1364..1409,1577..1836))
/locus_tag="QKO09_gp2"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
ORIGIN
1 taatgttata ggtctttcag ttgtgacagt gacacttcca cgggtataaa taggcagcag
61 cctccccact ttttgcgggg taactcagca aaatcgctct tctcaacaaa tttaccatgg
121 cttaccgttt tgggagattt ggccgacgca atttccgtcg cttccggcgg cggaccaatt
181 atcgacgcac acgtcgggcg ccttaccgtc gacgttacac tcggatgcgt cgtatgactc
241 gtcgccgacc cacagttagg cgagtacgag acttggctgc acgaaagtgc gaagacaact
301 tgattgctac gccaatcgat aataccgggg ctgctcagac ccccggttcg accaatatga
361 cagcggccaa tcagtacatg tacatttttt cgcccacggc tcgcacggcc ggcttcgtca
421 cagacgccgg ggaccgtgtc ctcaccgcct cttcttccga gcggagaaaa acaaagtgtt
481 ttgtgcgggg ctacaaagag accatggaga tgcagacgac agatgcatcc gtgtgggtct
541 ggcgtcgcat tgttttcagc actattggct tggccgaaca atttagcccg gaacttcttt
601 atttccggga tgacacacgc ggatacgctc gcaccacttt tgacttgaat agtggtactg
661 ttgaggcaga ccaataccag ggtatggtat acgggcgcct tttcgatgga ctcgagggag
721 tggactggtc cagtccattt acagcaaaaa ccaaccccca ggaggtccga gtttattccg
781 atcggaccgt caccctccag tcacccaata gcgatcgggg tacctaccgc aattacaaga
841 attggtaccc cattaatcgg agcataatat acaacgatga tgaggctggc gatgccgcca
901 aggcctcgaa tactgtcgcg aagggcacac catatggaaa tatgggagat ctttttgttg
961 ttgatttctt caggagtgtt ggccccgaca ccgcgggatt gcaaatagtt ccgcatggaa
1021 agtattattg gcatgaggga caatcgtctt aactatatag gggggaatca atatgcacga
1081 taatacaatt ctcctctatc caatcatgat ccaccccttc cgtgatagga tactcgtttg
1141 atatccaaat gcaaggcttg ccccacttta ccaacttttt ctttttgtac ttgtccgtgg
1201 tatagaattc tagctggttt cccagccaag atttgtattg tgggaagaac ttgagtcctc
1261 ccgcaatgtc gtcaaacacg gcgtacttga caccctcaag gggctcctcc agcgagaaga
1321 gtccgccaaa ataggcgtgc tcggatagag atcgggcgta gttggtcttt cctgttctgg
1381 atttgcccca cagcataagg gatttccctc ttcctaaaaa cgttagcaag atagttcgca
1441 ttcctattgg cgccgccagg cgagccccgc agccggggga cggcggcgtg cgtcagtggt
1501 agccatggag gtcccccccc ctttaggggg gggccatgag accgactgcc ccccaaggcg
1561 cagggtgcga tataacttac ccattactga tgcatcccat cccaggtatt tctcaaccca
1621 ctgctggagc tcaggaaatc ttgaagtgtc gaatacatgc tctgggtcgt gtcgatatgg
1681 ctccggatcc acgcggtagt tccagtcggc atatgcctgg agcgagttga agctggtgag
1741 tagtagtctt gggtccagac tacggacaga ttcgaaaaac tcctctcgag tcggtgccag
1801 gcagatttcg tggtgtttat tcggagcagc aggctccgca ttgccatcgg gtcgttcgag
1861 ccctccagcg acaacctcac catctttgat cgcgtaatca taatgtattt gagggttgcg
1921 cttagtaatt gagatgttag ggtggaaacc tgcaacatca aaaacagatg ctcgtcgtga
1981 gtgaaatcgt cttccgaaat ccacaaaagc gtggagatga gttccgccat cagcgtgggt
2041 ttctcttcca ataatacact ctgctcccat tgttgcaagg tgctcaacaa cagcgaatgg
2101 gtcgagagtc gagcactggg catacgtgag gagggcatat cgggcgtaga atcggaatgc
2161 tgacataatg tgacactgaa agaccgtct
//
