LOCUS NC_076437 2160 bp DNA circular VRL 06-MAY-2023
DEFINITION Chicken genomovirus mg7_78, complete genome.
ACCESSION NC_076437
VERSION NC_076437.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken genomovirus mg7_78
ORGANISM Chicken genomovirus mg7_78
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus;
Gemykrogvirus galga4.
REFERENCE 1 (bases 1 to 2160)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2160)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2160)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MN379614.
##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2160
/organism="Chicken genomovirus mg7_78"
/mol_type="genomic DNA"
/isolate="mg7_78"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720951"
/country="USA"
/collection_date="2017"
gene 100..1029
/locus_tag="QKO10_gp1"
/db_xref="GeneID:80536574"
CDS 100..1029
/locus_tag="QKO10_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010798394.1"
/db_xref="GeneID:80536574"
/translation="MAYRRFRPRPRRYRRKFSQARRSYASRRGRTGRRGGRRFRKRGT
MTSARRIRDVASTKKRDLQVGRTTAEDDLEVDNTTATLRIGHQYYIWCPSYLEQNVQS
TGAHEDRHKRNRRRIFFRGIKDNVFITATSPIMWRRVVFWMNDQFLPAQPHTIFNEVD
AQSYPVRNLSQFFPETTHSDFADYVWAGTVDRDFTEATRFHAPLDKASVKVVSDRRET
INPNFGREASANLGKIRNARMWHEINRMIAYRDHEDGQKIRTSGWAGTSPRDPGNLYI
MDMFSTAHAEVPSTPGQVVGGFRTESCLYWHES"
gene complement(1026..2138)
/locus_tag="QKO10_gp2"
/db_xref="GeneID:80536573"
CDS complement(join(1026..1343,1443..2138))
/locus_tag="QKO10_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010798395.1"
/db_xref="GeneID:80536573"
/translation="MSRARFEKNAKAFLLTYSKLDENAQSAFFSRASAHYGFIVENIR
TPNCYRLGRERHQDDAVHVHCYVSFDTAVRIQSQFRFDFGGSHPNIRSVSRGHRRTYD
YAGKDGDIIAEYGEPPPPIDTSTTKDDGVWAEALRQSTKTEFLDVIRGGSPKNYILFN
KQVESFADKYFGTCEEPYRSPTFVDLSGDRLKCFTDQAALGDGIVGHRRKSLILWGPT
RTGKTVWARSLGKYSSHFYCQTYFNLKQVREDADYAVFDDLAGGFKFWPGYKSWLGAQ
KEFDITDKYQGKRHVKWGKPGICLMNSDPLFDPHVDTEWLIGNCFIVFVPENEPLVSD
VSS"
misc_feature complement(1791..2123)
/locus_tag="QKO10_gp2"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(1464..1763)
/locus_tag="QKO10_gp2"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
ORIGIN
1 taagattcta acaacagctc cctccctccc tcctctggaa aggtatttat agggggcgac
61 cccccggagt acgggtgaac aactgtccga ttttttatta tggcgtaccg gagatttagg
121 cctaggcctc ggcgataccg cagaaagttc agccaagcga ggcgcagcta tgctagtcgg
181 agggggcgca cgggaagacg gggcgggcga cgtttcagga agaggggaac catgactagc
241 gcacggagga tacgagatgt ggcgtctacc aagaaacgtg acctgcaagt tggtcggacg
301 accgcggaag atgacttgga agtggataat actacagcca ctttacgaat tgggcatcaa
361 tattacattt ggtgtccttc ttatctcgag cagaacgttc agtcgacagg agcgcatgaa
421 gatcggcata agcgaaatcg gcgtcgcatt ttcttccgtg gtatcaagga caatgtcttt
481 attaccgcca ctagtccgat aatgtggagg agagtggtat tctggatgaa cgaccagttt
541 cttcccgccc aacctcacac catttttaat gaggtcgatg ctcaatcgta ccctgtccgg
601 aacttgagcc aatttttccc cgaaactacg cattcggatt ttgccgatta tgtgtgggct
661 ggaacagtcg atcgggattt tacggaggct acgaggttcc atgccccact tgacaaggcg
721 tcggttaaag ttgtctcgga tagacgggaa acgattaacc cgaattttgg tcgtgaagct
781 tcggcaaatc ttgggaagat aaggaatgcg cggatgtggc atgaaattaa ccgtatgatt
841 gcataccggg atcatgaaga tgggcagaaa attcggacat ctggttgggc cggtacctca
901 cctagggacc cgggcaattt gtatattatg gatatgtttt ctacggcgca tgcggaagtt
961 ccctcaacgc ctggtcaagt tgttggagga ttcaggacag agtcatgttt gtattggcac
1021 gagagctagc tagatacatc tgaaacaaga ggttcatttt cgggcacaaa aacaatgaaa
1081 caattcccga ttagccactc ggtatccacg tgaggatcga acagtgggtc cgagttcatt
1141 aggcagatac caggtttgcc ccactttacg tggcgtttcc cctggtactt gtcggtaata
1201 tcgaattctt tttgtgctcc caaccaactt ttgtatcctg gccaaaactt aaatccgcct
1261 gccagatcgt cgaataccgc gtagtcagca tcctcgcgta cctgctttag gttaaaatac
1321 gtctggcagt agaagtgact agactttaat gttagcccca cgccggtatg aacccgtcag
1381 ccaggggccc cgcgacagcg gggaagcgct gacacctagg ccgaaggccg ctcatagaat
1441 acgtactttc ctaaagaccg tgcccaaaca gttttacccg tccttgtcgg accccacaat
1501 attagtgatt ttcgtctgtg tccgacgatt ccgtctccga gagcggcctg atcggtgaag
1561 catttaaggc ggtctccgct aagatcgaca aaggttggcg atctgtatgg ttcctcgcat
1621 gttccaaagt atttgtccgc gaaggattcg acctgcttat taaagaggat gtaattcttc
1681 ggagaaccgc ctctgatgac gtcaagaaac tcagttttag tcgattggcg tagtgcctcc
1741 gcccaaactc cgtcgtcttt agtcgtgcta gtgtcaatag gtggcggagg ttccccatat
1801 tcggcgatga tgtcaccatc ctttccggcg tagtcgtaag tccgcctgtg acctcgtgaa
1861 accgatcgga tgtttggatg agatcctcca aaatcgaatc gaaattgaga ttggatgcgg
1921 acagcagtgt cgaaagagac gtagcaatgt acgtgcactg catcatcttg gtgtcgctct
1981 cggccaagtc ggtaacagtt tggagttcga atattttcaa caataaagcc ataatgagcg
2041 ctcgctcgtg aaaaaaaggc tgattgggca ttttcgtcga gtttggagta cgtgaggagg
2101 aaggctttgg cgtttttttc gaatcgagca cgtgacatga ggagggaaag ctgttgtgtt
//
