LOCUS NC_076438 2183 bp DNA circular VRL 06-MAY-2023
DEFINITION Chicken genomovirus mg8_401, complete genome.
ACCESSION NC_076438
VERSION NC_076438.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken genomovirus mg8_401
ORGANISM Chicken genomovirus mg8_401
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus;
Gemykibivirus galga2.
REFERENCE 1 (bases 1 to 2183)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2183)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2183)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MN379615.
##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2183
/organism="Chicken genomovirus mg8_401"
/mol_type="genomic DNA"
/isolate="mg8_401"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720952"
/country="USA"
/collection_date="2017"
gene 123..1055
/locus_tag="QKO11_gp1"
/db_xref="GeneID:80536577"
CDS 123..1055
/locus_tag="QKO11_gp1"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010798396.1"
/db_xref="GeneID:80536577"
/translation="MAFRPRFRRRTFRRRTNRARPRRTFRRSYYRGRRTRRPNTTKRI
RNIAARKCKDKMLGLPYTLDDPPAPANPGEATTLTGNSTWGIIWNASGRSIGRLNPTG
QALFPLEADRGKSRVYFRGVAEKMSMETNSNAAWIHRRTVFLDGGETIRTHMPPDTAS
TLTGSLGYVRPLYTVLNTAAASEPGATAWHEISDQIYDGQHNVDWSNLITARMDSQKV
KVLYDKTRRISSGNDRGTWKINKYWHPVNRTIIYDDDQDGNEINTAPWSSGSRQSAGD
VIVMDIFSCADGEEADEIRVGVESTVYWHEGSGY"
gene complement(1052..2155)
/locus_tag="QKO11_gp2"
/db_xref="GeneID:80536576"
CDS complement(join(1052..1412,1569..2155))
/locus_tag="QKO11_gp2"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010798397.1"
/db_xref="GeneID:80536576"
/translation="MAFVTNARYVLLTYSQSEGLDPFSIVEHLSGMGAECIIARESHS
DGGTHLHAFVDFGRKFRTRRHDVYDVDGFHPNISPSLGNPARGYDYAIKDGDVVAGGL
ERPGEVDRSEKRDYYAEICMAPTREEFWRLARELAPRLLLANFNSLAAYADWNYRVDP
EPYRPNPEHVFNTSGYGELDEWAGKFTDWDASVSGIGKSLVIYGPTRTGKTMWSRSLG
DHAYFGGLFSLDEDISSAKYAVFDDVAGGLSFFPQYKSWLGSQLEFYTTDKYRKKQLV
KWGRCCIWLANEDPRMDPKADVDWLEGNCTFVHVSTPLF"
misc_feature complement(1853..2149)
/locus_tag="QKO11_gp2"
/note="Geminivirus Rep catalytic domain; Region:
Gemini_AL1; pfam00799"
/db_xref="CDD:366313"
misc_feature complement(join(1361..1412,1569..1828))
/locus_tag="QKO11_gp2"
/note="Geminivirus rep protein central domain; Region:
Gemini_AL1_M; pfam08283"
/db_xref="CDD:285483"
ORIGIN
1 taatgttata ctcccagcag agaacacagg gcacactgcc cattatataa agaagcgacc
61 ccgcacaatc agtaagtggg tcctcaacaa ttttgaaatg acgccatatt caacaaatca
121 aaatggcttt ccgaccccgc ttccgcaggc gtacgtttcg acggaggacc aatcgtgcga
181 ggccacgtcg caccttccgt cgttcctact atcggggtcg ccggacacga cgtcccaaca
241 caaccaagag gatccgcaat attgctgcac ggaagtgcaa ggacaaaatg ctcggcttgc
301 cgtacaccct cgacgatcca ccggcccccg caaatcccgg ggaagcgaca accttaacag
361 ggaattcaac atggggtatc atctggaacg ccagcgggcg ttctattggc cggctgaatc
421 cgaccggaca ggctctcttt cccctcgaag ccgatcgagg gaagagtcga gtctacttca
481 ggggagtggc ggagaaaatg tctatggaga caaactccaa tgctgcgtgg atccaccgga
541 ggaccgtatt tttggatggg ggggaaacta tccggaccca catgccaccc gacactgcct
601 cgaccctcac gggatccctc ggctatgtca ggccgttgta cacagtactc aacacggctg
661 ctgcctcgga gccaggtgct accgcttggc acgaaatcag cgaccaaatc tacgacgggc
721 aacacaatgt agattggagc aacctcatca ctgcccggat ggacagtcag aaggtcaaag
781 tcctatacga caagaccagg agaatttctt cgggcaacga ccggggtaca tggaagatca
841 acaagtactg gcacccggtc aatcggacga tcatttatga tgacgaccag gatggaaatg
901 aaattaacac cgcaccatgg agttcgggat cacgtcagag cgcaggcgat gtcattgtca
961 tggatatatt cagctgcgcc gacggcgaag aagcggatga gatacgagtt ggagtggagt
1021 caaccgtata ttggcatgaa ggaagtggat actagaaaag aggggtagat acatgaacaa
1081 aagtgcaatt tccctccaac caatccacgt cagccttggg atccatacgt gggtcctcat
1141 tagccaacca aatgcaacaa cgaccccact ttaccaattg cttctttcgg tacttgtctg
1201 tcgtgtaaaa ttccaattgg ctgcctagcc aagacttgta ttgtggaaaa aaagatagtc
1261 cacctgccac gtcatcaaag actgcatact tcgcggaaga tatgtcctcg tccaatgaga
1321 agaggccgcc aaaataggca tgatctccta gtgatcgaga ccacatggtc ttgccggttc
1381 gcgtaggtcc gtaaatgacc agcgattttc ctctacctaa ataaatgtga gtcatgattc
1441 cttatggcgt cgcagacgag ccccggagtg gaggcgcagc gacgtgcgtc agtggtagtc
1501 atggaggttg ccccccgtag gggggcctat gaaaccgacc gctgccggca cacagggtgc
1561 gatataacat accacttaca cttgcatccc agtcagtgaa tttgccagcc cattcatcga
1621 gttcaccata tccactagtg ttgaatacgt gctctgggtt aggtcgatat ggctctggat
1681 ccactcggta gttccaatcg gcataagcgg ccaagctgtt gaagttggcg agcagtagtc
1741 gtggagccaa ctcacgagca aggcgccaaa actcctctct agtcggtgcc atgcagattt
1801 cagcgtagta atcgcgcttt tcagagcgat ccacttcgcc gggtcgttcg agtcctcctg
1861 cgacaacgtc accatctttg atcgcgtaat cataaccgcg tgcagggttc ccgagagaag
1921 gcgagatgtt agggtggaag ccgtcaacat catacacgtc atgtcgtctt gttctgaact
1981 ttcttccgaa atcgacaaaa gcgtgcaaat gagttccgcc atcagagtgg gactctcgtg
2041 caatgatgca ttctgcaccc attcctgaca ggtgctcaac aattgagaac gggtcgagac
2101 cctccgattg cgaataggtg aggaggacat agcgtgcgtt ggtgacaaat gccattttcc
2161 gagtgtgtcc tgctgggaga att
//
