LOCUS NC_076439 2534 bp DNA circular VRL 06-MAY-2023
DEFINITION Chicken smacovirus mg4_881, complete genome.
ACCESSION NC_076439
VERSION NC_076439.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken smacovirus mg4_881
ORGANISM Chicken smacovirus mg4_881
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus;
Porprismacovirus chicas2.
REFERENCE 1 (bases 1 to 2534)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2534)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2534)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MN379619.
##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2534
/organism="Chicken smacovirus mg4_881"
/mol_type="genomic DNA"
/isolate="mg4_881"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720958"
/country="USA"
/collection_date="2017"
gene 1..810
/locus_tag="QKO12_gp1"
/db_xref="GeneID:80536580"
CDS 1..810
/locus_tag="QKO12_gp1"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010798398.1"
/db_xref="GeneID:80536580"
/translation="MVTNYMITMPRNENMNALKLLRYINTHDVKKWVIGAEIGKSGYQ
HWQCRVAVSDDHFYEFEEVFDWIRQQKKKVGTGWINVNIPEAHVEECSDTWEYETKEG
RFIASWDTPEVRRLRFGKMTWTQETCVNLLRNTKDREIVVWYDPEGNHGKTWLVGHLY
ETGQAYYLPPTLTSVQSMLQTMASLAWADREKGRTPKEFVFIDIPRSWKWSKELYTAI
ESIKDGLIMDPRYSARPINIRGIKVLVMTNTRPELDKLSQDRWVWFNTPMF"
gene complement(1303..2331)
/locus_tag="QKO12_gp2"
/db_xref="GeneID:80536579"
CDS complement(1303..2331)
/locus_tag="QKO12_gp2"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010798399.1"
/db_xref="GeneID:80536579"
/translation="MVMVRISETYDLSTKVDKLGVVGIHTPTGDLIDRMYPGLVLQCR
KFRFVKCDVAMACASMLPADPLQVGVEAGTIAPQDMFNPILYKAVSNDSMNNFLRFIQ
AVDDEAGVTASFRQGSIISVNNGTFDNIDGTAQDQFKMYYALLADSDGWRKAMPQSGL
SMGGLYPLVYQVVAQFGNDTRNGSLASGGVNAPGLKNASGTPPVSGEGVAFIPDHHLR
GPSMRMPSIDTMYYNDPDSSTSLVVPNQTALVKSNTRNVPPAYVGLIVLPPAKLNQLY
YRLKVTWTIEFTDMVAMTDISKWANLTSIGTASYGSDYEVQSKAMADRTAMVDTSGAD
IEKVMESA"
ORIGIN
1 atggttacga actacatgat aaccatgcca aggaacgaga acatgaacgc cttaaaacta
61 ctgcgctaca tcaacacgca tgacgtgaag aagtgggtga taggagcaga gatcggaaaa
121 tcgggatacc agcactggca gtgcagagta gcagtgagcg acgatcattt ctacgagttc
181 gaggaggtat tcgattggat cagacagcag aaaaagaagg tcgggacagg ttggatcaac
241 gtcaacatac cagaggcaca cgtcgaggag tgctcggaca catgggaata cgagaccaag
301 gagggcaggt tcatagcatc atgggacacg cccgaggtaa ggagactgag atttggtaag
361 atgacatgga cccaggaaac gtgcgtaaac ctgcttagaa acacgaaaga tcgcgagata
421 gtagtatggt acgacccaga gggcaatcat ggcaagacgt ggctagtagg gcacctatac
481 gagacgggac aagcgtacta ccttccgcct acgctaacga gcgttcaatc aatgctacaa
541 acaatggcaa gcctcgcatg ggcagacagg gagaaaggaa gaaccccaaa ggagtttgtc
601 ttcatcgaca taccgagatc gtggaagtgg tccaaggaac tgtacaccgc gatcgagagc
661 atcaaggacg ggcttatcat ggacccgagg tactcggcga gaccaatcaa catacgtggg
721 ataaaggtac tagtcatgac caacacaagg cccgaactag acaaactatc acaggacagg
781 tgggtttggt tcaatacacc aatgttctaa caggggctcc gcccgccccc caaaggggcc
841 ccccctgaga gggtgaccga caggacaatc aggggggtag cccttatcgt aacactgacg
901 gtctaccccc ctttaggggg gtagagtgga agtagtttac cactcgatgt ggagtctagt
961 caagaaccaa tccctgactt tgatgaccaa gtccaagagc ttcacctgta caacctctcg
1021 atattcgatg atacgaagtt cagagcacca acagcactac ggtctacacc agcaacggta
1081 cgggtaggat actcaatatc agaccaggac agaccgcgat tggtcatgta gtcgtacatg
1141 tagttccagt tatcacgagc ctggagcata gtcccaatga tcggaaatcc agcgaggaaa
1201 gcctgagcac gatactcaag catagcctga cgctcaagga gttctgggga gggtttcccc
1261 tgagagccat acagagcata gagagcatcc tgaacactca tatcaagcac tctccattac
1321 cttttcgata tcagcaccag aagtatcaac catagcagtt ctatcagcca tagccttaga
1381 ctgaacttca taatcagagc cgtaagacgc agttccaata ctagtcagat tagcccactt
1441 ggaaatatca gtcatagcga ccatatcggt aaactcgatg gtccaagtca ccttaagcct
1501 atagtacagc tggttgagtt tagcaggagg aagcacgatc agaccaacat aggcaggagg
1561 cacgttacga gtattagact taacaagagc agtctgatta ggtacaacaa gagaagtgct
1621 agaatcagga tcattataat acatcgtatc gatagagggc atcctcatag agggaccacg
1681 gaggtgatga tcggggatga aagcgacacc ctcaccagat acaggagggg taccagacgc
1741 attcttgaga ccaggagcat tgacaccacc agaagcaaga gatccattac gagtatcatt
1801 accaaactgt gctacgacct gatacaccag aggatagaga ccgcccatag acagaccaga
1861 ctgaggcatc gccttacgcc atccatcaga atcagcgagc agagcataat acatcttaaa
1921 ctggtcctga gcagtaccgt caatattatc aaaggtacca ttgttgacag agatgatgga
1981 accctgacgg aacgaggcag taacaccagc ctcatcatcg acagcctgaa tgaacctgag
2041 gaaattgttc atactatcat tggagacagc cttatacagg atagggttaa acatatcctg
2101 gggagcgatc gtaccagcct cgacgccgac ctgcagaggg tcagcaggga gcatactcgc
2161 acacgccatg gcaacgtcgc acttcacgaa cctgaacttc ctacactgaa gcacaagacc
2221 aggatacatc ctatcaatga gatcgccagt aggggtatga ataccaacaa cacccagctt
2281 atcgacctta gtcgacaggt cataggtttc agaaatcctt accataacca tagtatcacc
2341 tattcttttt catcttcttt ttcacacgag tgggaacaac aggaacgaag cacatcacca
2401 acgccttctg taatacctgc gtccagaata ccttcttcca ccataccttc ttccgtatgc
2461 cataaataca cacactccat ttttcattat aacgggaata gcccgttgca caaatatgta
2521 catggaggta taaa
//
