LOCUS NC_076440 2532 bp DNA circular VRL 06-MAY-2023
DEFINITION Chicken smacovirus mg4_885, complete genome.
ACCESSION NC_076440
VERSION NC_076440.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken smacovirus mg4_885
ORGANISM Chicken smacovirus mg4_885
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus;
Porprismacovirus chicas4.
REFERENCE 1 (bases 1 to 2532)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2532)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2532)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MN379620.
##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2532
/organism="Chicken smacovirus mg4_885"
/mol_type="genomic DNA"
/isolate="mg4_885"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720959"
/country="USA"
/collection_date="2017"
gene 1..855
/locus_tag="QKO13_gp1"
/db_xref="GeneID:80536583"
CDS 1..855
/locus_tag="QKO13_gp1"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010798400.1"
/db_xref="GeneID:80536583"
/translation="MGINGRGSIKMYMLTIPRNNDGKYPIIRLMRYIHENDIKKWIIA
EEEGRYGYKHWQVRLQAREGFWEFEERTVPKLGPNWTIVEEKVKVGTGWVNRNIPEAH
VEECSEDSDYETKEGRYWASWDTPEVHRQRWGRMRWYQEAIINRLRETNDRQIVVWYD
PKGKAGKSWLIGHMYETGMAYFTEPTLNSVQAMVQDVANEAMKDRKAGYPPREFLIID
MPRTWKWSDQLYVAIEHIKDGLIKDPRYGAKPVNIRGIKVLVLTNTMPDLKKLTDDRW
VIENTPML"
gene complement(1341..2381)
/locus_tag="QKO13_gp2"
/db_xref="GeneID:80536582"
CDS complement(1341..2381)
/locus_tag="QKO13_gp2"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010798401.1"
/db_xref="GeneID:80536582"
/translation="MVMVKVSETYDLSTKVNRMGLVGIHTPKGNLISRLWPGMLLQHK
KFRFVKCDVAMACASMLPADPLQVGVEAGSIAPQDLFNPILYKAVSNQSMNQFLAWLN
VVEQADELTGAFNQNSVVDVNNPVFKDSIGGEIDQFKMYYALLSDTDGWRKAMPQAGL
TMRDLVPLVFQVVSQYGVGPVNNADDAVDNVPAPALDADSVPDGPPASTVGKVSSVLN
RTMRGPSMRMPAIDTSYFANDSGTDSVVVPGFDKNVGFSIDKVPPAYVGLIVLPPAKL
NQLYYRLKVSWTIEFTGIRSTVDYMNWGGLMSLGNDAYGTDYDVQSKSMANTLGMADT
AGADITKIMEGC"
ORIGIN
1 atgggcataa atggacgtgg tagtataaaa atgtacatgc tgacgattcc gaggaacaac
61 gacggaaaat atccgataat ccgcctgatg cggtacatcc atgagaacga catcaagaaa
121 tggatcatcg cggaggaaga gggaagatac gggtacaagc actggcaggt acgccttcaa
181 gcaagggaag gattctggga attcgaggag aggacggtac cgaagctcgg accgaactgg
241 acgatcgtgg aggagaaggt aaaggtagga acgggctggg tcaacaggaa catacccgag
301 gcacacgtgg aggaatgctc ggaagattct gactacgaga ccaaggaagg aaggtattgg
361 gcatcatggg acacgcccga agtgcacagg cagagatggg ggaggatgag atggtaccaa
421 gaagccatca taaaccgcct cagagagacg aacgacaggc agatagtggt ttggtacgac
481 ccgaagggaa aggccggcaa atcgtggctt atagggcata tgtacgagac gggaatggca
541 tacttcacag agccgacatt aaacagcgtg caagcgatgg tgcaggacgt ggcgaacgaa
601 gcaatgaagg atcgcaaggc agggtatcca ccaagggaat ttctgatcat agacatgccg
661 aggacgtgga aatggtctga ccagctgtac gtcgcgatcg aacacatcaa ggacggttta
721 atcaaggacc ctagatacgg agcgaaacca gtcaacatca gagggattaa ggtcctagta
781 ctaacgaata caatgcctga cctcaaaaaa ctaacagatg accgttgggt tatcgaaaat
841 acaccaatgc tctaaacggt gctaccgcac ggccacagct cactccgtgg ggcgctaacg
901 cgggataaaa ccaagggggt agccctttac gtaacactga ggtctacccc cctttagggg
961 ggtagagtga agtagtttac tcatcaggaa cgatggtcac atctttgact tcgattccag
1021 tctcatcgtc agcggcgtcg agacgaaacg atactctcca tttcatttgt acaacctcac
1081 aatattctca ctaacgaaat tagttagacc agcaacaccc tgataaccga tagtcatcga
1141 aggatagagg atatcggaat aggacagtcc acgattctcc atgtaatcgt ccatgtaacg
1201 agccttatcc caagcttcca tgacatcgcc aataactgga agaccgccga tgacagccct
1261 ggcataatac aagatgcgat catcaacgac agaggaaaca ggaacattcc cagggttgga
1321 atagtggaca tacctagcca tcaacaaccc tccatgatct tggtaatatc cgcaccagca
1381 gtatcagcca tgcctagagt gttcgccata gacttggact gaacatcgta atcggtaccg
1441 taggcatcgt taccgagaga catgagacca ccccagttca tgtaatcaac agtggagcga
1501 atcccagtaa actcgatagt ccaagacact ttgagacgat agtagagctg attgagtttt
1561 gcaggaggga gcacgatcag accgacgtat gcaggaggaa ccttatcaat ggagaaacca
1621 acgttcttat cgaatccagg aacaacgacg gaatcggttc cagaatcatt agcaaaatac
1681 gaagtatcga tggcgggcat cctcatagaa ggaccacgca tagtacggtt gaggacggag
1741 gaaaccttac caacagtgga tgcggggggt ccatcaggta cactatcagc atcgagggca
1801 ggagcgggaa cattatcaac agcatcatca gcattgttaa caggaccgac accgtactga
1861 ctgacgacct ggaaaacaag aggcacgaga tccctcatgg taagaccagc ctggggcatc
1921 gccttacgcc aaccatcagt atccgagagg agggcataat acatcttgaa ctgatcaatt
1981 tcgccaccga tcgaatcctt aaagacagga ttgttgacat caacgacaga attctgattg
2041 aaagcaccag taagctcatc agcctgttca acaacattga gccatgcaag gaactgattc
2101 atggactgat tcgagacagc cttatacaaa atcgggttaa agagatcctg cggagcaatg
2161 gaaccagcct caactccaac ctggagagga tcagctggca gcatggacgc acacgccata
2221 gcgacgtcac atttaacgaa tctaaacttc ttgtgctgaa gcagcatacc tggccaaagc
2281 ctagagataa gattaccctt aggagtatga attccaacga gacccatacg attgacctta
2341 gtagacaggt cataagtctc cgaaaccttt accattacca tagaaaaaac ctcttggatt
2401 cctacgaaaa gtaggcctca cgatcaccag cgcctcctgt agtaacgtcc gcgtccgtag
2461 taccttctcc ttctatagcc ataagccata tgtaatcaca cctctttttt cgttttacca
2521 agacttgctt gg
//
